Rh7BG232100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0019046
Physical Location & Seq
Forward (+)
20304002 .. 20304643
642 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG232100.1

Sequence Viewer

Length: 345 bp
ATGGAAGAGGAGGCTAAATTGGCTAATGGGATGCCATCCACGATTACGAGTGCATGTGCCTTTACACCAAGCTTTGTTCCCCTAAATGTTATGATCAGGGGGAGGTGTAGACTTTCGGGCTTTCGGGCCGGATGTCGTCTTGATGACGATGAAGAAGGGGTTCCACGTACCTTTGGGGCGGTAGGCGAGCTAAATCGACGTCCCGTATTCGAAGAAGGTGCCGAGGTTGAGAGTGAGCTCCTTGGACTAGCCGGCGACGATTTGGAATTGGAATGGCAAGCCCAAGATGCTGAGAGGCACTTTGACCCTCCGCAATGGCTTTTGGTCCTCCCGGAATTTGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

114

Amino Acids

12.67

Weight (kDa)

4.32

Isoelectric Point (pI)

53.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019046)

Species Orthologous Gene IDs
rosa_laevigata RLG00000003237
rosa_multiflora Rmu_sc0000841.1_g000026
rosa_roxburghii Rroxscaffold_3G00250670
rosa_samantha Rh7AG236500 Rh7BG232000 Rh7BG232100 Rh7CG252200 Rh7CG252300 Rh7DG242500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 202
AccB1I GGYRCC 1 cut(s) 218
AccI GTMKAC 1 cut(s) 109
AciI CCGC 2 cut(s) 179, 311
AcsI RAATTY 1 cut(s) 335
AcyI GRCGYC 1 cut(s) 199
AfaI GTAC 1 cut(s) 169
AluBI AGCT 3 cut(s) 72, 190, 238
AluI AGCT 3 cut(s) 72, 190, 238
Alw21I GWGCWC 1 cut(s) 240
AoxI GGCC 1 cut(s) 126
ApoI RAATTY 1 cut(s) 335
Asp700I GAANNNNTTC 1 cut(s) 159
AspS9I GGNCC 2 cut(s) 126, 325
AsuC2I CCSGG 1 cut(s) 332
AsuII TTCGAA 1 cut(s) 210
AvaII GGWCC 1 cut(s) 325
BanI GGYRCC 1 cut(s) 218
BanII GRGCYC 1 cut(s) 240
Bbv12I GWGCWC 1 cut(s) 240
BccI CCATC 1 cut(s) 43
BcgI CGANNNNNNTGC 2 cut(s) 200, 234
BclI TGATCA 1 cut(s) 93
BcnI CCSGG 1 cut(s) 332
BfaI CTAG 1 cut(s) 248
Bme1390I CCNGG 1 cut(s) 332
Bme18I GGWCC 1 cut(s) 325
BmgT120I GGNCC 2 cut(s) 126, 325
BmiI GGNNCC 2 cut(s) 162, 220
BmrFI CCNGG 1 cut(s) 332
BmsI GCATC 2 cut(s) 21, 277
Bpu14I TTCGAA 1 cut(s) 210
BpuMI CCSGG 1 cut(s) 332
BsaAI YACGTR 1 cut(s) 167
BsaHI GRCGYC 1 cut(s) 199
BsaJI CCNNGG 2 cut(s) 222, 241
Bse118I RCCGGY 1 cut(s) 251
Bse3DI GCAATG 1 cut(s) 320
BseDI CCNNGG 2 cut(s) 222, 241
