Rh7AG236500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0019046
Physical Location & Seq
Forward (+)
23157576 .. 23170837
13262 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG236500.1

Sequence Viewer

Length: 576 bp
ATGGCTCTTGGGCTGGATTCTGGGCGCCATGGTGATCCGGCCATTGATGTTAGGTGGGGTCTAAGATGCAATGCAGTAGCGTCGTTCGATGGTGGTTATGGGTCGGGTCCCTCAGCACGATACGTTGGTGTCACCAAGGGTGGATTGAGTTTGGAATTCACAAGCTCAAGCAGCAGCAGCTACAACTTGGCAGCAGTCAAGCTTCCCCAAGATGGAATCGCAGACTCATACGGCATGTCATATGATTTTGTAAAGATTGTAGGTTCATGCAACGGCCTCGCTGGCCCTGCTATGAACATATCTCACAATGTGAGAATCCAAATGGGAGGTGTAGACTTTCGGGCTTTCGGGCCGGATGTCGTCTTGATGACGATGAAGAAGGGGTTCCACACTTCCACGTGCCTTTGGGGCGGTAGGCGAGCTAAATCGTATTCGAAGAAGGTGCCGAGGTTGAGACTTGAGAGTGAGCTCCTTGGACTAGCCGGCAACGAATTGGAATTGGAATGGCAAGCCCAAGATGCTGAGAGGCACTTTGACCCTCCGCAATGGCTTTTGGTCCTCCCGGAATTTGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

191

Amino Acids

20.63

Weight (kDa)

6.42

Isoelectric Point (pI)

43.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019046)

