Rh7CG252200

F-box protein At3g07870-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0019046
Physical Location & Seq
Forward (+)
24366411 .. 24366965
555 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG252200.1

Sequence Viewer

Length: 555 bp
ATGGTTTGCTTCCGTACTCAGTCTGCACTCTGCAGACCCAGAAGAAACTTCTTGGTCGATATTGACATTAATAGCTCAAGCAGCAGCAGCTACAACTTGGCAGCAGTCAAGCTTCCCCAAGATGGAATCGCAGACTCATACGGCATGTCATATGATTTTGTAAAGATTGTAGGTTCATGCAACGGCCTCGTATGTCTGAAGGACTCATCGCGCTACAGTCACCCTTTTCACATATGCAATCCCATGACTGGTGAGTCTGTGCACTTGTCTCCTCCTCCAATGCGTCCCCCCAAAGATGAGTGGAAGCCGTTTGTTTCTGGTTTTGGGTTTAGTCCCATCAGCCGTGTTTATAAGGTCCTAGTTATGCACTGCAACGAATCAAAGGCCAAGGTTTTGACAGTTGGGTCTAAGAATTGGAGAAGCATTAATGCAAATAATTACGAGTTGTTTCCTCCTCATAACTCACGCATGGTTTATATGAATGGATATCTTTACATTGTAGTTCATGATCGTCTTCGAAGCACGTACTTGTCCAGTTTCTATATGTGCCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBA_1 FBA_3

Protein Analysis

184

Amino Acids

20.9

Weight (kDa)

9.2

Isoelectric Point (pI)

57.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_KIB1-4 PF03478 39 - 170 1.5e-08 KIB1-4 beta-propeller
FBA_3 PF08268 49 - 172 1.6e-18 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019046)

