Rh7BG231500

Belongs to the mannose-6-phosphate isomerase type 1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0018644
Physical Location & Seq
Reverse (-)
20255222 .. 20255973
752 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG231500.1

Sequence Viewer

Length: 663 bp
ATGTCAGCAACCAAAGACATTGTAACTACAGCAACAACTGAACTGAAAACTCGTTTACACATGGAGAATCAGGTGAGGCAGTTGACAGAGAAGGAGCAACTGGTGTTGGAATTGGAAAGGCAATATCCTGATGATGTGGGTGTCTTATCTGCTTTCTTTCTCAACTATGTCAAGCTTAGTCCTGGAGAAGCACTATACCTCGGAGCAATTAATGAACCCCATGCCTATATGTTCGGTGACTGCACCGAGTGCATGGCAACTTCTGACAATGTAGTCAGGGCCGGCCTCACTCCCAAGCATCGGGATGTGAAAACCCTTTGTTCTATGCTCACATACAAGCAGGGCTGCCCTGAAATCCTGAAAGGAGTTGCCTTCAATTCTTATGTGACCAGGTACCTCCCACCTTTTGACGAATTTGAGGTTGATCGATGCCATCTTCCCCAGGGAGAATCGGTGGAATTTGCTGCAGTCCAAGGTCCTTCCATTTTTGTCGTCACTTTTGGGGAGGGAATCATATATACAAGCAATTTTACAGGAGATATAAATATCACACAAGGAAAGGTTCTTTTCGTGCCTGCAGATACTGAGATTAGCATAACAAGTGCATCTGAGTTGCACATATATAGAGCCGGAGTGAACAGCATGTTCTTTCAAGTCCCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000032 GO:0001101 GO:0003006 GO:0003674 GO:0003824 GO:0004476 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0005996 GO:0006056 GO:0006057 GO:0006082 GO:0006139 GO:0006464 GO:0006486 GO:0006725 GO:0006732 GO:0006766 GO:0006767 GO:0006807 GO:0007275 GO:0007584 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009108 GO:0009110 GO:0009225 GO:0009226 GO:0009298 GO:0009314 GO:0009416 GO:0009605 GO:0009628 GO:0009636 GO:0009642 GO:0009646 GO:0009743 GO:0009744 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0009991 GO:0010033 GO:0010035 GO:0010038 GO:0010043 GO:0010154 GO:0014070 GO:0016043 GO:0016051 GO:0016053 GO:0016853 GO:0016860 GO:0016861 GO:0017085 GO:0018130 GO:0019438 GO:0019538 GO:0019673 GO:0019752 GO:0019852 GO:0019853 GO:0022414 GO:0031505 GO:0031506 GO:0031667 GO:0032025 GO:0032501 GO:0032502 GO:0033273 GO:0033591 GO:0034284 GO:0034285 GO:0034641 GO:0034645 GO:0034654 GO:0036211 GO:0042221 GO:0042364 GO:0042493 GO:0042546 GO:0043170 GO:0043412 GO:0043413 GO:0043436 GO:0044036 GO:0044038 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0045229 GO:0046364 GO:0046394 GO:0046483 GO:0046680 GO:0046686 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0051186 GO:0051188 GO:0055086 GO:0061458 GO:0070085 GO:0070589 GO:0071554 GO:0071555 GO:0071704 GO:0071840 GO:0071852 GO:1901135 GO:1901137 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901700
KEGG Pathways
Metabolic & Signaling
ko00051 ko00520 ko01100 ko01110 ko01130 map00051 map00520 map01100 map01110 map01130
Pfam Domains
Protein Families
PMI_typeI

Protein Analysis

220

Amino Acids

24.5

Weight (kDa)

4.93

Isoelectric Point (pI)

