A Receptor for Ubiquitination Targets
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| Species | Orthologous Gene IDs |
|---|---|
| rosa_laevigata | RLG00000003237 |
| rosa_multiflora | Rmu_sc0000841.1_g000026 |
| rosa_roxburghii | Rroxscaffold_3G00250670 |
| rosa_samantha | Rh7AG236500 Rh7BG232000 Rh7BG232100 Rh7CG252200 Rh7CG252300 Rh7DG242500 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 185 |
| AciI | CCGC | 1 cut(s) | 180 |
| AcsI | RAATTY | 1 cut(s) | 44 |
| AdeI | CACNNNGTG | 1 cut(s) | 73 |
| AfaI | GTAC | 2 cut(s) | 93, 166 |
| AluBI | AGCT | 2 cut(s) | 97, 264 |
| AluI | AGCT | 2 cut(s) | 97, 264 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 100 |
| ApoI | RAATTY | 1 cut(s) | 44 |
| AspS9I | GGNCC | 1 cut(s) | 30 |
| AvaII | GGWCC | 1 cut(s) | 30 |
| BccI | CCATC | 2 cut(s) | 187, 235 |
| BclI | TGATCA | 1 cut(s) | 285 |
| BfaI | CTAG | 1 cut(s) | 122 |
| BfuAI | ACCTGC | 1 cut(s) | 185 |
| BisI | GCNGC | 1 cut(s) | 181 |
| BlsI | GCNGC | 1 cut(s) | 182 |
| Bme18I | GGWCC | 1 cut(s) | 30 |
| BmgT120I | GGNCC | 1 cut(s) | 30 |
| BmiI | GGNNCC | 1 cut(s) | 32 |
| BmsI | GCATC | 1 cut(s) | 213 |
| BsaAI | YACGTR | 1 cut(s) | 137 |
| BsaJI | CCNNGG | 1 cut(s) | 188 |
| BseDI | CCNNGG | 1 cut(s) | 188 |
| BseGI | GGATG | 3 cut(s) | 198, 227, 228 |
| BseRI | GAGGAG | 1 cut(s) | 215 |
| Bsp143I | GATC | 1 cut(s) | 285 |
| BspACI | CCGC | 1 cut(s) | 180 |
| BspLI | GGNNCC | 1 cut(s) | 32 |
| BspMI | ACCTGC | 1 cut(s) | 185 |
| BssECI | CCNNGG | 1 cut(s) | 188 |
| BssMI | GATC | 1 cut(s) | 285 |
| BssT1I | CCWWGG | 1 cut(s) | 188 |
| BstBAI | YACGTR | 1 cut(s) | 137 |
| BstC8I | GCNNGC | 1 cut(s) | 185 |
| BstDEI | CTNAG | 1 cut(s) | 170 |
| BstF5I | GGATG | 3 cut(s) | 198, 227, 228 |
| BstKTI | GATC | 1 cut(s) | 288 |
| BstMBI | GATC | 1 cut(s) | 285 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 127, 212 |
| BstNSI | RCATGY | 1 cut(s) | 249 |
| BtsCI | GGATG | 3 cut(s) | 198, 227, 228 |
| BveI | ACCTGC | 1 cut(s) | 185 |
| Cac8I | GCNNGC | 1 cut(s) | 185 |
| CaiI | CAGNNNCTG | 1 cut(s) | 100 |
| Cfr13I | GGNCC | 1 cut(s) | 30 |
| Csp6I | GTAC | 2 cut(s) | 92, 165 |
| CviAII | CATG | 2 cut(s) | 35, 246 |
| CviJI | RGCY | 6 cut(s) | 97, 121, 187, 206, 215, 264 |
| CviKI_1 | RGCY | 6 cut(s) | 97, 121, 187, 206, 215, 264 |
| CviQI | GTAC | 2 cut(s) | 92, 165 |
| DdeI | CTNAG | 1 cut(s) | 170 |
| DpnI | GATC | 1 cut(s) | 287 |
| DpnII | GATC | 1 cut(s) | 285 |
| DraI | TTTAAA | 1 cut(s) | 61 |
| DraIII | CACNNNGTG | 1 cut(s) | 73 |
| Eco130I | CCWWGG | 1 cut(s) | 188 |
| Eco47I | GGWCC | 1 cut(s) | 30 |
| EcoT14I | CCWWGG | 1 cut(s) | 188 |
| ErhI | CCWWGG | 1 cut(s) | 188 |
| FaeI | CATG | 2 cut(s) | 38, 249 |