Species Orthologous Gene IDs
rosa_laevigata RLG00000003237
rosa_multiflora Rmu_sc0000841.1_g000026
rosa_roxburghii Rroxscaffold_3G00250670
rosa_samantha Rh7AG236500 Rh7BG232000 Rh7BG232100 Rh7CG252200 Rh7CG252300 Rh7DG242500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 351
AasI GACNNNNNNGTC 2 cut(s) 253, 403
AccII CGCG 1 cut(s) 211
AcuI CTGAAG 1 cut(s) 218
AfaI GTAC 2 cut(s) 16, 527
AfiI CCNNNNNNNGG 2 cut(s) 122, 248
AluBI AGCT 3 cut(s) 75, 90, 112
AluI AGCT 3 cut(s) 75, 90, 112
Alw21I GWGCWC 1 cut(s) 264
Alw26I GTCTC 1 cut(s) 273
Alw44I GTGCAC 1 cut(s) 260
AoxI GGCC 2 cut(s) 184, 384
ApaLI GTGCAC 1 cut(s) 260
ApeKI GCWGC 4 cut(s) 81, 84, 87, 101
AseI ATTAAT 2 cut(s) 69, 426
AspLEI GCGC 1 cut(s) 213
AspS9I GGNCC 1 cut(s) 355
AsuHPI GGTGA 2 cut(s) 212, 263
AsuII TTCGAA 1 cut(s) 517
AvaII GGWCC 1 cut(s) 355
BaeGI GKGCMC 1 cut(s) 264
BbsI GAAGAC 1 cut(s) 506
Bbv12I GWGCWC 1 cut(s) 264
BbvI GCAGC 4 cut(s) 93, 96, 99, 113
BccI CCATC 2 cut(s) 116, 344
BceAI ACGGC 4 cut(s) 157, 199, 292, 327
BcgI CGANNNNNNTGC 2 cut(s) 169, 203
BcoDI GTCTC 1 cut(s) 273
BfaI CTAG 1 cut(s) 359
BfmI CTRYAG 2 cut(s) 31, 214
BisI GCNGC 4 cut(s) 82, 85, 88, 102
BlsI GCNGC 4 cut(s) 83, 86, 89, 103
Bme18I GGWCC 1 cut(s) 355
BmgT120I GGNCC 1 cut(s) 355
BpiI GAAGAC 1 cut(s) 506
Bpu14I TTCGAA 1 cut(s) 517
BpuEI CTTGAG 1 cut(s) 61
BsaAI YACGTR 1 cut(s) 525
BsaJI CCNNGG 1 cut(s) 387
Bsc4I CCNNNNNNNGG 2 cut(s) 122, 248
Bse1I ACTGG 2 cut(s) 253, 534
BseDI CCNNGG 1 cut(s) 387
BseLI CCNNNNNNNGG 2 cut(s) 122, 248
BseMII CTCAG 1 cut(s) 32
BseNI ACTGG 2 cut(s) 253, 534
BseRI GAGGAG 3 cut(s) 261, 264, 444
BseSI GKGCMC 1 cut(s) 264
BseXI GCAGC 4 cut(s) 93, 96, 99, 113
BsgI GTGCAG 1 cut(s) 9
Bsh1236I CGCG 1 cut(s) 211
BshFI GGCC 2 cut(s) 186, 386
BsiHKAI GWGCWC 1 cut(s) 264
BslFI GGGAC 2 cut(s) 270, 318
BslI CCNNNNNNNGG 2 cut(s) 122, 248
BsmAI GTCTC 1 cut(s) 273
BsmFI GGGAC 2 cut(s) 270, 318
BsnI GGCC 2 cut(s) 186, 386
Bsp119I TTCGAA 1 cut(s) 517
Bsp1286I GDGCHC 1 cut(s) 264
Bsp143I GATC 1 cut(s) 508
BspANI GGCC 2 cut(s) 186, 386
BspCNI CTCAG 1 cut(s) 31
BspFNI CGCG 1 cut(s) 211
BspHI TCATGA 1 cut(s) 505
BspMAI CTGCAG 1 cut(s) 35
BspT104I TTCGAA 1 cut(s) 517
BsrI ACTGG 2 cut(s) 253, 534
BssECI CCNNGG 1 cut(s) 387
BssMI GATC 1 cut(s) 508
BssT1I CCWWGG 1 cut(s) 387
Bst4CI ACNGT 2 cut(s) 218, 400
BstBAI YACGTR 1 cut(s) 525
BstBI TTCGAA 1 cut(s) 517
BstDEI CTNAG 2 cut(s) 18, 408
BstFNI CGCG 1 cut(s) 211
BstHHI GCGC 1 cut(s) 213
BstKTI GATC 1 cut(s) 511
BstMAI GTCTC 1 cut(s) 273
BstMBI GATC 1 cut(s) 508
BstMWI GCNNNNNNNGC 2 cut(s) 81, 87
BstNSI RCATGY 1 cut(s) 148
BstSFI CTRYAG 2 cut(s) 31, 214
BstSLI GKGCMC 1 cut(s) 264
BstUI CGCG 1 cut(s) 211
BstV1I GCAGC 4 cut(s) 93, 96, 99, 113
BstV2I GAAGAC 1 cut(s) 506
BsuRI GGCC 2 cut(s) 186, 386
BtgZI GCGATG 1 cut(s) 192
BtsI GCAGTG 1 cut(s) 367
BtsIMutI CAGTG 1 cut(s) 367
CciI TCATGA 1 cut(s) 505
CfoI GCGC 1 cut(s) 213
Cfr13I GGNCC 1 cut(s) 355
CseI GACGC 1 cut(s) 272
Csp6I GTAC 2 cut(s) 15, 526
CviAII CATG 5 cut(s) 145, 177, 244, 469, 506
CviJI RGCY 7 cut(s) 75, 90, 112, 186, 307, 342, 386
CviKI_1 RGCY 7 cut(s) 75, 90, 112, 186, 307, 342, 386
CviQI GTAC 2 cut(s) 15, 526
DdeI CTNAG 2 cut(s) 18, 408
DpnI GATC 1 cut(s) 510
DpnII GATC 1 cut(s) 508
DrdI GACNNNNNNGTC 2 cut(s) 253, 403
DseDI GACNNNNNNGTC 2 cut(s) 253, 403
