RLG00000003247

Belongs to the mannose-6-phosphate isomerase type 1 family

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
Physical Location & Seq
Forward (+)
46037386 .. 46037919
534 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000003247

Sequence Viewer

Length: 429 bp
ATGACATGGGTGTTATATATATCTGCTTCCTTTCTCAACTATGTCAAGCTTAGTCCTGGAGAAGCAATCTACCTCAGAGCAAATGAACCCCATGCCTATATGTTTGGTGGCTGCATCGAATGCATGGCAACTTCTGACAATGTAACCAGGGCCGGCCTCACTCCCAAGTATCGGGATGTGAAAACCCTTTGTTCTATGCTCACATATAAGCAGGGCTGCCGTGAAATCCTGAAAGGAGTTTCCTTGAATTCTTATGTGACAAGGTACCTCTCACCTTTTGACGAATTTGAGGTTGATCGATGCCATCTTCCCCAGGGAGAATCGGTGGAATTTCCTACAGTCCAAGATACTGAGATTAGCATAACAAGTGCATCTGAGTTGTACATCTATAGAGCCGGAGTGAACAGCATGTTCTTTCAAGTCCCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000032 GO:0001101 GO:0003006 GO:0003674 GO:0003824 GO:0004476 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0005996 GO:0006056 GO:0006057 GO:0006082 GO:0006139 GO:0006464 GO:0006486 GO:0006725 GO:0006732 GO:0006766 GO:0006767 GO:0006807 GO:0007275 GO:0007584 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009108 GO:0009110 GO:0009225 GO:0009226 GO:0009298 GO:0009314 GO:0009416 GO:0009605 GO:0009628 GO:0009636 GO:0009642 GO:0009646 GO:0009743 GO:0009744 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0009991 GO:0010033 GO:0010035 GO:0010038 GO:0010043 GO:0010154 GO:0014070 GO:0016043 GO:0016051 GO:0016053 GO:0016853 GO:0016860 GO:0016861 GO:0017085 GO:0018130 GO:0019438 GO:0019538 GO:0019673 GO:0019752 GO:0019852 GO:0019853 GO:0022414 GO:0031505 GO:0031506 GO:0031667 GO:0032025 GO:0032501 GO:0032502 GO:0033273 GO:0033591 GO:0034284 GO:0034285 GO:0034641 GO:0034645 GO:0034654 GO:0036211 GO:0042221 GO:0042364 GO:0042493 GO:0042546 GO:0043170 GO:0043412 GO:0043413 GO:0043436 GO:0044036 GO:0044038 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0045229 GO:0046364 GO:0046394 GO:0046483 GO:0046680 GO:0046686 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0051186 GO:0051188 GO:0055086 GO:0061458 GO:0070085 GO:0070589 GO:0071554 GO:0071555 GO:0071704 GO:0071840 GO:0071852 GO:1901135 GO:1901137 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901700
Pfam Domains
Protein Families

Protein Analysis

143

Amino Acids

16.08

Weight (kDa)

5.34

Isoelectric Point (pI)

