RLG00000003241

Belongs to the mannose-6-phosphate isomerase type 1 family

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
Physical Location & Seq
Forward (+)
45991783 .. 45992385
603 bp
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UTR
Exon/CDS
Intron
RLM00000003241

Sequence Viewer

Length: 366 bp
ATGGAAAATCAGGTGAGGCAGTTGACAGAAAAGGAGCAACTGGTATTGGAACTGGAAAGGCAATATCCAGGTGACGTGGATGTCATATCTGCTTTCTTTCTCAACTATGTCAAGCTTAGTCCTGGAGAAGCACTATACCTCGGAGCAAATGAACCATGCCTATATGTTCGGTACCTCCCACCCTTCGACGAATTTGAGGTTGATCGATGCCATCTTCCCCAGGGGGAATCGGTGGAATTTCCTGCAGTCCAAGGTCCTTTCATTTTCGTCATCACTTTTGGGGAGGGATTCATATATCCAAGCAATTTTACAAGAGATATAAATGTCACACAAGGAGAGGTTCTTTTCGTGCCTGCAGATACTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000032 GO:0001101 GO:0003006 GO:0003674 GO:0003824 GO:0004476 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0005996 GO:0006056 GO:0006057 GO:0006082 GO:0006139 GO:0006464 GO:0006486 GO:0006725 GO:0006732 GO:0006766 GO:0006767 GO:0006807 GO:0007275 GO:0007584 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009108 GO:0009110 GO:0009225 GO:0009226 GO:0009298 GO:0009314 GO:0009416 GO:0009605 GO:0009628 GO:0009636 GO:0009642 GO:0009646 GO:0009743 GO:0009744 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0009991 GO:0010033 GO:0010035 GO:0010038 GO:0010043 GO:0010154 GO:0014070 GO:0016043 GO:0016051 GO:0016053 GO:0016853 GO:0016860 GO:0016861 GO:0017085 GO:0018130 GO:0019438 GO:0019538 GO:0019673 GO:0019752 GO:0019852 GO:0019853 GO:0022414 GO:0031505 GO:0031506 GO:0031667 GO:0032025 GO:0032501 GO:0032502 GO:0033273 GO:0033591 GO:0034284 GO:0034285 GO:0034641 GO:0034645 GO:0034654 GO:0036211 GO:0042221 GO:0042364 GO:0042493 GO:0042546 GO:0043170 GO:0043412 GO:0043413 GO:0043436 GO:0044036 GO:0044038 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0045229 GO:0046364 GO:0046394 GO:0046483 GO:0046680 GO:0046686 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0051186 GO:0051188 GO:0055086 GO:0061458 GO:0070085 GO:0070589 GO:0071554 GO:0071555 GO:0071704 GO:0071840 GO:0071852 GO:1901135 GO:1901137 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901700
Pfam Domains
Protein Families

Protein Analysis

122

Amino Acids

13.81

Weight (kDa)

4.2

Isoelectric Point (pI)