37.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMI_typeI_hel PF20512 1 - 54 3.7e-06 Phosphomannose isomerase type I, helical insertion domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 272
Acc65I GGTACC 1 cut(s) 393
AccB1I GGYRCC 1 cut(s) 393
AcsI RAATTY 2 cut(s) 413, 458
AdeI CACNNNGTG 1 cut(s) 249
AfaI GTAC 1 cut(s) 395
AfiI CCNNNNNNNGG 1 cut(s) 300
AgsI TTSAA 2 cut(s) 376, 653
AjnI CCWGG 3 cut(s) 181, 389, 441
AluBI AGCT 1 cut(s) 175
AluI AGCT 1 cut(s) 175
AlwNI CAGNNNCTG 1 cut(s) 584
AoxI GGCC 2 cut(s) 279, 283
ApeKI GCWGC 2 cut(s) 345, 464
ApoI RAATTY 2 cut(s) 413, 458
AseI ATTAAT 1 cut(s) 210
Asp718I GGTACC 1 cut(s) 393
AspS9I GGNCC 2 cut(s) 279, 476
AsuHPI GGTGA 2 cut(s) 85, 248
AvaII GGWCC 1 cut(s) 476
BanI GGYRCC 1 cut(s) 393
BbvI GCAGC 2 cut(s) 332, 451
BccI CCATC 1 cut(s) 441
BciT130I CCWGG 3 cut(s) 183, 391, 443
BfmI CTRYAG 3 cut(s) 27, 465, 576
BisI GCNGC 2 cut(s) 346, 465
BlsI GCNGC 2 cut(s) 347, 466
Bme1390I CCNGG 3 cut(s) 183, 391, 443
Bme18I GGWCC 1 cut(s) 476
BmgT120I GGNCC 2 cut(s) 279, 476
BmiI GGNNCC 1 cut(s) 395
BmrFI CCNGG 3 cut(s) 183, 391, 443
BmsI GCATC 3 cut(s) 307, 419, 614
BpmI CTGGAG 1 cut(s) 204
Bsa29I ATCGAT 1 cut(s) 427
BsaJI CCNNGG 4 cut(s) 199, 441, 442, 472
BsaXI ACNNNNNCTCC 2 cut(s) 438, 468
Bsc4I CCNNNNNNNGG 1 cut(s) 300
Bse118I RCCGGY 1 cut(s) 281
Bse1I ACTGG 1 cut(s) 105
BseBI CCWGG 3 cut(s) 183, 391, 443
BseCI ATCGAT 1 cut(s) 427
BseDI CCNNGG 4 cut(s) 199, 441, 442, 472
BseGI GGATG 1 cut(s) 310
BseLI CCNNNNNNNGG 1 cut(s) 300
BseMII CTCAG 2 cut(s) 576, 600
BseNI ACTGG 1 cut(s) 105
BseXI GCAGC 2 cut(s) 332, 451
BsgI GTGCAG 1 cut(s) 226
BshFI GGCC 2 cut(s) 281, 285
BshNI GGYRCC 1 cut(s) 393
BshVI ATCGAT 1 cut(s) 427
BsiSI CCGG 2 cut(s) 282, 630
BslFI GGGAC 1 cut(s) 641
BslI CCNNNNNNNGG 1 cut(s) 300
BsmFI GGGAC 1 cut(s) 641
BsnI GGCC 2 cut(s) 281, 285
Bsp143I GATC 1 cut(s) 424
BspANI GGCC 2 cut(s) 281, 285
BspCNI CTCAG 2 cut(s) 577, 601
BspDI ATCGAT 1 cut(s) 427
BspLI GGNNCC 1 cut(s) 395
BspMAI CTGCAG 2 cut(s) 469, 580
BspT107I GGYRCC 1 cut(s) 393
BsrFI RCCGGY 1 cut(s) 281
BsrI ACTGG 1 cut(s) 105
BssAI RCCGGY 1 cut(s) 281
BssECI CCNNGG 4 cut(s) 199, 441, 442, 472
BssMI GATC 1 cut(s) 424
BssT1I CCWWGG 1 cut(s) 472