BseGI GGATG 3 cut(s) 35, 36, 137
BseMI GCAATG 1 cut(s) 320
BseMII CTCAG 1 cut(s) 282
BseRI GAGGAG 1 cut(s) 23
BshFI GGCC 1 cut(s) 128
BshNI GGYRCC 1 cut(s) 218
BsiHKAI GWGCWC 1 cut(s) 240
BsiSI CCGG 3 cut(s) 129, 252, 332
BslFI GGGAC 1 cut(s) 186
BsmFI GGGAC 1 cut(s) 186
BsnI GGCC 1 cut(s) 128
Bsp119I TTCGAA 1 cut(s) 210
Bsp1286I GDGCHC 1 cut(s) 240
Bsp143I GATC 1 cut(s) 93
BspACI CCGC 2 cut(s) 179, 311
BspANI GGCC 1 cut(s) 128
BspCNI CTCAG 1 cut(s) 283
BspLI GGNNCC 2 cut(s) 162, 220
BspT104I TTCGAA 1 cut(s) 210
BspT107I GGYRCC 1 cut(s) 218
BsrDI GCAATG 1 cut(s) 320
BsrFI RCCGGY 1 cut(s) 251
BssAI RCCGGY 1 cut(s) 251
BssECI CCNNGG 2 cut(s) 222, 241
BssMI GATC 1 cut(s) 93
BssNI GRCGYC 1 cut(s) 199
BssT1I CCWWGG 1 cut(s) 241
BstACI GRCGYC 1 cut(s) 199
BstBAI YACGTR 1 cut(s) 167
BstBI TTCGAA 1 cut(s) 210
BstC8I GCNNGC 3 cut(s) 188, 253, 279
BstDEI CTNAG 1 cut(s) 291
BstF5I GGATG 3 cut(s) 35, 36, 137
BstKTI GATC 1 cut(s) 96
BstMBI GATC 1 cut(s) 93
BstMWI GCNNNNNNNGC 2 cut(s) 20, 287
BstNSI RCATGY 1 cut(s) 57
BstSCI CCNGG 1 cut(s) 330
BsuRI GGCC 1 cut(s) 128
BtsCI GGATG 3 cut(s) 35, 36, 137
Cac8I GCNNGC 3 cut(s) 188, 253, 279
Cfr10I RCCGGY 1 cut(s) 251
Cfr13I GGNCC 2 cut(s) 126, 325
Csp6I GTAC 1 cut(s) 168
CviAII CATG 1 cut(s) 54
CviQI GTAC 1 cut(s) 168
DdeI CTNAG 1 cut(s) 291
DpnI GATC 1 cut(s) 95
DpnII GATC 1 cut(s) 93
Ecl136II GAGCTC 1 cut(s) 238
Eco130I CCWWGG 1 cut(s) 241
Eco24I GRGCYC 1 cut(s) 240
Eco47I GGWCC 1 cut(s) 325
Eco53kI GAGCTC 1 cut(s) 238
EcoICRI GAGCTC 1 cut(s) 238
EcoT14I CCWWGG 1 cut(s) 241
EcoT38I GRGCYC 1 cut(s) 240
ErhI CCWWGG 1 cut(s) 241
FaeI CATG 1 cut(s) 57
FaiI YATR 2 cut(s) 55, 92
FaqI GGGAC 1 cut(s) 186
FatI CATG 1 cut(s) 53
FbaI TGATCA 1 cut(s) 93
FblI GTMKAC 1 cut(s) 109
FokI GGATG 3 cut(s) 22, 43, 144
FriOI GRGCYC 1 cut(s) 240
FspBI CTAG 1 cut(s) 248
HaeIII GGCC 1 cut(s) 128
HapII CCGG 3 cut(s) 129, 252, 332
Hin1I GRCGYC 1 cut(s) 199
Hin1II CATG 1 cut(s) 57
HindIII AAGCTT 1 cut(s) 70
HpaII CCGG 3 cut(s) 129, 252, 332
Hpy166II GTNNAC 1 cut(s) 110
Hpy188III TCNNGA 1 cut(s) 140
Hpy8I GTNNAC 1 cut(s) 110