34.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 80
Acc65I GGTACC 1 cut(s) 171
AccB1I GGYRCC 1 cut(s) 171
AcsI RAATTY 2 cut(s) 191, 236
AfaI GTAC 1 cut(s) 173
AjiI CACGTC 1 cut(s) 76
AjnI CCWGG 3 cut(s) 67, 121, 219
AluBI AGCT 1 cut(s) 115
AluI AGCT 1 cut(s) 115
ApoI RAATTY 2 cut(s) 191, 236
Asp718I GGTACC 1 cut(s) 171
AspS9I GGNCC 1 cut(s) 254
AsuHPI GGTGA 2 cut(s) 25, 83
AvaII GGWCC 1 cut(s) 254
BanI GGYRCC 1 cut(s) 171
BccI CCATC 1 cut(s) 219
BciT130I CCWGG 3 cut(s) 69, 123, 221
BfmI CTRYAG 2 cut(s) 243, 354
Bme1390I CCNGG 3 cut(s) 69, 123, 221
Bme18I GGWCC 1 cut(s) 254
BmgBI CACGTC 1 cut(s) 76
BmgT120I GGNCC 1 cut(s) 254
BmiI GGNNCC 1 cut(s) 173
BmrFI CCNGG 3 cut(s) 69, 123, 221
BmsI GCATC 1 cut(s) 197
BpmI CTGGAG 1 cut(s) 144
Bsa29I ATCGAT 1 cut(s) 205
BsaJI CCNNGG 4 cut(s) 139, 219, 220, 250
Bse1I ACTGG 2 cut(s) 45, 57
BseBI CCWGG 3 cut(s) 69, 123, 221
BseCI ATCGAT 1 cut(s) 205
BseDI CCNNGG 4 cut(s) 139, 219, 220, 250
BseGI GGATG 1 cut(s) 85
BseNI ACTGG 2 cut(s) 45, 57
BshNI GGYRCC 1 cut(s) 171
BshVI ATCGAT 1 cut(s) 205
Bsp143I GATC 1 cut(s) 202
BspDI ATCGAT 1 cut(s) 205
BspLI GGNNCC 1 cut(s) 173
BspMAI CTGCAG 2 cut(s) 247, 358
BspT107I GGYRCC 1 cut(s) 171
BsrI ACTGG 2 cut(s) 45, 57
BssECI CCNNGG 4 cut(s) 139, 219, 220, 250
BssMI GATC 1 cut(s) 202
BssT1I CCWWGG 1 cut(s) 250
Bst2UI CCWGG 3 cut(s) 69, 123, 221
BstC8I GCNNGC 1 cut(s) 354
BstDEI CTNAG 2 cut(s) 116, 363
BstF5I GGATG 1 cut(s) 85
BstKTI GATC 1 cut(s) 205
BstMBI GATC 1 cut(s) 202
BstNI CCWGG 3 cut(s) 69, 123, 221
BstSCI CCNGG 3 cut(s) 67, 121, 219
BstSFI CTRYAG 2 cut(s) 243, 354
Bsu15I ATCGAT 1 cut(s) 205
BsuTUI ATCGAT 1 cut(s) 205
BtrI CACGTC 1 cut(s) 76
BtsCI GGATG 1 cut(s) 85
Cac8I GCNNGC 1 cut(s) 354
Cfr13I GGNCC 1 cut(s) 254
ClaI ATCGAT 1 cut(s) 205
Csp6I GTAC 1 cut(s) 172
CviAII CATG 1 cut(s) 156
CviJI RGCY 1 cut(s) 115
CviKI_1 RGCY 1 cut(s) 115
CviQI GTAC 1 cut(s) 172
DdeI CTNAG 2 cut(s) 116, 363
DpnI GATC 1 cut(s) 204
DpnII GATC 1 cut(s) 202
DrdI GACNNNNNNGTC 1 cut(s) 80
DseDI GACNNNNNNGTC 1 cut(s) 80
Eco130I CCWWGG 1 cut(s) 250
Eco47I GGWCC 1 cut(s) 254
EcoO109I RGGNCCY 1 cut(s) 254
EcoRII CCWGG 3 cut(s) 67, 121, 219
EcoT14I CCWWGG 1 cut(s) 250
ErhI CCWWGG 1 cut(s) 250
FaeI CATG 1 cut(s) 159
FaiI YATR 9 cut(s) 86, 108, 136, 157, 163, 165, 293, 295, 320
FatI CATG 1 cut(s) 155
FokI GGATG 1 cut(s) 92
GsuI CTGGAG 1 cut(s) 144
Hin1II CATG 1 cut(s) 159
HincII GTYRAC 1 cut(s) 24
HindII GTYRAC 1 cut(s) 24
HindIII AAGCTT 1 cut(s) 113
HinfI GANTC 2 cut(s) 227, 288
HphI GGTGA 2 cut(s) 25, 83
Hpy166II GTNNAC 1 cut(s) 24
Hpy188I TCNGA 1 cut(s) 143
Hpy8I GTNNAC 1 cut(s) 24
Hpy99I CGWCG 1 cut(s) 191
HpyAV CCTTC 1 cut(s) 193
HpyCH4IV ACGT 1 cut(s) 75
HpyCH4V TGCA 2 cut(s) 245, 356
HpyF3I CTNAG 2 cut(s) 116, 363
HpySE526I ACGT 1 cut(s) 75
Hsp92II CATG 1 cut(s) 159
KpnI GGTACC 1 cut(s) 175
Kzo9I GATC 1 cut(s) 202
LmnI GCTCC 2 cut(s) 34, 143
LpnPI CCDG 9 cut(s) 26, 38, 54, 81, 108, 135, 206, 233, 255
LweI GCATC 1 cut(s) 197
MaeII ACGT 1 cut(s) 75
MaeIII GTNAC 2 cut(s) 71, 325
MalI GATC 1 cut(s) 204
MboI GATC 1 cut(s) 202
MboII GAAGA 1 cut(s) 206
MluCI AATT 3 cut(s) 191, 236, 304
MnlI CCTC 6 cut(s) 9, 149, 185, 190, 277, 331
MspR9I CCNGG 3 cut(s) 69, 123, 221
MvaI CCWGG 3 cut(s) 69, 123, 221
NdeII GATC 1 cut(s) 202
NlaIII CATG 1 cut(s) 159
NlaIV GGNNCC 1 cut(s) 173
NmuCI GTSAC 2 cut(s) 71, 325
PasI CCCWGGG 1 cut(s) 220
PfeI GAWTC 2 cut(s) 227, 288
PfoI TCCNGGA 1 cut(s) 121
PpuMI RGGWCCY 1 cut(s) 254
Psp5II RGGWCCY 1 cut(s) 254
Psp6I CCWGG 3 cut(s) 67, 121, 219
PspGI CCWGG 3 cut(s) 67, 121, 219
PspN4I GGNNCC 1 cut(s) 173
PspPI GGNCC 1 cut(s) 254
PspPPI RGGWCCY 1 cut(s) 254
PstI CTGCAG 2 cut(s) 247, 358
RsaI GTAC 1 cut(s) 173
RsaNI GTAC 1 cut(s) 172
Sau3AI GATC 1 cut(s) 202
Sau96I GGNCC 1 cut(s) 254
ScrFI CCNGG 3 cut(s) 69, 123, 221
SetI ASST 9 cut(s) 15, 73, 78, 117, 141, 177, 201, 256, 342
SfaNI GCATC 1 cut(s) 197
SfcI CTRYAG 2 cut(s) 243, 354
SinI GGWCC 1 cut(s) 254
Sse9I AATT 3 cut(s) 191, 236, 304
StyD4I CCNGG 3 cut(s) 67, 121, 219
StyI CCWWGG 1 cut(s) 250
TaiI ACGT 1 cut(s) 78
TaqI TCGA 2 cut(s) 186, 205
TasI AATT 3 cut(s) 191, 236, 304
TfiI GAWTC 2 cut(s) 227, 288
TseFI GTSAC 2 cut(s) 71, 325
Tsp45I GTSAC 2 cut(s) 71, 325
TspDTI ATGAA 3 cut(s) 165, 250, 280
VpaK11BI GGWCC 1 cut(s) 254
XapI RAATTY 2 cut(s) 191, 236
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.