Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000762.1

Orthogroup ID

OG0018644

Physical Location & Seq

Genomic Coordinates Reverse (-)

262330 .. 262953

Gene Structure 624 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000762.1_g000070.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 534 bp

atgtcagcaaccaaagagattgtaactacagctacaactgaactgaaaaatcgtttacacatggagaatcagcagttgacagagaaggagcaactggtgttggaattggaaaggcaatatgctgatgatgtgggtgtcttatctgctttctttctcaactatgtcaagcttagtcctggagaagcactataccgtggagcaaatgaaccccatgcctatgtgttcggtgactgcattgaatgcatggcaacttctgacaatgtagtcagggctggcctcactcccaagcatcgggatgtgaaaaccctttgttctatgcccacatacaagcagggctgccctgaaatcctgaaaggagttgccttaaattcttatgtgacaaggtacctcccaccttttgacgaatttgaggttgatcgatgccatcttccccagggagaatcggtggaatttcctgcagtccaaggtccttccatttttgtcgtcacttttggggagggaatcattatacaagcaattttacaggagatataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000032 GO:0001101 GO:0003006 GO:0003674 GO:0003824 GO:0004476 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0005996 GO:0006056 GO:0006057 GO:0006082 GO:0006139 GO:0006464 GO:0006486 GO:0006725 GO:0006732 GO:0006766 GO:0006767 GO:0006807 GO:0007275 GO:0007584 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009108 GO:0009110 GO:0009225 GO:0009226 GO:0009298 GO:0009314 GO:0009416 GO:0009605 GO:0009628 GO:0009636 GO:0009642 GO:0009646 GO:0009743 GO:0009744 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0009991 GO:0010033 GO:0010035 GO:0010038 GO:0010043 GO:0010154 GO:0014070 GO:0016043 GO:0016051 GO:0016053 GO:0016853 GO:0016860 GO:0016861 GO:0017085 GO:0018130 GO:0019438 GO:0019538 GO:0019673 GO:0019752 GO:0019852 GO:0019853 GO:0022414 GO:0031505 GO:0031506 GO:0031667 GO:0032025 GO:0032501 GO:0032502 GO:0033273 GO:0033591 GO:0034284 GO:0034285 GO:0034641 GO:0034645 GO:0034654 GO:0036211 GO:0042221 GO:0042364 GO:0042493 GO:0042546 GO:0043170 GO:0043412 GO:0043413 GO:0043436 GO:0044036 GO:0044038 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0045229 GO:0046364 GO:0046394 GO:0046483 GO:0046680 GO:0046686 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0051186 GO:0051188 GO:0055086 GO:0061458 GO:0070085 GO:0070589 GO:0071554 GO:0071555 GO:0071704 GO:0071840 GO:0071852 GO:1901135 GO:1901137 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00051 ko00520 ko01100 ko01110 ko01130 map00051 map00520 map01100 map01110 map01130

Pfam Domains

Protein Families

PMI_typeI

Protein Analysis

177

Amino Acids

19.77

Weight (kDa)

4.9

Isoelectric Point (pI)

