Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000762.1

Orthogroup ID

OG0018644

Physical Location & Seq

Genomic Coordinates Reverse (-)

141345 .. 142018

Gene Structure 674 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000762.1_g000043.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 591 bp

atggagaatcaggtgaggcagttgacagagaaggagcaactggtgttggaattggaaaggcaatatcctgatgatgtgggtgtcttatctgctttctttctcaactatgtcaagcttagtcttggagaagcactataccttggagcaaatgaaccccatgcctatgtgtacggtgactgcattgagtgcatggcaacttctgacaatgtagtcagggccggcctcactcccaagcatcgggatgtgaaaaccctttgttctatgctcacatacaagcagggctgccctgaaatcctgaaaggagttgccttaaattcttatgtgacaaggtacctcccaccttttgacgaatttgaggttgatcgatgccatcttccccagggagaatcggtagaatttcctgtagtccaaggtccttccatttttgtcgtcacttttggggagggaatcatatatacaagcaattttacaggagatataaatatcacacaaggagaggttcttttcgtgcctgcagatactgagattagcataaccagtgcatctgagttgcacgtatatagagccggagtgaacagcatattcttttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000032 GO:0001101 GO:0003006 GO:0003674 GO:0003824 GO:0004476 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0005996 GO:0006056 GO:0006057 GO:0006082 GO:0006139 GO:0006464 GO:0006486 GO:0006725 GO:0006732 GO:0006766 GO:0006767 GO:0006807 GO:0007275 GO:0007584 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009108 GO:0009110 GO:0009225 GO:0009226 GO:0009298 GO:0009314 GO:0009416 GO:0009605 GO:0009628 GO:0009636 GO:0009642 GO:0009646 GO:0009743 GO:0009744 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0009991 GO:0010033 GO:0010035 GO:0010038 GO:0010043 GO:0010154 GO:0014070 GO:0016043 GO:0016051 GO:0016053 GO:0016853 GO:0016860 GO:0016861 GO:0017085 GO:0018130 GO:0019438 GO:0019538 GO:0019673 GO:0019752 GO:0019852 GO:0019853 GO:0022414 GO:0031505 GO:0031506 GO:0031667 GO:0032025 GO:0032501 GO:0032502 GO:0033273 GO:0033591 GO:0034284 GO:0034285 GO:0034641 GO:0034645 GO:0034654 GO:0036211 GO:0042221 GO:0042364 GO:0042493 GO:0042546 GO:0043170 GO:0043412 GO:0043413 GO:0043436 GO:0044036 GO:0044038 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0045229 GO:0046364 GO:0046394 GO:0046483 GO:0046680 GO:0046686 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0051186 GO:0051188 GO:0055086 GO:0061458 GO:0070085 GO:0070589 GO:0071554 GO:0071555 GO:0071704 GO:0071840 GO:0071852 GO:1901135 GO:1901137 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00051 ko00520 ko01100 ko01110 ko01130 map00051 map00520 map01100 map01110 map01130

Pfam Domains

Protein Families

PMI_typeI

Protein Analysis

196

Amino Acids

21.86

Weight (kDa)

4.6

Isoelectric Point (pI)