| FaiI | YATR | 8 cut(s) | 12, 36, 50, 88, 153, 247, 282, 284 |
| FatI | CATG | 2 cut(s) | 34, 245 |
| FbaI | TGATCA | 1 cut(s) | 285 |
| Fnu4HI | GCNGC | 1 cut(s) | 181 |
| FokI | GGATG | 3 cut(s) | 205, 214, 235 |
| Fsp4HI | GCNGC | 1 cut(s) | 181 |
| FspBI | CTAG | 1 cut(s) | 122 |
| GluI | GCNGC | 1 cut(s) | 181 |
| Hin1II | CATG | 2 cut(s) | 38, 249 |
| HindIII | AAGCTT | 1 cut(s) | 262 |
| HinfI | GANTC | 2 cut(s) | 23, 147 |
| Hpy166II | GTNNAC | 1 cut(s) | 19 |
| Hpy8I | GTNNAC | 1 cut(s) | 19 |
| HpyAV | CCTTC | 1 cut(s) | 110 |
| HpyCH4IV | ACGT | 1 cut(s) | 136 |
| HpyCH4V | TGCA | 1 cut(s) | 245 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 127, 212 |
| HpyF3I | CTNAG | 1 cut(s) | 170 |
| HpySE526I | ACGT | 1 cut(s) | 136 |
| Hsp92II | CATG | 2 cut(s) | 38, 249 |
| Ksp22I | TGATCA | 1 cut(s) | 285 |
| Kzo9I | GATC | 1 cut(s) | 285 |
| LpnPI | CCDG | 2 cut(s) | 190, 274 |
| LweI | GCATC | 1 cut(s) | 213 |
| MaeI | CTAG | 1 cut(s) | 122 |
| MaeII | ACGT | 1 cut(s) | 136 |
| MaeIII | GTNAC | 1 cut(s) | 132 |
| MalI | GATC | 1 cut(s) | 287 |
| MboI | GATC | 1 cut(s) | 285 |
| MluCI | AATT | 5 cut(s) | 7, 44, 78, 209, 277 |
| MlyI | GAGTC | 1 cut(s) | 32 |
| MnlI | CCTC | 3 cut(s) | 133, 193, 196 |
| MseI | TTAA | 2 cut(s) | 60, 81 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 127, 212 |
| NdeII | GATC | 1 cut(s) | 285 |
| NlaIII | CATG | 2 cut(s) | 38, 249 |
| NlaIV | GGNNCC | 1 cut(s) | 32 |
| NspI | RCATGY | 1 cut(s) | 249 |
| PfeI | GAWTC | 1 cut(s) | 147 |
| PkrI | GCNGC | 1 cut(s) | 182 |
| PleI | GAGTC | 1 cut(s) | 31 |
| PpsI | GAGTC | 1 cut(s) | 31 |
| Ppu21I | YACGTR | 1 cut(s) | 137 |
| PspN4I | GGNNCC | 1 cut(s) | 32 |
| PspPI | GGNCC | 1 cut(s) | 30 |
| PstNI | CAGNNNCTG | 1 cut(s) | 100 |
| RsaI | GTAC | 2 cut(s) | 93, 166 |
| RsaNI | GTAC | 2 cut(s) | 92, 165 |
| SaqAI | TTAA | 2 cut(s) | 60, 81 |
| SatI | GCNGC | 1 cut(s) | 181 |
| Sau3AI | GATC | 1 cut(s) | 285 |
| Sau96I | GGNCC | 1 cut(s) | 30 |
| SchI | GAGTC | 1 cut(s) | 32 |
| SetI | ASST | 4 cut(s) | 99, 139, 179, 266 |
| SfaNI | GCATC | 1 cut(s) | 213 |
| SinI | GGWCC | 1 cut(s) | 30 |
| Sse9I | AATT | 5 cut(s) | 7, 44, 78, 209, 277 |
| SsiI | CCGC | 1 cut(s) | 180 |
| SspMI | CTAG | 1 cut(s) | 122 |
| StyI | CCWWGG | 1 cut(s) | 188 |
| TaiI | ACGT | 1 cut(s) | 139 |
| TasI | AATT | 5 cut(s) | 7, 44, 78, 209, 277 |
| TatI | WGTACW | 1 cut(s) | 164 |
| TauI | GCSGC | 1 cut(s) | 183 |
| TfiI | GAWTC | 1 cut(s) | 147 |
| Tru1I | TTAA | 2 cut(s) | 60, 81 |
| Tru9I | TTAA | 2 cut(s) | 60, 81 |
| TspDTI | ATGAA | 1 cut(s) | 51 |
| TspGWI | ACGGA | 1 cut(s) | 159 |
| VpaK11BI | GGWCC | 1 cut(s) | 30 |
| XapI | RAATTY | 1 cut(s) | 44 |
| XceI | RCATGY | 1 cut(s) | 249 |
| XspI | CTAG | 1 cut(s) | 122 |