Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000762.1

Orthogroup ID

OG0018644

Physical Location & Seq

Genomic Coordinates Reverse (-)

182060 .. 182847

Gene Structure 788 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000762.1_g000052.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 582 bp

atggtgaagcagttgacagagaaggagcaactggtgttggaattggaaaggcaatatgctgatgatgtgggtgtcttatctgatttctttctcaactatgtcaagcttagtcctggagaagcactataccttggagcaaatgaaccccatgcctatgtgttcggtgactgcattgagtgcatggcaacttctgacaatgtaatcagggccggcctcactcccaagcatcgggatgtgaaaaccctttgttctatgctcacatacaagcaaggctgcactgaaatcctgaaaggagttgccttaaattcttatgtgagaaggtacctcccaccttttgacgaatttgaggttgatcgatgccatcttccccagggagaatcggtagaatttcctgtagtccaaggtccttccatttttgtcgtcacttttggggagggaatcatatatacaagcaattttacaggagatataaatatcacacaaggagaggttcttttcgtgcctgcagatactgagattagcataacaagtgcatctgagttgcacatatatagagccggagtgaacaacatattcttttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000032 GO:0001101 GO:0003006 GO:0003674 GO:0003824 GO:0004476 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0005996 GO:0006056 GO:0006057 GO:0006082 GO:0006139 GO:0006464 GO:0006486 GO:0006725 GO:0006732 GO:0006766 GO:0006767 GO:0006807 GO:0007275 GO:0007584 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009108 GO:0009110 GO:0009225 GO:0009226 GO:0009298 GO:0009314 GO:0009416 GO:0009605 GO:0009628 GO:0009636 GO:0009642 GO:0009646 GO:0009743 GO:0009744 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0009991 GO:0010033 GO:0010035 GO:0010038 GO:0010043 GO:0010154 GO:0014070 GO:0016043 GO:0016051 GO:0016053 GO:0016853 GO:0016860 GO:0016861 GO:0017085 GO:0018130 GO:0019438 GO:0019538 GO:0019673 GO:0019752 GO:0019852 GO:0019853 GO:0022414 GO:0031505 GO:0031506 GO:0031667 GO:0032025 GO:0032501 GO:0032502 GO:0033273 GO:0033591 GO:0034284 GO:0034285 GO:0034641 GO:0034645 GO:0034654 GO:0036211 GO:0042221 GO:0042364 GO:0042493 GO:0042546 GO:0043170 GO:0043412 GO:0043413 GO:0043436 GO:0044036 GO:0044038 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0045229 GO:0046364 GO:0046394 GO:0046483 GO:0046680 GO:0046686 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0051186 GO:0051188 GO:0055086 GO:0061458 GO:0070085 GO:0070589 GO:0071554 GO:0071555 GO:0071704 GO:0071840 GO:0071852 GO:1901135 GO:1901137 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00051 ko00520 ko01100 ko01110 ko01130 map00051 map00520 map01100 map01110 map01130

Pfam Domains

Protein Families

PMI_typeI

Protein Analysis

193

Amino Acids

21.56

Weight (kDa)

4.66

Isoelectric Point (pI)