32.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018644)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000003241 RLG00000003247
rosa_multiflora	Rmu_sc0000706.1_g000010 Rmu_sc0000762.1_g000011 Rmu_sc0000762.1_g000043 Rmu_sc0000762.1_g000052 Rmu_sc0000762.1_g000070 Rmu_ssc0000432.1_g000043
rosa_rugosa	Rorug07G0101900.1
rosa_samantha	Rh7BG231500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	209
Acc65I	GGTACC	1 cut(s)	330
AccB1I	GGYRCC	1 cut(s)	330
AcsI	RAATTY	3 cut(s)	313, 350, 395
AfaI	GTAC	2 cut(s)	170, 332
AfiI	CCNNNNNNNGG	1 cut(s)	237
AjnI	CCWGG	1 cut(s)	378
AluBI	AGCT	1 cut(s)	115
AluI	AGCT	1 cut(s)	115
AlwNI	CAGNNNCTG	1 cut(s)	521
AoxI	GGCC	2 cut(s)	216, 220
ApeKI	GCWGC	1 cut(s)	282
ApoI	RAATTY	3 cut(s)	313, 350, 395
Asp718I	GGTACC	1 cut(s)	330
AspS9I	GGNCC	2 cut(s)	216, 413
AsuHPI	GGTGA	2 cut(s)	25, 185
AvaII	GGWCC	1 cut(s)	413
BanI	GGYRCC	1 cut(s)	330
BbvI	GCAGC	1 cut(s)	269
BccI	CCATC	1 cut(s)	378
BciT130I	CCWGG	1 cut(s)	380
BfmI	CTRYAG	2 cut(s)	402, 513
BisI	GCNGC	1 cut(s)	283
BlsI	GCNGC	1 cut(s)	284
Bme1390I	CCNGG	1 cut(s)	380
Bme18I	GGWCC	1 cut(s)	413
BmgT120I	GGNCC	2 cut(s)	216, 413
BmiI	GGNNCC	1 cut(s)	332
BmrFI	CCNGG	1 cut(s)	380
BmsI	GCATC	3 cut(s)	244, 356, 551
Bsa29I	ATCGAT	1 cut(s)	364
BsaAI	YACGTR	1 cut(s)	556
BsaJI	CCNNGG	4 cut(s)	139, 378, 379, 409
BsaXI	ACNNNNNCTCC	2 cut(s)	375, 405
Bsc4I	CCNNNNNNNGG	1 cut(s)	237
Bse118I	RCCGGY	1 cut(s)	218
Bse1I	ACTGG	2 cut(s)	45, 537
BseBI	CCWGG	1 cut(s)	380
BseCI	ATCGAT	1 cut(s)	364
BseDI	CCNNGG	4 cut(s)	139, 378, 379, 409
BseGI	GGATG	1 cut(s)	247
BseLI	CCNNNNNNNGG	1 cut(s)	237
BseMII	CTCAG	2 cut(s)	513, 537
BseNI	ACTGG	2 cut(s)	45, 537
BseXI	GCAGC	1 cut(s)	269
BshFI	GGCC	2 cut(s)	218, 222
BshNI	GGYRCC	1 cut(s)	330
BshVI	ATCGAT	1 cut(s)	364
BsiSI	CCGG	2 cut(s)	219, 567
BslI	CCNNNNNNNGG	1 cut(s)	237
BsnI	GGCC	2 cut(s)	218, 222
Bsp143I	GATC	1 cut(s)	361
BspANI	GGCC	2 cut(s)	218, 222
BspCNI	CTCAG	2 cut(s)	514, 538
BspDI	ATCGAT	1 cut(s)	364
BspLI	GGNNCC	1 cut(s)	332
BspMAI	CTGCAG	1 cut(s)	517
BspT107I	GGYRCC	1 cut(s)	330
BsrFI	RCCGGY	1 cut(s)	218
BsrI	ACTGG	2 cut(s)	45, 537
BssAI	RCCGGY	1 cut(s)	218