Eco130I CCWWGG 1 cut(s) 387
Eco32I GATATC 1 cut(s) 488
Eco47I GGWCC 1 cut(s) 355
Eco57I CTGAAG 1 cut(s) 218
EcoO109I RGGNCCY 1 cut(s) 355
EcoRV GATATC 1 cut(s) 488
EcoT14I CCWWGG 1 cut(s) 387
ErhI CCWWGG 1 cut(s) 387
FaeI CATG 5 cut(s) 148, 180, 247, 472, 509
FaqI GGGAC 2 cut(s) 270, 318
FatI CATG 5 cut(s) 144, 176, 243, 468, 505
FauNDI CATATG 2 cut(s) 151, 233
Fnu4HI GCNGC 4 cut(s) 82, 85, 88, 102
Fsp4HI GCNGC 4 cut(s) 82, 85, 88, 102
FspBI CTAG 1 cut(s) 359
GlaI GCGC 1 cut(s) 212
GluI GCNGC 4 cut(s) 82, 85, 88, 102
HaeIII GGCC 2 cut(s) 186, 386
HgaI GACGC 1 cut(s) 272
HhaI GCGC 1 cut(s) 213
Hin1II CATG 5 cut(s) 148, 180, 247, 472, 509
Hin6I GCGC 1 cut(s) 211
HinP1I GCGC 1 cut(s) 211
HindIII AAGCTT 1 cut(s) 110
HinfI GANTC 5 cut(s) 126, 134, 203, 254, 377
HphI GGTGA 2 cut(s) 212, 263
Hpy166II GTNNAC 1 cut(s) 262
Hpy188I TCNGA 1 cut(s) 198
Hpy188III TCNNGA 1 cut(s) 506
Hpy8I GTNNAC 1 cut(s) 262
HpyAV CCTTC 1 cut(s) 193
HpyCH4III ACNGT 2 cut(s) 218, 400
HpyCH4IV ACGT 1 cut(s) 524
HpyCH4V TGCA 8 cut(s) 26, 33, 180, 237, 262, 367, 372, 431
HpyF10VI GCNNNNNNNGC 2 cut(s) 81, 87
HpyF3I CTNAG 2 cut(s) 18, 408
HpySE526I ACGT 1 cut(s) 524
Hsp92II CATG 5 cut(s) 148, 180, 247, 472, 509
HspAI GCGC 1 cut(s) 211
Kzo9I GATC 1 cut(s) 508
LpnPI CCDG 4 cut(s) 52, 234, 303, 547
Lsp1109I GCAGC 4 cut(s) 93, 96, 99, 113
MaeI CTAG 1 cut(s) 359
MaeII ACGT 1 cut(s) 524
MaeIII GTNAC 1 cut(s) 218
MalI GATC 1 cut(s) 510
MboI GATC 1 cut(s) 508
MboII GAAGA 2 cut(s) 54, 506
MhlI GDGCHC 1 cut(s) 264
MluCI AATT 2 cut(s) 412, 436
MlyI GAGTC 3 cut(s) 128, 197, 263
MnlI CCTC 5 cut(s) 197, 282, 285, 462, 465
MseI TTAA 2 cut(s) 69, 426
MvnI CGCG 1 cut(s) 211
MwoI GCNNNNNNNGC 2 cut(s) 81, 87
NdeI CATATG 2 cut(s) 151, 233
NdeII GATC 1 cut(s) 508
NlaIII CATG 5 cut(s) 148, 180, 247, 472, 509
NmuCI GTSAC 1 cut(s) 218
NspI RCATGY 1 cut(s) 148
NspV TTCGAA 1 cut(s) 517
PagI TCATGA 1 cut(s) 505
PfeI GAWTC 2 cut(s) 126, 377
PkrI GCNGC 4 cut(s) 83, 86, 89, 103
PleI GAGTC 3 cut(s) 128, 197, 262
PpsI GAGTC 3 cut(s) 128, 197, 262
Ppu21I YACGTR 1 cut(s) 525
PpuMI RGGWCCY 1 cut(s) 355
PshBI ATTAAT 2 cut(s) 69, 426
PsiI TTATAA 1 cut(s) 351
Psp5II RGGWCCY 1 cut(s) 355
PspPI GGNCC 1 cut(s) 355
PspPPI RGGWCCY 1 cut(s) 355
PstI CTGCAG 1 cut(s) 35
RsaI GTAC 2 cut(s) 16, 527
RsaNI GTAC 2 cut(s) 15, 526
SaqAI TTAA 2 cut(s) 69, 426
SatI GCNGC 4 cut(s) 82, 85, 88, 102
Sau3AI GATC 1 cut(s) 508
Sau96I GGNCC 1 cut(s) 355
SchI GAGTC 3 cut(s) 128, 197, 263
SduI GDGCHC 1 cut(s) 264
SetI ASST 7 cut(s) 77, 92, 114, 175, 357, 393, 527
SfcI CTRYAG 2 cut(s) 31, 214
SfuI TTCGAA 1 cut(s) 517
SinI GGWCC 1 cut(s) 355
SmlI CTYRAG 1 cut(s) 76
SmoI CTYRAG 1 cut(s) 76
Sse9I AATT 2 cut(s) 412, 436
SspMI CTAG 1 cut(s) 359
StyI CCWWGG 1 cut(s) 387
TaaI ACNGT 2 cut(s) 218, 400
TaiI ACGT 1 cut(s) 527
TaqI TCGA 2 cut(s) 57, 517
TasI AATT 2 cut(s) 412, 436
TfiI GAWTC 2 cut(s) 126, 377
Tru1I TTAA 2 cut(s) 69, 426
Tru9I TTAA 2 cut(s) 69, 426
TscAI CASTG 1 cut(s) 374
TseFI GTSAC 1 cut(s) 218
TseI GCWGC 4 cut(s) 81, 84, 87, 101
Tsp45I GTSAC 1 cut(s) 218
TspDTI ATGAA 3 cut(s) 165, 494, 494
TspRI CASTG 1 cut(s) 374
VneI GTGCAC 1 cut(s) 260
VpaK11BI GGWCC 1 cut(s) 355
VspI ATTAAT 2 cut(s) 69, 426
XceI RCATGY 1 cut(s) 148
XspI CTAG 1 cut(s) 359
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.