46.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018644)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000003241 RLG00000003247
rosa_multiflora	Rmu_sc0000706.1_g000010 Rmu_sc0000762.1_g000011 Rmu_sc0000762.1_g000043 Rmu_sc0000762.1_g000052 Rmu_sc0000762.1_g000070 Rmu_ssc0000432.1_g000043
rosa_rugosa	Rorug07G0101900.1
rosa_samantha	Rh7BG231500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	321
AccB1I	GGYRCC	1 cut(s)	321
AcsI	RAATTY	3 cut(s)	304, 341, 386
AfaI	GTAC	1 cut(s)	323
AfiI	CCNNNNNNNGG	1 cut(s)	228
AjnI	CCWGG	2 cut(s)	112, 369
AluBI	AGCT	1 cut(s)	106
AluI	AGCT	1 cut(s)	106
AlwNI	CAGNNNCTG	1 cut(s)	512
AoxI	GGCC	2 cut(s)	207, 211
ApeKI	GCWGC	1 cut(s)	273
ApoI	RAATTY	3 cut(s)	304, 341, 386
Asp718I	GGTACC	1 cut(s)	321
AspS9I	GGNCC	2 cut(s)	207, 404
AsuHPI	GGTGA	2 cut(s)	16, 176
AvaII	GGWCC	1 cut(s)	404
BanI	GGYRCC	1 cut(s)	321
BbvI	GCAGC	1 cut(s)	260
BccI	CCATC	1 cut(s)	369
BciT130I	CCWGG	2 cut(s)	114, 371
BfmI	CTRYAG	2 cut(s)	393, 504
BisI	GCNGC	1 cut(s)	274
BlsI	GCNGC	1 cut(s)	275
Bme1390I	CCNGG	2 cut(s)	114, 371
Bme18I	GGWCC	1 cut(s)	404
BmgT120I	GGNCC	2 cut(s)	207, 404
BmiI	GGNNCC	1 cut(s)	323
BmrFI	CCNGG	2 cut(s)	114, 371
BmsI	GCATC	3 cut(s)	235, 347, 542
BpmI	CTGGAG	1 cut(s)	135
Bsa29I	ATCGAT	1 cut(s)	355
BsaJI	CCNNGG	4 cut(s)	130, 369, 370, 400
BsaXI	ACNNNNNCTCC	2 cut(s)	366, 396
Bsc4I	CCNNNNNNNGG	1 cut(s)	228
Bse118I	RCCGGY	1 cut(s)	209
Bse1I	ACTGG	1 cut(s)	36
BseBI	CCWGG	2 cut(s)	114, 371
BseCI	ATCGAT	1 cut(s)	355
BseDI	CCNNGG	4 cut(s)	130, 369, 370, 400
BseGI	GGATG	1 cut(s)	238
BseLI	CCNNNNNNNGG	1 cut(s)	228
BseMII	CTCAG	2 cut(s)	504, 528
BseNI	ACTGG	1 cut(s)	36
BseXI	GCAGC	1 cut(s)	260
BsgI	GTGCAG	1 cut(s)	259
BshFI	GGCC	2 cut(s)	209, 213
BshNI	GGYRCC	1 cut(s)	321
BshVI	ATCGAT	1 cut(s)	355
BsiSI	CCGG	2 cut(s)	210, 558
BslI	CCNNNNNNNGG	1 cut(s)	228
BsnI	GGCC	2 cut(s)	209, 213
Bsp143I	GATC	1 cut(s)	352
BspANI	GGCC	2 cut(s)	209, 213
BspCNI	CTCAG	2 cut(s)	505, 529
BspDI	ATCGAT	1 cut(s)	355
BspLI	GGNNCC	1 cut(s)	323
BspMAI	CTGCAG	1 cut(s)	508
BspT107I	GGYRCC	1 cut(s)	321
BsrFI	RCCGGY	1 cut(s)	209
BsrI	ACTGG	1 cut(s)	36
BssAI	RCCGGY	1 cut(s)	209
BssECI	CCNNGG	4 cut(s)	130, 369, 370, 400
BssMI	GATC	1 cut(s)	352
BssT1I	CCWWGG	2 cut(s)	130, 400
Bst2UI	CCWGG	2 cut(s)	114, 371
BstAPI	GCANNNNNTGC	1 cut(s)	177
BstC8I	GCNNGC	2 cut(s)	211, 504
BstDEI	CTNAG	3 cut(s)	107, 513, 537
BstF5I	GGATG	1 cut(s)	238
BstKTI	GATC	1 cut(s)	355
BstMBI	GATC	1 cut(s)	352
BstMWI	GCNNNNNNNGC	1 cut(s)	177
BstNI	CCWGG	2 cut(s)	114, 371
BstSCI	CCNGG	2 cut(s)	112, 369
BstSFI	CTRYAG	2 cut(s)	393, 504
BstV1I	GCAGC	1 cut(s)	260
Bsu15I	ATCGAT	1 cut(s)	355
BsuRI	GGCC	2 cut(s)	209, 213
BsuTUI	ATCGAT	1 cut(s)	355
BtsCI	GGATG	1 cut(s)	238
BtsIMutI	CAGTG	1 cut(s)	276
Cac8I	GCNNGC	2 cut(s)	211, 504
CaiI	CAGNNNCTG	1 cut(s)	512
Cfr10I	RCCGGY	1 cut(s)	209
Cfr13I	GGNCC	2 cut(s)	207, 404
ClaI	ATCGAT	1 cut(s)	355
Csp6I	GTAC	1 cut(s)	322
CviAII	CATG	2 cut(s)	149, 181
CviJI	RGCY	5 cut(s)	106, 209, 213, 273, 557
CviKI_1	RGCY	5 cut(s)	106, 209, 213, 273, 557
CviQI	GTAC	1 cut(s)	322
DdeI	CTNAG	3 cut(s)	107, 513, 537
DpnI	GATC	1 cut(s)	354
DpnII	GATC	1 cut(s)	352