Species Orthologous Gene IDs
rosa_laevigata RLG00000003237
rosa_multiflora Rmu_sc0000841.1_g000026
rosa_roxburghii Rroxscaffold_3G00250670
rosa_samantha Rh7AG236500 Rh7BG232000 Rh7BG232100 Rh7CG252200 Rh7CG252300 Rh7DG242500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 24, 442
AccI GTMKAC 1 cut(s) 333
AciI CCGC 2 cut(s) 411, 542
AclWI GGATC 1 cut(s) 29
AcoI YGGCCR 1 cut(s) 39
AcsI RAATTY 2 cut(s) 155, 566
AcvI CACGTG 1 cut(s) 399
AcyI GRCGYC 1 cut(s) 25
AdeI CACNNNGTG 1 cut(s) 310
AfiI CCNNNNNNNGG 1 cut(s) 212
AluBI AGCT 5 cut(s) 165, 180, 202, 422, 469
AluI AGCT 5 cut(s) 165, 180, 202, 422, 469
Alw21I GWGCWC 1 cut(s) 471
Alw26I GTCTC 1 cut(s) 448
AlwI GGATC 1 cut(s) 29
AoxI GGCC 4 cut(s) 39, 274, 283, 350
ApeKI GCWGC 4 cut(s) 171, 174, 177, 191
ApoI RAATTY 2 cut(s) 155, 566
Asp700I GAANNNNTTC 1 cut(s) 383
AspLEI GCGC 1 cut(s) 27
AspS9I GGNCC 4 cut(s) 107, 284, 350, 556
AsuC2I CCSGG 1 cut(s) 563
AsuHPI GGTGA 2 cut(s) 44, 124
AsuII TTCGAA 1 cut(s) 434
AvaII GGWCC 2 cut(s) 107, 556
BaeI ACNNNNGTAYC 2 cut(s) 112, 145
BanI GGYRCC 2 cut(s) 24, 442
BanII GRGCYC 1 cut(s) 471
BbrPI CACGTG 1 cut(s) 399
Bbv12I GWGCWC 1 cut(s) 471
BbvCI CCTCAGC 1 cut(s) 112
BbvI GCAGC 4 cut(s) 183, 186, 189, 203
BccI CCATC 2 cut(s) 83, 206
BceAI ACGGC 2 cut(s) 247, 289
BcgI CGANNNNNNTGC 6 cut(s) 63, 97, 259, 293, 424, 458
BcnI CCSGG 1 cut(s) 563
BcoDI GTCTC 1 cut(s) 448
BfaI CTAG 1 cut(s) 479
BfoI RGCGCY 1 cut(s) 28
BglI GCCNNNNNGGC 2 cut(s) 282, 408
BisI GCNGC 4 cut(s) 172, 175, 178, 192
BlsI GCNGC 4 cut(s) 173, 176, 179, 193
Bme1390I CCNGG 1 cut(s) 563
Bme18I GGWCC 2 cut(s) 107, 556
BmgT120I GGNCC 4 cut(s) 107, 284, 350, 556
BmiI GGNNCC 5 cut(s) 26, 108, 109, 386, 444
BmrFI CCNGG 1 cut(s) 563
BmsI GCATC 2 cut(s) 56, 508
Bpu10I CCTNAGC 1 cut(s) 112
Bpu14I TTCGAA 1 cut(s) 434
BpuEI CTTGAG 2 cut(s) 151, 479
BpuMI CCSGG 1 cut(s) 563
BsaAI YACGTR 1 cut(s) 399
BsaHI GRCGYC 1 cut(s) 25
BsaJI CCNNGG 4 cut(s) 28, 135, 446, 472
Bsc4I CCNNNNNNNGG 1 cut(s) 212
Bse118I RCCGGY 1 cut(s) 482
Bse3DI GCAATG 2 cut(s) 76, 551
BseDI CCNNGG 4 cut(s) 28, 135, 446, 472
BseGI GGATG 1 cut(s) 361
BseLI CCNNNNNNNGG 1 cut(s) 212
BseMI GCAATG 2 cut(s) 76, 551
BseMII CTCAG 2 cut(s) 126, 513
BseXI GCAGC 4 cut(s) 183, 186, 189, 203
BshFI GGCC 4 cut(s) 41, 276, 285, 352
BshNI GGYRCC 2 cut(s) 24, 442
BsiHKAI GWGCWC 1 cut(s) 471
BsiSI CCGG 4 cut(s) 38, 353, 483, 563
BslFI GGGAC 1 cut(s) 93
BslI CCNNNNNNNGG 1 cut(s) 212
BsmAI GTCTC 1 cut(s) 448
BsmFI GGGAC 1 cut(s) 93
BsnI GGCC 4 cut(s) 41, 276, 285, 352
Bsp119I TTCGAA 1 cut(s) 434
Bsp1286I GDGCHC 1 cut(s) 471
Bsp143I GATC 1 cut(s) 34
Bsp19I CCATGG 1 cut(s) 28
BspACI CCGC 2 cut(s) 411, 542
BspANI GGCC 4 cut(s) 41, 276, 285, 352
BspCNI CTCAG 2 cut(s) 125, 514
BspLI GGNNCC 5 cut(s) 26, 108, 109, 386, 444
BspPI GGATC 1 cut(s) 29