46.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018644)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000003241 RLG00000003247
rosa_multiflora	Rmu_sc0000706.1_g000010 Rmu_sc0000762.1_g000011 Rmu_sc0000762.1_g000043 Rmu_sc0000762.1_g000052 Rmu_sc0000762.1_g000070 Rmu_ssc0000432.1_g000043
rosa_rugosa	Rorug07G0101900.1
rosa_samantha	Rh7BG231500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	263
Acc65I	GGTACC	1 cut(s)	384
AccB1I	GGYRCC	1 cut(s)	384
AcsI	RAATTY	3 cut(s)	367, 404, 449
AfaI	GTAC	1 cut(s)	386
AfiI	CCNNNNNNNGG	1 cut(s)	291
AgsI	TTSAA	1 cut(s)	239
AjnI	CCWGG	2 cut(s)	175, 432
AluBI	AGCT	2 cut(s)	32, 169
AluI	AGCT	2 cut(s)	32, 169
AoxI	GGCC	1 cut(s)	274
ApeKI	GCWGC	1 cut(s)	336
ApoI	RAATTY	3 cut(s)	367, 404, 449
Asp718I	GGTACC	1 cut(s)	384
AspS9I	GGNCC	1 cut(s)	467
AsuHPI	GGTGA	1 cut(s)	239
AvaII	GGWCC	1 cut(s)	467
BanI	GGYRCC	1 cut(s)	384
BbvI	GCAGC	1 cut(s)	323
BccI	CCATC	1 cut(s)	432
BciT130I	CCWGG	2 cut(s)	177, 434
BfmI	CTRYAG	2 cut(s)	27, 456
BisI	GCNGC	1 cut(s)	337
BlsI	GCNGC	1 cut(s)	338
Bme1390I	CCNGG	2 cut(s)	177, 434
Bme18I	GGWCC	1 cut(s)	467
BmgT120I	GGNCC	1 cut(s)	467
BmiI	GGNNCC	1 cut(s)	386
BmrFI	CCNGG	2 cut(s)	177, 434
BmsI	GCATC	2 cut(s)	298, 410
BpmI	CTGGAG	1 cut(s)	198
Bsa29I	ATCGAT	1 cut(s)	418
BsaJI	CCNNGG	4 cut(s)	193, 432, 433, 463
BsaXI	ACNNNNNCTCC	2 cut(s)	429, 459
Bsc4I	CCNNNNNNNGG	1 cut(s)	291
Bse1I	ACTGG	1 cut(s)	99
BseBI	CCWGG	2 cut(s)	177, 434
BseCI	ATCGAT	1 cut(s)	418
BseDI	CCNNGG	4 cut(s)	193, 432, 433, 463
BseGI	GGATG	1 cut(s)	301
BseLI	CCNNNNNNNGG	1 cut(s)	291
BseNI	ACTGG	1 cut(s)	99
BseXI	GCAGC	1 cut(s)	323
BshFI	GGCC	1 cut(s)	276
BshNI	GGYRCC	1 cut(s)	384
BshVI	ATCGAT	1 cut(s)	418
BslI	CCNNNNNNNGG	1 cut(s)	291
BsmI	GAATGC	1 cut(s)	245
BsnI	GGCC	1 cut(s)	276
Bsp143I	GATC	1 cut(s)	415
BspANI	GGCC	1 cut(s)	276
BspDI	ATCGAT	1 cut(s)	418
BspLI	GGNNCC	1 cut(s)	386
BspMAI	CTGCAG	1 cut(s)	460
BspT107I	GGYRCC	1 cut(s)	384
BsrI	ACTGG	1 cut(s)	99
BssECI	CCNNGG	4 cut(s)	193, 432, 433, 463
BssMI	GATC	1 cut(s)	415
BssT1I	CCWWGG	1 cut(s)	463
Bst2UI	CCWGG	2 cut(s)	177, 434
Bst4CI	ACNGT	1 cut(s)	194
BstAPI	GCANNNNNTGC	1 cut(s)	240
BstC8I	GCNNGC	1 cut(s)	274
BstDEI	CTNAG	1 cut(s)	170
BstDSI	CCRYGG	1 cut(s)	193
BstF5I	GGATG	1 cut(s)	301
BstKTI	GATC	1 cut(s)	418
BstMBI	GATC	1 cut(s)	415
BstMWI	GCNNNNNNNGC	1 cut(s)	240
BstNI	CCWGG	2 cut(s)	177, 434
BstSCI	CCNGG	2 cut(s)	175, 432
BstSFI	CTRYAG	2 cut(s)	27, 456
BstV1I	GCAGC	1 cut(s)	323
Bsu15I	ATCGAT	1 cut(s)	418
BsuRI	GGCC	1 cut(s)	276
BsuTUI	ATCGAT	1 cut(s)	418
BtgI	CCRYGG	1 cut(s)	193
BtsCI	GGATG	1 cut(s)	301
Cac8I	GCNNGC	1 cut(s)	274
Cfr13I	GGNCC	1 cut(s)	467
ClaI	ATCGAT	1 cut(s)	418
Csp6I	GTAC	1 cut(s)	385
CviAII	CATG	3 cut(s)	61, 212, 244
CviJI	RGCY	5 cut(s)	32, 169, 272, 276, 336
CviKI_1	RGCY	5 cut(s)	32, 169, 272, 276, 336
CviQI	GTAC	1 cut(s)	385
DdeI	CTNAG	1 cut(s)	170
DpnI	GATC	1 cut(s)	417
DpnII	GATC	1 cut(s)	415
DrdI	GACNNNNNNGTC	1 cut(s)	263
