Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000762.1

Orthogroup ID

OG0018644

Physical Location & Seq

Genomic Coordinates Reverse (-)

54927 .. 55332

Gene Structure 406 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000762.1_g000011.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 324 bp

atggaaaatcaggtgaggcagttgacagagagggagcaactggtgttggaattggaaaggcaatatcctggtgatgtgggtttcatatctgctttctttctcaactatgtcaagcttagtcctggagaagcactatacctcgaagcaaatgaagcccatgcctatatgttcggtgactgcatcgagtgcatggcaacttctgacaatgtggttagggccggcctcactcccaagcatcgggatgtgaaaaccctttgttctatgctcacatacaaacaaggctgccctgaaatcctgaaaggagttgccttaaattcttactag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000032 GO:0001101 GO:0003006 GO:0003674 GO:0003824 GO:0004476 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0005996 GO:0006056 GO:0006057 GO:0006082 GO:0006139 GO:0006464 GO:0006486 GO:0006725 GO:0006732 GO:0006766 GO:0006767 GO:0006807 GO:0007275 GO:0007584 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009108 GO:0009110 GO:0009225 GO:0009226 GO:0009298 GO:0009314 GO:0009416 GO:0009605 GO:0009628 GO:0009636 GO:0009642 GO:0009646 GO:0009743 GO:0009744 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0009991 GO:0010033 GO:0010035 GO:0010038 GO:0010043 GO:0010154 GO:0014070 GO:0016043 GO:0016051 GO:0016053 GO:0016853 GO:0016860 GO:0016861 GO:0017085 GO:0018130 GO:0019438 GO:0019538 GO:0019673 GO:0019752 GO:0019852 GO:0019853 GO:0022414 GO:0031505 GO:0031506 GO:0031667 GO:0032025 GO:0032501 GO:0032502 GO:0033273 GO:0033591 GO:0034284 GO:0034285 GO:0034641 GO:0034645 GO:0034654 GO:0036211 GO:0042221 GO:0042364 GO:0042493 GO:0042546 GO:0043170 GO:0043412 GO:0043413 GO:0043436 GO:0044036 GO:0044038 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0045229 GO:0046364 GO:0046394 GO:0046483 GO:0046680 GO:0046686 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0051186 GO:0051188 GO:0055086 GO:0061458 GO:0070085 GO:0070589 GO:0071554 GO:0071555 GO:0071704 GO:0071840 GO:0071852 GO:1901135 GO:1901137 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00051 ko00520 ko01100 ko01110 ko01130 map00051 map00520 map01100 map01110 map01130

Pfam Domains

Protein Families

PMI_typeI

Protein Analysis

107

Amino Acids

12.08

Weight (kDa)

5.09

Isoelectric Point (pI)