BssECI	CCNNGG	4 cut(s)	139, 378, 379, 409
BssMI	GATC	1 cut(s)	361
BssT1I	CCWWGG	2 cut(s)	139, 409
Bst2UI	CCWGG	1 cut(s)	380
Bst4CI	ACNGT	1 cut(s)	173
BstAPI	GCANNNNNTGC	1 cut(s)	186
BstBAI	YACGTR	1 cut(s)	556
BstC8I	GCNNGC	2 cut(s)	220, 513
BstDEI	CTNAG	3 cut(s)	116, 522, 546
BstF5I	GGATG	1 cut(s)	247
BstKTI	GATC	1 cut(s)	364
BstMBI	GATC	1 cut(s)	361
BstMWI	GCNNNNNNNGC	1 cut(s)	186
BstNI	CCWGG	1 cut(s)	380
BstSCI	CCNGG	1 cut(s)	378
BstSFI	CTRYAG	2 cut(s)	402, 513
BstV1I	GCAGC	1 cut(s)	269
Bsu15I	ATCGAT	1 cut(s)	364
BsuRI	GGCC	2 cut(s)	218, 222
BsuTUI	ATCGAT	1 cut(s)	364
BtsCI	GGATG	1 cut(s)	247
BtsIMutI	CAGTG	1 cut(s)	544
Cac8I	GCNNGC	2 cut(s)	220, 513
CaiI	CAGNNNCTG	1 cut(s)	521
Cfr10I	RCCGGY	1 cut(s)	218
Cfr13I	GGNCC	2 cut(s)	216, 413
ClaI	ATCGAT	1 cut(s)	364
Csp6I	GTAC	2 cut(s)	169, 331
CviAII	CATG	2 cut(s)	158, 190
CviJI	RGCY	5 cut(s)	115, 218, 222, 282, 566
CviKI_1	RGCY	5 cut(s)	115, 218, 222, 282, 566
CviQI	GTAC	2 cut(s)	169, 331
DdeI	CTNAG	3 cut(s)	116, 522, 546
DpnI	GATC	1 cut(s)	363
DpnII	GATC	1 cut(s)	361
DrdI	GACNNNNNNGTC	1 cut(s)	209
DseDI	GACNNNNNNGTC	1 cut(s)	209
Eco130I	CCWWGG	2 cut(s)	139, 409
Eco47I	GGWCC	1 cut(s)	413
EcoO109I	RGGNCCY	1 cut(s)	413
EcoRII	CCWGG	1 cut(s)	378
EcoT14I	CCWWGG	2 cut(s)	139, 409
ErhI	CCWWGG	2 cut(s)	139, 409
FaeI	CATG	2 cut(s)	161, 193
FatI	CATG	2 cut(s)	157, 189
Fnu4HI	GCNGC	1 cut(s)	283
FokI	GGATG	1 cut(s)	254
FseI	GGCCGGCC	1 cut(s)	222
Fsp4HI	GCNGC	1 cut(s)	283
GluI	GCNGC	1 cut(s)	283
HaeIII	GGCC	2 cut(s)	218, 222
HapII	CCGG	2 cut(s)	219, 567
Hin1II	CATG	2 cut(s)	161, 193
HincII	GTYRAC	1 cut(s)	24
HindII	GTYRAC	1 cut(s)	24
HindIII	AAGCTT	1 cut(s)	113
HinfI	GANTC	3 cut(s)	7, 386, 447
HpaII	CCGG	2 cut(s)	219, 567
HphI	GGTGA	2 cut(s)	25, 185
Hpy166II	GTNNAC	3 cut(s)	24, 169, 574
Hpy188I	TCNGA	2 cut(s)	202, 547
Hpy188III	TCNNGA	3 cut(s)	68, 239, 295
Hpy8I	GTNNAC	3 cut(s)	24, 169, 574
HpyAV	CCTTC	2 cut(s)	25, 426
HpyCH4III	ACNGT	1 cut(s)	173
HpyCH4IV	ACGT	1 cut(s)	555
HpyCH4V	TGCA	5 cut(s)	180, 189, 515, 542, 553
HpyF10VI	GCNNNNNNNGC	1 cut(s)	186
HpyF3I	CTNAG	3 cut(s)	116, 522, 546
HpySE526I	ACGT	1 cut(s)	555
Hsp92II	CATG	2 cut(s)	161, 193
KpnI	GGTACC	1 cut(s)	334