Bst2UI CCWGG 3 cut(s) 183, 391, 443
BstAPI GCANNNNNTGC 1 cut(s) 249
BstC8I GCNNGC 2 cut(s) 283, 576
BstDEI CTNAG 3 cut(s) 176, 585, 609
BstF5I GGATG 1 cut(s) 310
BstKTI GATC 1 cut(s) 427
BstMBI GATC 1 cut(s) 424
BstMWI GCNNNNNNNGC 1 cut(s) 249
BstNI CCWGG 3 cut(s) 183, 391, 443
BstNSI RCATGY 1 cut(s) 646
BstSCI CCNGG 3 cut(s) 181, 389, 441
BstSFI CTRYAG 3 cut(s) 27, 465, 576
BstV1I GCAGC 2 cut(s) 332, 451
Bsu15I ATCGAT 1 cut(s) 427
BsuRI GGCC 2 cut(s) 281, 285
BsuTUI ATCGAT 1 cut(s) 427
BtsCI GGATG 1 cut(s) 310
Cac8I GCNNGC 2 cut(s) 283, 576
CaiI CAGNNNCTG 1 cut(s) 584
Cfr10I RCCGGY 1 cut(s) 281
Cfr13I GGNCC 2 cut(s) 279, 476
ClaI ATCGAT 1 cut(s) 427
CsiI ACCWGGT 1 cut(s) 389
Csp6I GTAC 1 cut(s) 394
CviAII CATG 4 cut(s) 61, 221, 253, 643
CviJI RGCY 5 cut(s) 175, 281, 285, 345, 629
CviKI_1 RGCY 5 cut(s) 175, 281, 285, 345, 629
CviQI GTAC 1 cut(s) 394
DdeI CTNAG 3 cut(s) 176, 585, 609
DpnI GATC 1 cut(s) 426
DpnII GATC 1 cut(s) 424
DraIII CACNNNGTG 1 cut(s) 249
DrdI GACNNNNNNGTC 1 cut(s) 272
DseDI GACNNNNNNGTC 1 cut(s) 272
Eco130I CCWWGG 1 cut(s) 472
Eco47I GGWCC 1 cut(s) 476
EcoO109I RGGNCCY 1 cut(s) 476
EcoRII CCWGG 3 cut(s) 181, 389, 441
EcoT14I CCWWGG 1 cut(s) 472
ErhI CCWWGG 1 cut(s) 472
FaeI CATG 4 cut(s) 64, 224, 256, 646
FaqI GGGAC 1 cut(s) 641
FatI CATG 4 cut(s) 60, 220, 252, 642
Fnu4HI GCNGC 2 cut(s) 346, 465
FokI GGATG 1 cut(s) 317
FseI GGCCGGCC 1 cut(s) 285
Fsp4HI GCNGC 2 cut(s) 346, 465
GluI GCNGC 2 cut(s) 346, 465
GsuI CTGGAG 1 cut(s) 204
HaeIII GGCC 2 cut(s) 281, 285
HapII CCGG 2 cut(s) 282, 630
Hin1II CATG 4 cut(s) 64, 224, 256, 646
HincII GTYRAC 1 cut(s) 84
HindII GTYRAC 1 cut(s) 84
HindIII AAGCTT 1 cut(s) 173
HinfI GANTC 3 cut(s) 67, 449, 510
HpaII CCGG 2 cut(s) 282, 630
HphI GGTGA 2 cut(s) 85, 248
Hpy166II GTNNAC 3 cut(s) 56, 84, 637
Hpy188I TCNGA 3 cut(s) 203, 265, 610
Hpy188III TCNNGA 3 cut(s) 128, 302, 358
Hpy8I GTNNAC 3 cut(s) 56, 84, 637
HpyAV CCTTC 3 cut(s) 85, 382, 489
HpyCH4V TGCA 6 cut(s) 243, 252, 467, 578, 605, 616
HpyF10VI GCNNNNNNNGC 1 cut(s) 249
HpyF3I CTNAG 3 cut(s) 176, 585, 609
Hsp92II CATG 4 cut(s) 64, 224, 256, 646
KpnI GGTACC 1 cut(s) 397
KroI GCCGGC 1 cut(s) 281
KroNI GCCGGC 1 cut(s) 283
Kzo9I GATC 1 cut(s) 424