BspT104I TTCGAA 1 cut(s) 434
BspT107I GGYRCC 2 cut(s) 24, 442
BsrDI GCAATG 2 cut(s) 76, 551
BsrFI RCCGGY 1 cut(s) 482
BssAI RCCGGY 1 cut(s) 482
BssECI CCNNGG 4 cut(s) 28, 135, 446, 472
BssMI GATC 1 cut(s) 34
BssNI GRCGYC 1 cut(s) 25
BssT1I CCWWGG 3 cut(s) 28, 135, 472
BstACI GRCGYC 1 cut(s) 25
BstBAI YACGTR 1 cut(s) 399
BstBI TTCGAA 1 cut(s) 434
BstC8I GCNNGC 4 cut(s) 283, 420, 484, 510
BstDEI CTNAG 3 cut(s) 62, 112, 522
BstDSI CCRYGG 1 cut(s) 28
BstF5I GGATG 1 cut(s) 361
BstH2I RGCGCY 1 cut(s) 28
BstHHI GCGC 1 cut(s) 27
BstKTI GATC 1 cut(s) 37
BstMAI GTCTC 1 cut(s) 448
BstMBI GATC 1 cut(s) 34
BstMWI GCNNNNNNNGC 6 cut(s) 171, 177, 282, 287, 408, 518
BstNSI RCATGY 1 cut(s) 238
BstSCI CCNGG 1 cut(s) 561
BstV1I GCAGC 4 cut(s) 183, 186, 189, 203
BsuRI GGCC 4 cut(s) 41, 276, 285, 352
BtgI CCRYGG 1 cut(s) 28
BtsCI GGATG 1 cut(s) 361
Cac8I GCNNGC 4 cut(s) 283, 420, 484, 510
CfoI GCGC 1 cut(s) 27
Cfr10I RCCGGY 1 cut(s) 482
Cfr13I GGNCC 4 cut(s) 107, 284, 350, 556
CseI GACGC 1 cut(s) 69
CviAII CATG 3 cut(s) 29, 235, 267
DdeI CTNAG 3 cut(s) 62, 112, 522
DinI GGCGCC 1 cut(s) 26
DpnI GATC 1 cut(s) 36
DpnII GATC 1 cut(s) 34
DraIII CACNNNGTG 1 cut(s) 310
EaeI YGGCCR 1 cut(s) 39
Ecl136II GAGCTC 1 cut(s) 469
Eco130I CCWWGG 3 cut(s) 28, 135, 472
Eco24I GRGCYC 1 cut(s) 471
Eco47I GGWCC 2 cut(s) 107, 556
Eco53kI GAGCTC 1 cut(s) 469
Eco72I CACGTG 1 cut(s) 399
EcoICRI GAGCTC 1 cut(s) 469
EcoO109I RGGNCCY 1 cut(s) 107
EcoRI GAATTC 1 cut(s) 155
EcoT14I CCWWGG 3 cut(s) 28, 135, 472
EcoT38I GRGCYC 1 cut(s) 471
EgeI GGCGCC 1 cut(s) 26
EheI GGCGCC 1 cut(s) 26
ErhI CCWWGG 3 cut(s) 28, 135, 472
FaeI CATG 3 cut(s) 32, 238, 270
FaiI YATR 9 cut(s) 30, 99, 229, 236, 241, 243, 268, 293, 299
FaqI GGGAC 1 cut(s) 93
FatI CATG 3 cut(s) 28, 234, 266
FauNDI CATATG 1 cut(s) 241
FblI GTMKAC 1 cut(s) 333
Fnu4HI GCNGC 4 cut(s) 172, 175, 178, 192
FokI GGATG 1 cut(s) 368
FriOI GRGCYC 1 cut(s) 471
Fsp4HI GCNGC 4 cut(s) 172, 175, 178, 192
FspBI CTAG 1 cut(s) 479
GlaI GCGC 1 cut(s) 26
GluI GCNGC 4 cut(s) 172, 175, 178, 192
HaeII RGCGCY 1 cut(s) 28
HaeIII GGCC 4 cut(s) 41, 276, 285, 352
HapII CCGG 4 cut(s) 38, 353, 483, 563
HgaI GACGC 1 cut(s) 69
HhaI GCGC 1 cut(s) 27
Hin1I GRCGYC 1 cut(s) 25
Hin1II CATG 3 cut(s) 32, 238, 270
Hin6I GCGC 1 cut(s) 25
HinP1I GCGC 1 cut(s) 25
HindIII AAGCTT 1 cut(s) 200
HinfI GANTC 4 cut(s) 17, 216, 224, 315
HpaII CCGG 4 cut(s) 38, 353, 483, 563
HphI GGTGA 2 cut(s) 44, 124
Hpy166II GTNNAC 1 cut(s) 334
Hpy188III TCNNGA 1 cut(s) 364
Hpy8I GTNNAC 1 cut(s) 334
Hpy99I CGWCG 1 cut(s) 85
HpyAV CCTTC 2 cut(s) 373, 433
HpyCH4IV ACGT 2 cut(s) 123, 398
HpyCH4V TGCA 3 cut(s) 69, 74, 270
HpyF10VI GCNNNNNNNGC 6 cut(s) 171, 177, 282, 287, 408, 518
HpyF3I CTNAG 3 cut(s) 62, 112, 522
HpySE526I ACGT 2 cut(s) 123, 398
Hsp92I GRCGYC 1 cut(s) 25