KroI	GCCGGC	1 cut(s)	218
KroNI	GCCGGC	1 cut(s)	220
Kzo9I	GATC	1 cut(s)	361
LmnI	GCTCC	2 cut(s)	34, 143
Lsp1109I	GCAGC	1 cut(s)	269
LweI	GCATC	3 cut(s)	244, 356, 551
MaeII	ACGT	1 cut(s)	555
MaeIII	GTNAC	3 cut(s)	173, 322, 430
MalI	GATC	1 cut(s)	363
MboI	GATC	1 cut(s)	361
MboII	GAAGA	1 cut(s)	365
MluCI	AATT	5 cut(s)	50, 313, 350, 395, 463
MmeI	TCCRAC	1 cut(s)	27
MnlI	CCTC	6 cut(s)	9, 233, 344, 349, 436, 490
MroNI	GCCGGC	1 cut(s)	218
MseI	TTAA	2 cut(s)	311, 589
MslI	CAYNNNNRTG	2 cut(s)	162, 240
MspI	CCGG	2 cut(s)	219, 567
MspR9I	CCNGG	1 cut(s)	380
MvaI	CCWGG	1 cut(s)	380
MwoI	GCNNNNNNNGC	1 cut(s)	186
NaeI	GCCGGC	1 cut(s)	220
NdeII	GATC	1 cut(s)	361
NgoMIV	GCCGGC	1 cut(s)	218
NlaIII	CATG	2 cut(s)	161, 193
NlaIV	GGNNCC	1 cut(s)	332
NmuCI	GTSAC	3 cut(s)	173, 322, 430
PasI	CCCWGGG	1 cut(s)	379
PdiI	GCCGGC	1 cut(s)	220
PfeI	GAWTC	3 cut(s)	7, 386, 447
PkrI	GCNGC	1 cut(s)	284
Ppu21I	YACGTR	1 cut(s)	556
PpuMI	RGGWCCY	1 cut(s)	413
Psp5II	RGGWCCY	1 cut(s)	413
Psp6I	CCWGG	1 cut(s)	378
PspGI	CCWGG	1 cut(s)	378
PspN4I	GGNNCC	1 cut(s)	332
PspPI	GGNCC	2 cut(s)	216, 413
PspPPI	RGGWCCY	1 cut(s)	413
PstI	CTGCAG	1 cut(s)	517
PstNI	CAGNNNCTG	1 cut(s)	521
RigI	GGCCGGCC	1 cut(s)	222
RsaI	GTAC	2 cut(s)	170, 332
RsaNI	GTAC	2 cut(s)	169, 331
RseI	CAYNNNNRTG	2 cut(s)	162, 240
SaqAI	TTAA	2 cut(s)	311, 589
SatI	GCNGC	1 cut(s)	283
Sau3AI	GATC	1 cut(s)	361
Sau96I	GGNCC	2 cut(s)	216, 413
ScrFI	CCNGG	1 cut(s)	380
SfaNI	GCATC	3 cut(s)	244, 356, 551
SfcI	CTRYAG	2 cut(s)	402, 513
SinI	GGWCC	1 cut(s)	413
SmiMI	CAYNNNNRTG	2 cut(s)	162, 240
Sse9I	AATT	5 cut(s)	50, 313, 350, 395, 463
StyD4I	CCNGG	1 cut(s)	378
StyI	CCWWGG	2 cut(s)	139, 409
TaaI	ACNGT	1 cut(s)	173
TaiI	ACGT	1 cut(s)	558
TaqI	TCGA	1 cut(s)	364
TasI	AATT	5 cut(s)	50, 313, 350, 395, 463
TfiI	GAWTC	3 cut(s)	7, 386, 447
Tru1I	TTAA	2 cut(s)	311, 589
Tru9I	TTAA	2 cut(s)	311, 589
TscAI	CASTG	1 cut(s)	544
TseFI	GTSAC	3 cut(s)	173, 322, 430
TseI	GCWGC	1 cut(s)	282
Tsp45I	GTSAC	3 cut(s)	173, 322, 430
TspDTI	ATGAA	1 cut(s)	165
TspRI	CASTG	1 cut(s)	544
VpaK11BI	GGWCC	1 cut(s)	413
XapI	RAATTY	3 cut(s)	313, 350, 395

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.