LmnI GCTCC 2 cut(s) 94, 203
Lsp1109I GCAGC 2 cut(s) 332, 451
LweI GCATC 3 cut(s) 307, 419, 614
MabI ACCWGGT 1 cut(s) 389
MaeIII GTNAC 4 cut(s) 22, 236, 385, 493
MalI GATC 1 cut(s) 426
MboI GATC 1 cut(s) 424
MboII GAAGA 1 cut(s) 428
MluCI AATT 6 cut(s) 110, 207, 376, 413, 458, 526
MmeI TCCRAC 1 cut(s) 87
MnlI CCTC 6 cut(s) 69, 209, 296, 407, 412, 499
MroNI GCCGGC 1 cut(s) 281
MseI TTAA 1 cut(s) 210
MslI CAYNNNNRTG 1 cut(s) 303
MspI CCGG 2 cut(s) 282, 630
MspR9I CCNGG 3 cut(s) 183, 391, 443
MvaI CCWGG 3 cut(s) 183, 391, 443
MwoI GCNNNNNNNGC 1 cut(s) 249
NaeI GCCGGC 1 cut(s) 283
NdeII GATC 1 cut(s) 424
NgoMIV GCCGGC 1 cut(s) 281
NlaIII CATG 4 cut(s) 64, 224, 256, 646
NlaIV GGNNCC 1 cut(s) 395
NmuCI GTSAC 3 cut(s) 236, 385, 493
NspI RCATGY 1 cut(s) 646
PasI CCCWGGG 1 cut(s) 442
PdiI GCCGGC 1 cut(s) 283
PfeI GAWTC 3 cut(s) 67, 449, 510
PfoI TCCNGGA 1 cut(s) 181
PkrI GCNGC 2 cut(s) 347, 466
PpuMI RGGWCCY 1 cut(s) 476
PshBI ATTAAT 1 cut(s) 210
Psp5II RGGWCCY 1 cut(s) 476
Psp6I CCWGG 3 cut(s) 181, 389, 441
PspGI CCWGG 3 cut(s) 181, 389, 441
PspN4I GGNNCC 1 cut(s) 395
PspPI GGNCC 2 cut(s) 279, 476
PspPPI RGGWCCY 1 cut(s) 476
PstI CTGCAG 2 cut(s) 469, 580
PstNI CAGNNNCTG 1 cut(s) 584
RigI GGCCGGCC 1 cut(s) 285
RsaI GTAC 1 cut(s) 395
RsaNI GTAC 1 cut(s) 394
RseI CAYNNNNRTG 1 cut(s) 303
SaqAI TTAA 1 cut(s) 210
SatI GCNGC 2 cut(s) 346, 465
Sau3AI GATC 1 cut(s) 424
Sau96I GGNCC 2 cut(s) 279, 476
ScrFI CCNGG 3 cut(s) 183, 391, 443
SetI ASST 9 cut(s) 75, 177, 201, 395, 399, 406, 423, 478, 564
SexAI ACCWGGT 1 cut(s) 389
SfaNI GCATC 3 cut(s) 307, 419, 614
SfcI CTRYAG 3 cut(s) 27, 465, 576
SinI GGWCC 1 cut(s) 476
SmiMI CAYNNNNRTG 1 cut(s) 303
Sse9I AATT 6 cut(s) 110, 207, 376, 413, 458, 526
StyD4I CCNGG 3 cut(s) 181, 389, 441
StyI CCWWGG 1 cut(s) 472
TaqI TCGA 1 cut(s) 427
TasI AATT 6 cut(s) 110, 207, 376, 413, 458, 526
TfiI GAWTC 3 cut(s) 67, 449, 510
Tru1I TTAA 1 cut(s) 210
Tru9I TTAA 1 cut(s) 210
TseFI GTSAC 3 cut(s) 236, 385, 493
TseI GCWGC 2 cut(s) 345, 464
Tsp45I GTSAC 3 cut(s) 236, 385, 493
TspDTI ATGAA 1 cut(s) 228
VpaK11BI GGWCC 1 cut(s) 476
VspI ATTAAT 1 cut(s) 210
XapI RAATTY 2 cut(s) 413, 458
XceI RCATGY 1 cut(s) 646
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.