40.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 264
AccB1I GGYRCC 1 cut(s) 264
AcsI RAATTY 3 cut(s) 247, 284, 329
AfaI GTAC 2 cut(s) 266, 383
AfiI CCNNNNNNNGG 1 cut(s) 171
AgsI TTSAA 2 cut(s) 247, 419
AjnI CCWGG 3 cut(s) 55, 146, 312
AluBI AGCT 1 cut(s) 49
AluI AGCT 1 cut(s) 49
AoxI GGCC 2 cut(s) 150, 154
ApeKI GCWGC 2 cut(s) 111, 216
ApoI RAATTY 3 cut(s) 247, 284, 329
Asp718I GGTACC 1 cut(s) 264
AspS9I GGNCC 1 cut(s) 150
AsuHPI GGTGA 1 cut(s) 264
BanI GGYRCC 1 cut(s) 264
BbvI GCAGC 2 cut(s) 98, 203
BccI CCATC 1 cut(s) 312
BceAI ACGGC 1 cut(s) 204
BciT130I CCWGG 3 cut(s) 57, 148, 314
BfmI CTRYAG 2 cut(s) 336, 388
BisI GCNGC 2 cut(s) 112, 217
BlsI GCNGC 2 cut(s) 113, 218
Bme1390I CCNGG 3 cut(s) 57, 148, 314
BmgT120I GGNCC 1 cut(s) 150
BmiI GGNNCC 1 cut(s) 266
BmrFI CCNGG 3 cut(s) 57, 148, 314
BmsI GCATC 3 cut(s) 123, 290, 380
BpmI CTGGAG 1 cut(s) 78
Bsa29I ATCGAT 1 cut(s) 298
BsaJI CCNNGG 3 cut(s) 147, 312, 313
BsaXI ACNNNNNCTCC 2 cut(s) 309, 339
Bsc4I CCNNNNNNNGG 1 cut(s) 171
Bse118I RCCGGY 1 cut(s) 152
BseBI CCWGG 3 cut(s) 57, 148, 314
BseCI ATCGAT 1 cut(s) 298
BseDI CCNNGG 3 cut(s) 147, 312, 313
BseGI GGATG 1 cut(s) 181
BseLI CCNNNNNNNGG 1 cut(s) 171
BseMII CTCAG 3 cut(s) 88, 342, 366
BseXI GCAGC 2 cut(s) 98, 203
BshFI GGCC 2 cut(s) 152, 156
BshNI GGYRCC 1 cut(s) 264
BshVI ATCGAT 1 cut(s) 298
BsiSI CCGG 2 cut(s) 153, 396
BslFI GGGAC 1 cut(s) 407
BslI CCNNNNNNNGG 1 cut(s) 171
BsmFI GGGAC 1 cut(s) 407
BsmI GAATGC 1 cut(s) 125
BsnI GGCC 2 cut(s) 152, 156
Bsp1407I TGTACA 1 cut(s) 381
Bsp143I GATC 1 cut(s) 295
BspANI GGCC 2 cut(s) 152, 156
BspCNI CTCAG 3 cut(s) 87, 343, 367
BspDI ATCGAT 1 cut(s) 298
BspLI GGNNCC 1 cut(s) 266
BspT107I GGYRCC 1 cut(s) 264
BsrFI RCCGGY 1 cut(s) 152
BsrGI TGTACA 1 cut(s) 381
BssAI RCCGGY 1 cut(s) 152
BssECI CCNNGG 3 cut(s) 147, 312, 313
BssMI GATC 1 cut(s) 295
Bst2UI CCWGG 3 cut(s) 57, 148, 314
Bst4CI ACNGT 1 cut(s) 340
BstAPI GCANNNNNTGC 1 cut(s) 120
BstAUI TGTACA 1 cut(s) 381
BstC8I GCNNGC 1 cut(s) 154
BstDEI CTNAG 4 cut(s) 50, 74, 351, 375
BstF5I GGATG 1 cut(s) 181
BstKTI GATC 1 cut(s) 298
BstMBI GATC 1 cut(s) 295
BstMWI GCNNNNNNNGC 1 cut(s) 120
BstNI CCWGG 3 cut(s) 57, 148, 314
BstNSI RCATGY 1 cut(s) 412
BstSCI CCNGG 3 cut(s) 55, 146, 312
BstSFI CTRYAG 2 cut(s) 336, 388
BstV1I GCAGC 2 cut(s) 98, 203
Bsu15I ATCGAT 1 cut(s) 298
BsuRI GGCC 2 cut(s) 152, 156
BsuTUI ATCGAT 1 cut(s) 298
BtsCI GGATG 1 cut(s) 181
Cac8I GCNNGC 1 cut(s) 154
Cfr10I RCCGGY 1 cut(s) 152
Cfr13I GGNCC 1 cut(s) 150
ClaI ATCGAT 1 cut(s) 298
Csp6I GTAC 2 cut(s) 265, 382
CviAII CATG 4 cut(s) 6, 92, 124, 409
CviJI RGCY 6 cut(s) 49, 111, 152, 156, 216, 395
CviKI_1 RGCY 6 cut(s) 49, 111, 152, 156, 216, 395
CviQI GTAC 2 cut(s) 265, 382
DdeI CTNAG 4 cut(s) 50, 74, 351, 375