40.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018644)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000003241 RLG00000003247
rosa_multiflora	Rmu_sc0000706.1_g000010 Rmu_sc0000762.1_g000011 Rmu_sc0000762.1_g000043 Rmu_sc0000762.1_g000052 Rmu_sc0000762.1_g000070 Rmu_ssc0000432.1_g000043
rosa_rugosa	Rorug07G0101900.1
rosa_samantha	Rh7BG231500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	313
AfiI	CCNNNNNNNGG	1 cut(s)	237
AjnI	CCWGG	2 cut(s)	67, 121
AluBI	AGCT	1 cut(s)	115
AluI	AGCT	1 cut(s)	115
AoxI	GGCC	2 cut(s)	216, 220
ApeKI	GCWGC	1 cut(s)	282
ApoI	RAATTY	1 cut(s)	313
AspS9I	GGNCC	1 cut(s)	216
AsuHPI	GGTGA	3 cut(s)	25, 83, 185
BbvI	GCAGC	1 cut(s)	269
BciT130I	CCWGG	2 cut(s)	69, 123
BfaI	CTAG	1 cut(s)	322
BisI	GCNGC	1 cut(s)	283
BlsI	GCNGC	1 cut(s)	284
Bme1390I	CCNGG	2 cut(s)	69, 123
BmgT120I	GGNCC	1 cut(s)	216
BmrFI	CCNGG	2 cut(s)	69, 123
BmsI	GCATC	2 cut(s)	189, 244
BpmI	CTGGAG	1 cut(s)	144
Bsc4I	CCNNNNNNNGG	1 cut(s)	237
Bse118I	RCCGGY	1 cut(s)	218
Bse1I	ACTGG	1 cut(s)	45
BseBI	CCWGG	2 cut(s)	69, 123
BseGI	GGATG	1 cut(s)	247
BseLI	CCNNNNNNNGG	1 cut(s)	237
BseNI	ACTGG	1 cut(s)	45
BseXI	GCAGC	1 cut(s)	269
BshFI	GGCC	2 cut(s)	218, 222
BsiSI	CCGG	1 cut(s)	219
BslI	CCNNNNNNNGG	1 cut(s)	237
BsnI	GGCC	2 cut(s)	218, 222
BspANI	GGCC	2 cut(s)	218, 222
BsrFI	RCCGGY	1 cut(s)	218
BsrI	ACTGG	1 cut(s)	45
BssAI	RCCGGY	1 cut(s)	218
Bst2UI	CCWGG	2 cut(s)	69, 123
BstAPI	GCANNNNNTGC	1 cut(s)	186
BstC8I	GCNNGC	1 cut(s)	220
BstDEI	CTNAG	1 cut(s)	116
BstF5I	GGATG	1 cut(s)	247
BstMWI	GCNNNNNNNGC	2 cut(s)	152, 186
BstNI	CCWGG	2 cut(s)	69, 123
BstSCI	CCNGG	2 cut(s)	67, 121
BstV1I	GCAGC	1 cut(s)	269
BsuRI	GGCC	2 cut(s)	218, 222
BtsCI	GGATG	1 cut(s)	247
Cac8I	GCNNGC	1 cut(s)	220
Cfr10I	RCCGGY	1 cut(s)	218
Cfr13I	GGNCC	1 cut(s)	216
CviAII	CATG	2 cut(s)	158, 190
CviJI	RGCY	5 cut(s)	115, 155, 218, 222, 282
CviKI_1	RGCY	5 cut(s)	115, 155, 218, 222, 282
DdeI	CTNAG	1 cut(s)	116
EcoRII	CCWGG	2 cut(s)	67, 121
FaeI	CATG	2 cut(s)	161, 193
FaiI	YATR	9 cut(s)	86, 108, 136, 159, 165, 167, 191, 263, 271
FatI	CATG	2 cut(s)	157, 189
Fnu4HI	GCNGC	1 cut(s)	283
FokI	GGATG	1 cut(s)	254
FseI	GGCCGGCC	1 cut(s)	222
Fsp4HI	GCNGC	1 cut(s)	283
FspBI	CTAG	1 cut(s)	322
GluI	GCNGC	1 cut(s)	283
GsuI	CTGGAG	1 cut(s)	144
HaeIII	GGCC	2 cut(s)	218, 222
HapII	CCGG	1 cut(s)	219
Hin1II	CATG	2 cut(s)	161, 193
HincII	GTYRAC	1 cut(s)	24
HindII	GTYRAC	1 cut(s)	24
HindIII	AAGCTT	1 cut(s)	113
HpaII	CCGG	1 cut(s)	219
HphI	GGTGA	3 cut(s)	25, 83, 185
Hpy166II	GTNNAC	1 cut(s)	24
Hpy188I	TCNGA	1 cut(s)	202
Hpy188III	TCNNGA	2 cut(s)	239, 295
Hpy8I	GTNNAC	1 cut(s)	24
HpyCH4V	TGCA	2 cut(s)	180, 189
HpyF10VI	GCNNNNNNNGC	2 cut(s)	152, 186
HpyF3I	CTNAG	1 cut(s)	116
Hsp92II	CATG	2 cut(s)	161, 193
KroI	GCCGGC	1 cut(s)	218
KroNI	GCCGGC	1 cut(s)	220
LmnI	GCTCC	1 cut(s)	34
LpnPI	CCDG	8 cut(s)	26, 54, 81, 108, 135, 232, 300, 308
Lsp1109I	GCAGC	1 cut(s)	269
LweI	GCATC	2 cut(s)	189, 244
MaeI	CTAG	1 cut(s)	322
MaeIII	GTNAC	1 cut(s)	173
MluCI	AATT	2 cut(s)	50, 313
MmeI	TCCRAC	1 cut(s)	27
MnlI	CCTC	4 cut(s)	9, 24, 149, 233
MroNI	GCCGGC	1 cut(s)	218
MseI	TTAA	1 cut(s)	311
MslI	CAYNNNNRTG	1 cut(s)	240
MspI	CCGG	1 cut(s)	219
MspR9I	CCNGG	2 cut(s)	69, 123
MvaI	CCWGG	2 cut(s)	69, 123
MwoI	GCNNNNNNNGC	2 cut(s)	152, 186
NaeI	GCCGGC	1 cut(s)	220
NgoMIV	GCCGGC	1 cut(s)	218
NlaIII	CATG	2 cut(s)	161, 193
NmuCI	GTSAC	1 cut(s)	173
PdiI	GCCGGC	1 cut(s)	220
PfoI	TCCNGGA	1 cut(s)	121
PkrI	GCNGC	1 cut(s)	284
Psp6I	CCWGG	2 cut(s)	67, 121
PspGI	CCWGG	2 cut(s)	67, 121
PspPI	GGNCC	1 cut(s)	216
RigI	GGCCGGCC	1 cut(s)	222
RseI	CAYNNNNRTG	1 cut(s)	240
SaqAI	TTAA	1 cut(s)	311
SatI	GCNGC	1 cut(s)	283
Sau96I	GGNCC	1 cut(s)	216
ScrFI	CCNGG	2 cut(s)	69, 123
SetI	ASST	3 cut(s)	15, 117, 141
SfaNI	GCATC	2 cut(s)	189, 244
SmiMI	CAYNNNNRTG	1 cut(s)	240
Sse9I	AATT	2 cut(s)	50, 313
SspMI	CTAG	1 cut(s)	322
StyD4I	CCNGG	2 cut(s)	67, 121
TaqI	TCGA	2 cut(s)	141, 183
TasI	AATT	2 cut(s)	50, 313
Tru1I	TTAA	1 cut(s)	311
Tru9I	TTAA	1 cut(s)	311
TseFI	GTSAC	1 cut(s)	173
TseI	GCWGC	1 cut(s)	282
Tsp45I	GTSAC	1 cut(s)	173
TspDTI	ATGAA	2 cut(s)	73, 165
XapI	RAATTY	1 cut(s)	313
XspI	CTAG	1 cut(s)	322

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.