DseDI	GACNNNNNNGTC	1 cut(s)	263
Eco130I	CCWWGG	1 cut(s)	463
Eco47I	GGWCC	1 cut(s)	467
EcoO109I	RGGNCCY	1 cut(s)	467
EcoRII	CCWGG	2 cut(s)	175, 432
EcoT14I	CCWWGG	1 cut(s)	463
EcoT22I	ATGCAT	1 cut(s)	245
ErhI	CCWWGG	1 cut(s)	463
FaeI	CATG	3 cut(s)	64, 215, 247
FatI	CATG	3 cut(s)	60, 211, 243
Fnu4HI	GCNGC	1 cut(s)	337
FokI	GGATG	1 cut(s)	308
Fsp4HI	GCNGC	1 cut(s)	337
GluI	GCNGC	1 cut(s)	337
GsuI	CTGGAG	1 cut(s)	198
HaeIII	GGCC	1 cut(s)	276
Hin1II	CATG	3 cut(s)	64, 215, 247
HincII	GTYRAC	1 cut(s)	78
HindII	GTYRAC	1 cut(s)	78
HindIII	AAGCTT	1 cut(s)	167
HinfI	GANTC	3 cut(s)	67, 440, 501
HphI	GGTGA	1 cut(s)	239
Hpy166II	GTNNAC	2 cut(s)	56, 78
Hpy188I	TCNGA	1 cut(s)	256
Hpy188III	TCNNGA	2 cut(s)	293, 349
Hpy8I	GTNNAC	2 cut(s)	56, 78
HpyAV	CCTTC	2 cut(s)	79, 480
HpyCH4III	ACNGT	1 cut(s)	194
HpyCH4V	TGCA	3 cut(s)	234, 243, 458
HpyF10VI	GCNNNNNNNGC	1 cut(s)	240
HpyF3I	CTNAG	1 cut(s)	170
Hsp92II	CATG	3 cut(s)	64, 215, 247
KpnI	GGTACC	1 cut(s)	388
Kzo9I	GATC	1 cut(s)	415
LmnI	GCTCC	2 cut(s)	88, 197
Lsp1109I	GCAGC	1 cut(s)	323
LweI	GCATC	2 cut(s)	298, 410
MaeIII	GTNAC	4 cut(s)	22, 227, 376, 484
MalI	GATC	1 cut(s)	417
MboI	GATC	1 cut(s)	415
MboII	GAAGA	1 cut(s)	419
MluCI	AATT	5 cut(s)	104, 367, 404, 449, 516
MmeI	TCCRAC	1 cut(s)	81
MnlI	CCTC	4 cut(s)	287, 398, 403, 490
Mph1103I	ATGCAT	1 cut(s)	245
MseI	TTAA	1 cut(s)	365
MslI	CAYNNNNRTG	2 cut(s)	216, 294
MspR9I	CCNGG	2 cut(s)	177, 434
Mva1269I	GAATGC	1 cut(s)	245
MvaI	CCWGG	2 cut(s)	177, 434
MwoI	GCNNNNNNNGC	1 cut(s)	240
NdeII	GATC	1 cut(s)	415
NlaIII	CATG	3 cut(s)	64, 215, 247
NlaIV	GGNNCC	1 cut(s)	386
NmuCI	GTSAC	3 cut(s)	227, 376, 484
NsiI	ATGCAT	1 cut(s)	245
PasI	CCCWGGG	1 cut(s)	433
PctI	GAATGC	1 cut(s)	245
PfeI	GAWTC	3 cut(s)	67, 440, 501
PfoI	TCCNGGA	1 cut(s)	175
PkrI	GCNGC	1 cut(s)	338
PpuMI	RGGWCCY	1 cut(s)	467
Psp5II	RGGWCCY	1 cut(s)	467
Psp6I	CCWGG	2 cut(s)	175, 432
PspGI	CCWGG	2 cut(s)	175, 432
PspN4I	GGNNCC	1 cut(s)	386
PspPI	GGNCC	1 cut(s)	467
PspPPI	RGGWCCY	1 cut(s)	467
PstI	CTGCAG	1 cut(s)	460
RsaI	GTAC	1 cut(s)	386
RsaNI	GTAC	1 cut(s)	385
RseI	CAYNNNNRTG	2 cut(s)	216, 294
SaqAI	TTAA	1 cut(s)	365
SatI	GCNGC	1 cut(s)	337
Sau3AI	GATC	1 cut(s)	415
Sau96I	GGNCC	1 cut(s)	467
ScrFI	CCNGG	2 cut(s)	177, 434
SetI	ASST	7 cut(s)	34, 171, 386, 390, 397, 414, 469
SfaNI	GCATC	2 cut(s)	298, 410
SfcI	CTRYAG	2 cut(s)	27, 456
SinI	GGWCC	1 cut(s)	467
SmiMI	CAYNNNNRTG	2 cut(s)	216, 294
Sse9I	AATT	5 cut(s)	104, 367, 404, 449, 516
StyD4I	CCNGG	2 cut(s)	175, 432
StyI	CCWWGG	1 cut(s)	463
TaaI	ACNGT	1 cut(s)	194
TaqI	TCGA	1 cut(s)	418
TasI	AATT	5 cut(s)	104, 367, 404, 449, 516
TfiI	GAWTC	3 cut(s)	67, 440, 501
Tru1I	TTAA	1 cut(s)	365
Tru9I	TTAA	1 cut(s)	365
TseFI	GTSAC	3 cut(s)	227, 376, 484
TseI	GCWGC	1 cut(s)	336
Tsp45I	GTSAC	3 cut(s)	227, 376, 484
TspDTI	ATGAA	1 cut(s)	219
VpaK11BI	GGWCC	1 cut(s)	467
XapI	RAATTY	3 cut(s)	367, 404, 449
Zsp2I	ATGCAT	1 cut(s)	245

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.