DpnI GATC 1 cut(s) 297
DpnII GATC 1 cut(s) 295
EcoRI GAATTC 1 cut(s) 247
EcoRII CCWGG 3 cut(s) 55, 146, 312
EcoT22I ATGCAT 1 cut(s) 125
FaeI CATG 4 cut(s) 9, 95, 127, 412
FaqI GGGAC 1 cut(s) 407
FatI CATG 4 cut(s) 5, 91, 123, 408
Fnu4HI GCNGC 2 cut(s) 112, 217
FokI GGATG 1 cut(s) 188
FseI GGCCGGCC 1 cut(s) 156
Fsp4HI GCNGC 2 cut(s) 112, 217
GluI GCNGC 2 cut(s) 112, 217
GsuI CTGGAG 1 cut(s) 78
HaeIII GGCC 2 cut(s) 152, 156
HapII CCGG 2 cut(s) 153, 396
Hin1II CATG 4 cut(s) 9, 95, 127, 412
HindIII AAGCTT 1 cut(s) 47
HinfI GANTC 1 cut(s) 320
HpaII CCGG 2 cut(s) 153, 396
HphI GGTGA 1 cut(s) 264
Hpy166II GTNNAC 1 cut(s) 403
Hpy188I TCNGA 3 cut(s) 77, 136, 376
Hpy188III TCNNGA 2 cut(s) 173, 229
Hpy8I GTNNAC 1 cut(s) 403
HpyCH4III ACNGT 1 cut(s) 340
HpyCH4V TGCA 3 cut(s) 114, 123, 371
HpyF10VI GCNNNNNNNGC 1 cut(s) 120
HpyF3I CTNAG 4 cut(s) 50, 74, 351, 375
Hsp92II CATG 4 cut(s) 9, 95, 127, 412
KpnI GGTACC 1 cut(s) 268
KroI GCCGGC 1 cut(s) 152
KroNI GCCGGC 1 cut(s) 154
Kzo9I GATC 1 cut(s) 295
Lsp1109I GCAGC 2 cut(s) 98, 203
LweI GCATC 3 cut(s) 123, 290, 380
MaeIII GTNAC 2 cut(s) 142, 256
MalI GATC 1 cut(s) 297
MboI GATC 1 cut(s) 295
MboII GAAGA 1 cut(s) 299
MluCI AATT 3 cut(s) 247, 284, 329
MnlI CCTC 4 cut(s) 83, 167, 278, 283
Mph1103I ATGCAT 1 cut(s) 125
MroNI GCCGGC 1 cut(s) 152
MspI CCGG 2 cut(s) 153, 396
MspR9I CCNGG 3 cut(s) 57, 148, 314
Mva1269I GAATGC 1 cut(s) 125
MvaI CCWGG 3 cut(s) 57, 148, 314
MwoI GCNNNNNNNGC 1 cut(s) 120
NaeI GCCGGC 1 cut(s) 154
NdeII GATC 1 cut(s) 295
NgoMIV GCCGGC 1 cut(s) 152
NlaIII CATG 4 cut(s) 9, 95, 127, 412
NlaIV GGNNCC 1 cut(s) 266
NmuCI GTSAC 1 cut(s) 256
NsiI ATGCAT 1 cut(s) 125
NspI RCATGY 1 cut(s) 412
PasI CCCWGGG 1 cut(s) 313
PctI GAATGC 1 cut(s) 125
PdiI GCCGGC 1 cut(s) 154
PfeI GAWTC 1 cut(s) 320
PfoI TCCNGGA 1 cut(s) 55
PkrI GCNGC 2 cut(s) 113, 218
Psp6I CCWGG 3 cut(s) 55, 146, 312
PspGI CCWGG 3 cut(s) 55, 146, 312
PspN4I GGNNCC 1 cut(s) 266
PspPI GGNCC 1 cut(s) 150
RigI GGCCGGCC 1 cut(s) 156
RsaI GTAC 2 cut(s) 266, 383
RsaNI GTAC 2 cut(s) 265, 382
SatI GCNGC 2 cut(s) 112, 217
Sau3AI GATC 1 cut(s) 295
Sau96I GGNCC 1 cut(s) 150
ScrFI CCNGG 3 cut(s) 57, 148, 314
SetI ASST 6 cut(s) 51, 75, 266, 270, 277, 294
SfaNI GCATC 3 cut(s) 123, 290, 380
SfcI CTRYAG 2 cut(s) 336, 388
Sse9I AATT 3 cut(s) 247, 284, 329
StyD4I CCNGG 3 cut(s) 55, 146, 312
TaaI ACNGT 1 cut(s) 340
TaqI TCGA 2 cut(s) 117, 298
TasI AATT 3 cut(s) 247, 284, 329
TatI WGTACW 1 cut(s) 381
TfiI GAWTC 1 cut(s) 320
TseFI GTSAC 1 cut(s) 256
TseI GCWGC 2 cut(s) 111, 216
Tsp45I GTSAC 1 cut(s) 256
TspDTI ATGAA 1 cut(s) 99
XapI RAATTY 3 cut(s) 247, 284, 329
XceI RCATGY 1 cut(s) 412
Zsp2I ATGCAT 1 cut(s) 125
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.