Hsp92II CATG 3 cut(s) 32, 238, 270
HspAI GCGC 1 cut(s) 25
KasI GGCGCC 1 cut(s) 24
KflI GGGWCCC 1 cut(s) 107
KroI GCCGGC 1 cut(s) 482
KroNI GCCGGC 1 cut(s) 484
Kzo9I GATC 1 cut(s) 34
LmnI GCTCC 1 cut(s) 474
LpnPI CCDG 6 cut(s) 6, 51, 267, 300, 366, 496
Lsp1109I GCAGC 4 cut(s) 183, 186, 189, 203
LweI GCATC 2 cut(s) 56, 508
MaeI CTAG 1 cut(s) 479
MaeII ACGT 2 cut(s) 123, 398
MaeIII GTNAC 1 cut(s) 130
MalI GATC 1 cut(s) 36
MboI GATC 1 cut(s) 34
MboII GAAGA 2 cut(s) 388, 448
MhlI GDGCHC 1 cut(s) 471
MluCI AATT 4 cut(s) 155, 491, 497, 566
Mly113I GGCGCC 1 cut(s) 25
MlyI GAGTC 1 cut(s) 218
MnlI CCTC 7 cut(s) 121, 287, 320, 441, 519, 549, 569
MroNI GCCGGC 1 cut(s) 482
MroXI GAANNNNTTC 1 cut(s) 383
MspI CCGG 4 cut(s) 38, 353, 483, 563
MspR9I CCNGG 1 cut(s) 563
MwoI GCNNNNNNNGC 6 cut(s) 171, 177, 282, 287, 408, 518
NaeI GCCGGC 1 cut(s) 484
NarI GGCGCC 1 cut(s) 25
NciI CCSGG 1 cut(s) 563
NcoI CCATGG 1 cut(s) 28
NdeI CATATG 1 cut(s) 241
NdeII GATC 1 cut(s) 34
NgoMIV GCCGGC 1 cut(s) 482
NlaIII CATG 3 cut(s) 32, 238, 270
NlaIV GGNNCC 5 cut(s) 26, 108, 109, 386, 444
NmeAIII GCCGAG 1 cut(s) 471
NmuCI GTSAC 1 cut(s) 130
NspI RCATGY 1 cut(s) 238
NspV TTCGAA 1 cut(s) 434
PdiI GCCGGC 1 cut(s) 484
PdmI GAANNNNTTC 1 cut(s) 383
PfeI GAWTC 3 cut(s) 17, 216, 315
PfoI TCCNGGA 1 cut(s) 561
PkrI GCNGC 4 cut(s) 173, 176, 179, 193
PleI GAGTC 1 cut(s) 218
PluTI GGCGCC 1 cut(s) 28
PmaCI CACGTG 1 cut(s) 399
PmlI CACGTG 1 cut(s) 399
PpsI GAGTC 1 cut(s) 218
Ppu21I YACGTR 1 cut(s) 399
PpuMI RGGWCCY 1 cut(s) 107
Psp124BI GAGCTC 1 cut(s) 471
Psp5II RGGWCCY 1 cut(s) 107
PspCI CACGTG 1 cut(s) 399
PspN4I GGNNCC 5 cut(s) 26, 108, 109, 386, 444
PspPI GGNCC 4 cut(s) 107, 284, 350, 556
PspPPI RGGWCCY 1 cut(s) 107
SacI GAGCTC 1 cut(s) 471
SatI GCNGC 4 cut(s) 172, 175, 178, 192
Sau3AI GATC 1 cut(s) 34
Sau96I GGNCC 4 cut(s) 107, 284, 350, 556
SchI GAGTC 1 cut(s) 218
ScrFI CCNGG 1 cut(s) 563
SduI GDGCHC 1 cut(s) 471
SfaNI GCATC 2 cut(s) 56, 508
SfiI GGCCNNNNNGGCC 1 cut(s) 282
SfoI GGCGCC 1 cut(s) 26
SfuI TTCGAA 1 cut(s) 434
SinI GGWCC 2 cut(s) 107, 556
SmlI CTYRAG 2 cut(s) 166, 458
SmoI CTYRAG 2 cut(s) 166, 458
Sse9I AATT 4 cut(s) 155, 491, 497, 566
SsiI CCGC 2 cut(s) 411, 542
SspDI GGCGCC 1 cut(s) 24
SspMI CTAG 1 cut(s) 479
SstI GAGCTC 1 cut(s) 471
StyD4I CCNGG 1 cut(s) 561
StyI CCWWGG 3 cut(s) 28, 135, 472
TaiI ACGT 2 cut(s) 126, 401
TaqI TCGA 2 cut(s) 87, 434
TasI AATT 4 cut(s) 155, 491, 497, 566
TfiI GAWTC 3 cut(s) 17, 216, 315
TseFI GTSAC 1 cut(s) 130
TseI GCWGC 4 cut(s) 171, 174, 177, 191
Tsp45I GTSAC 1 cut(s) 130
TspDTI ATGAA 3 cut(s) 255, 308, 389
VpaK11BI GGWCC 2 cut(s) 107, 556
XapI RAATTY 2 cut(s) 155, 566
XceI RCATGY 1 cut(s) 238
XmiI GTMKAC 1 cut(s) 333
XmnI GAANNNNTTC 1 cut(s) 383
XspI CTAG 1 cut(s) 479
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.