Eco130I	CCWWGG	2 cut(s)	130, 400
Eco47I	GGWCC	1 cut(s)	404
EcoO109I	RGGNCCY	1 cut(s)	404
EcoRII	CCWGG	2 cut(s)	112, 369
EcoT14I	CCWWGG	2 cut(s)	130, 400
ErhI	CCWWGG	2 cut(s)	130, 400
FaeI	CATG	2 cut(s)	152, 184
FatI	CATG	2 cut(s)	148, 180
Fnu4HI	GCNGC	1 cut(s)	274
FokI	GGATG	1 cut(s)	245
FseI	GGCCGGCC	1 cut(s)	213
Fsp4HI	GCNGC	1 cut(s)	274
GluI	GCNGC	1 cut(s)	274
GsuI	CTGGAG	1 cut(s)	135
HaeIII	GGCC	2 cut(s)	209, 213
HapII	CCGG	2 cut(s)	210, 558
Hin1II	CATG	2 cut(s)	152, 184
HincII	GTYRAC	1 cut(s)	15
HindII	GTYRAC	1 cut(s)	15
HindIII	AAGCTT	1 cut(s)	104
HinfI	GANTC	2 cut(s)	377, 438
HpaII	CCGG	2 cut(s)	210, 558
HphI	GGTGA	2 cut(s)	16, 176
Hpy166II	GTNNAC	2 cut(s)	15, 565
Hpy188I	TCNGA	3 cut(s)	82, 193, 538
Hpy188III	TCNNGA	2 cut(s)	230, 286
Hpy8I	GTNNAC	2 cut(s)	15, 565
HpyAV	CCTTC	3 cut(s)	16, 312, 417
HpyCH4V	TGCA	6 cut(s)	171, 180, 276, 506, 533, 544
HpyF10VI	GCNNNNNNNGC	1 cut(s)	177
HpyF3I	CTNAG	3 cut(s)	107, 513, 537
Hsp92II	CATG	2 cut(s)	152, 184
KpnI	GGTACC	1 cut(s)	325
KroI	GCCGGC	1 cut(s)	209
KroNI	GCCGGC	1 cut(s)	211
Kzo9I	GATC	1 cut(s)	352
LmnI	GCTCC	2 cut(s)	25, 134
Lsp1109I	GCAGC	1 cut(s)	260
LweI	GCATC	3 cut(s)	235, 347, 542
MaeIII	GTNAC	2 cut(s)	164, 421
MalI	GATC	1 cut(s)	354
MboI	GATC	1 cut(s)	352
MboII	GAAGA	1 cut(s)	356
MluCI	AATT	5 cut(s)	41, 304, 341, 386, 454
MmeI	TCCRAC	1 cut(s)	18
MnlI	CCTC	5 cut(s)	224, 335, 340, 427, 481
MroNI	GCCGGC	1 cut(s)	209
MseI	TTAA	2 cut(s)	302, 580
MslI	CAYNNNNRTG	2 cut(s)	153, 231
MspI	CCGG	2 cut(s)	210, 558
MspR9I	CCNGG	2 cut(s)	114, 371
MvaI	CCWGG	2 cut(s)	114, 371
MwoI	GCNNNNNNNGC	1 cut(s)	177
NaeI	GCCGGC	1 cut(s)	211
NdeII	GATC	1 cut(s)	352
NgoMIV	GCCGGC	1 cut(s)	209
NlaIII	CATG	2 cut(s)	152, 184
NlaIV	GGNNCC	1 cut(s)	323
NmuCI	GTSAC	2 cut(s)	164, 421
PasI	CCCWGGG	1 cut(s)	370
PdiI	GCCGGC	1 cut(s)	211
PfeI	GAWTC	2 cut(s)	377, 438
PfoI	TCCNGGA	1 cut(s)	112
PkrI	GCNGC	1 cut(s)	275
PpuMI	RGGWCCY	1 cut(s)	404
Psp5II	RGGWCCY	1 cut(s)	404
Psp6I	CCWGG	2 cut(s)	112, 369
PspGI	CCWGG	2 cut(s)	112, 369
PspN4I	GGNNCC	1 cut(s)	323
PspPI	GGNCC	2 cut(s)	207, 404
PspPPI	RGGWCCY	1 cut(s)	404
PstI	CTGCAG	1 cut(s)	508
PstNI	CAGNNNCTG	1 cut(s)	512
RigI	GGCCGGCC	1 cut(s)	213
RsaI	GTAC	1 cut(s)	323
RsaNI	GTAC	1 cut(s)	322
RseI	CAYNNNNRTG	2 cut(s)	153, 231
SaqAI	TTAA	2 cut(s)	302, 580
SatI	GCNGC	1 cut(s)	274
Sau3AI	GATC	1 cut(s)	352
Sau96I	GGNCC	2 cut(s)	207, 404
ScrFI	CCNGG	2 cut(s)	114, 371
SetI	ASST	8 cut(s)	108, 132, 323, 327, 334, 351, 406, 492
SfaNI	GCATC	3 cut(s)	235, 347, 542
SfcI	CTRYAG	2 cut(s)	393, 504
SinI	GGWCC	1 cut(s)	404
SmiMI	CAYNNNNRTG	2 cut(s)	153, 231
Sse9I	AATT	5 cut(s)	41, 304, 341, 386, 454
StyD4I	CCNGG	2 cut(s)	112, 369
StyI	CCWWGG	2 cut(s)	130, 400
TaqI	TCGA	1 cut(s)	355
TasI	AATT	5 cut(s)	41, 304, 341, 386, 454
TfiI	GAWTC	2 cut(s)	377, 438
Tru1I	TTAA	2 cut(s)	302, 580
Tru9I	TTAA	2 cut(s)	302, 580
TscAI	CASTG	1 cut(s)	283
TseFI	GTSAC	2 cut(s)	164, 421
TseI	GCWGC	1 cut(s)	273
Tsp45I	GTSAC	2 cut(s)	164, 421
TspDTI	ATGAA	1 cut(s)	156
TspRI	CASTG	1 cut(s)	283
VpaK11BI	GGWCC	1 cut(s)	404
XapI	RAATTY	3 cut(s)	304, 341, 386

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.