Hpy99I CGWCG 2 cut(s) 201, 260
HpyAV CCTTC 2 cut(s) 149, 209
HpyCH4IV ACGT 2 cut(s) 166, 199
HpyCH4V TGCA 1 cut(s) 53
HpyF10VI GCNNNNNNNGC 2 cut(s) 20, 287
HpyF3I CTNAG 1 cut(s) 291
HpySE526I ACGT 2 cut(s) 166, 199
Hsp92I GRCGYC 1 cut(s) 199
Hsp92II CATG 1 cut(s) 57
KroI GCCGGC 1 cut(s) 251
KroNI GCCGGC 1 cut(s) 253
Ksp22I TGATCA 1 cut(s) 93
Kzo9I GATC 1 cut(s) 93
LmnI GCTCC 1 cut(s) 243
LpnPI CCDG 3 cut(s) 82, 142, 265
LweI GCATC 2 cut(s) 21, 277
MaeI CTAG 1 cut(s) 248
MaeII ACGT 2 cut(s) 166, 199
MalI GATC 1 cut(s) 95
MboI GATC 1 cut(s) 93
MboII GAAGA 3 cut(s) 17, 164, 224
MhlI GDGCHC 1 cut(s) 240
MluCI AATT 3 cut(s) 17, 266, 335
MnlI CCTC 6 cut(s) 4, 96, 217, 288, 318, 338
MroNI GCCGGC 1 cut(s) 251
MroXI GAANNNNTTC 1 cut(s) 159
MspI CCGG 3 cut(s) 129, 252, 332
MspR9I CCNGG 1 cut(s) 332
MwoI GCNNNNNNNGC 2 cut(s) 20, 287
NaeI GCCGGC 1 cut(s) 253
NciI CCSGG 1 cut(s) 332
NdeII GATC 1 cut(s) 93
NgoMIV GCCGGC 1 cut(s) 251
NlaIII CATG 1 cut(s) 57
NlaIV GGNNCC 2 cut(s) 162, 220
NmeAIII GCCGAG 1 cut(s) 247
NspI RCATGY 1 cut(s) 57
NspV TTCGAA 1 cut(s) 210
PdiI GCCGGC 1 cut(s) 253
PdmI GAANNNNTTC 1 cut(s) 159
PfoI TCCNGGA 1 cut(s) 330
Ppu21I YACGTR 1 cut(s) 167
Psp124BI GAGCTC 1 cut(s) 240
PspN4I GGNNCC 2 cut(s) 162, 220
PspPI GGNCC 2 cut(s) 126, 325
RsaI GTAC 1 cut(s) 169
RsaNI GTAC 1 cut(s) 168
SacI GAGCTC 1 cut(s) 240
Sau3AI GATC 1 cut(s) 93
Sau96I GGNCC 2 cut(s) 126, 325
ScrFI CCNGG 1 cut(s) 332
SduI GDGCHC 1 cut(s) 240
SetI ASST 9 cut(s) 74, 107, 169, 173, 192, 202, 220, 228, 240
SfaNI GCATC 2 cut(s) 21, 277
SfuI TTCGAA 1 cut(s) 210
SinI GGWCC 1 cut(s) 325
Sse9I AATT 3 cut(s) 17, 266, 335
SsiI CCGC 2 cut(s) 179, 311
SspMI CTAG 1 cut(s) 248
SstI GAGCTC 1 cut(s) 240
StyD4I CCNGG 1 cut(s) 330
StyI CCWWGG 1 cut(s) 241
TaiI ACGT 2 cut(s) 169, 202
TaqI TCGA 2 cut(s) 196, 210
TasI AATT 3 cut(s) 17, 266, 335
TspDTI ATGAA 1 cut(s) 165
VpaK11BI GGWCC 1 cut(s) 325
XapI RAATTY 1 cut(s) 335
XceI RCATGY 1 cut(s) 57
XmiI GTMKAC 1 cut(s) 109
XmnI GAANNNNTTC 1 cut(s) 159
XspI CTAG 1 cut(s) 248
ZraI GACGTC 1 cut(s) 200
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.