Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0016855

Physical Location & Seq

Genomic Coordinates Reverse (-)

48370021 .. 48373596

Gene Structure 3576 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000003433

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1077 bp

ATGGCTTTGCAAATCGAAGAACAATACGTCGAGTCACTCTCCTCCATGGGACACAAACTAAGTGTCAAGAACTTCATTTGGTCCAAGGAAGAATGGCCAGCAATAAATCATGATGAGTTCACAGATTCACATGACATTCCTGCTATAAGTCTCCAAGAGATTTCAGATGGGAGAAGAAACCCTAATTATGAGAAGGTCTGCAAGGTCATGGTGAATGCTTGTGAGAAATGGGGGTTCTTCAAGTTAGTGGATCATGGGGTTGCTTTGGAGATCATAGAGAATTTCAAAGGGAGTATGAATGCGCTTTTTGATCTTCCAATGGAGCAGAAGCTGAAGGGTGTGAGATCAGCTAGTTTACCATTGGGTTACTGTGCAACAAATCCTGATTATGGGAAGAATTTGCCTTGGGCAGAGATCTTACAGTTGCTCCAGTCACCACAAATGGTGGCTGGATTTGCAACAAAGGTTTTTGGTGATCAACATCAGCCATTTAGTGATGCAATGATTGGTTACTTGAATGCATTGGATAATCTGGGAATGACTATTTTGGAGATGCTAGCTCATGGATTGGGTTTTCCAGACAACTTCTTCACAAAGAACTTTGAAGCAAAAGAGGCTACAATGATCAGAGTCAACAGATATCCTCCTTGTCCTCTTCCAGAAAAATGTCTTGGGCTGGGAAGCCATTCAGACCCTCATACCTTAACCATATTGTTACAAGATGATGTTGGAGGGCTTCAAGTTCTTATGAATGACAACAAATGGATTGGCATCCGTCCTGTTCAGAATTCTTTCATTATCAACATTGGTGACACCCTTGAGGCTTGGACTAATGGGAGGCTGAAGAGTGTTGTGCATAGAGCAGTTGTCAACAAGAAGAAGAACAGGCTATCGGCAGCTTATTTCATGAGCCCCTCTGATTCTGCCACAATTGAGTGCCCTCCCGAGTTCATGGACCCAATAATCAACCCTAGAAAGTATGAGTCATTCACTTGGGGAGACTTCAAGAAGCAACTTTTGGTTCAAAAAAGGGTTGTTGGTAAAACGGCCCTCGAAAGATATCTAATTTCAAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

359

Amino Acids

40.4

Weight (kDa)

6.16

Isoelectric Point (pI)

40.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	46 - 145	1.4e-16	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	208 - 305	2.4e-32	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016855)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g19970
malus_domestica	MD04G1049700.v1.1 MD06G1050300.v1.1
prunus_persica	Prupe.5G060600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0204791
rosa_laevigata	RLG00000003433
rosa_multiflora	Rmu_sc0003221.1_g000048
rosa_roxburghii	Rroxscaffold_3G00252820
rosa_rugosa	Rorug07G0086000
rosa_samantha	Rh7AG216000 Rh7BG213100 Rh7CG229300 Rh7DG223600
rosa_wichuraiana	Rw7G018730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	258
AcoI	YGGCCR	1 cut(s)	95
AcsI	RAATTY	3 cut(s)	280, 397, 787
AcuI	CTGAAG	2 cut(s)	353, 863
AfiI	CCNNNNNNNGG	1 cut(s)	389
AgsI	TTSAA	8 cut(s)	241, 286, 517, 605, 740, 1006, 1025, 1071
AjuI	GAANNNNNNNTTGG	4 cut(s)	654, 686, 1001, 1033
AluBI	AGCT	4 cut(s)	331, 350, 560, 899
AluI	AGCT	4 cut(s)	331, 350, 560, 899
Alw26I	GTCTC	2 cut(s)	155, 993
AlwI	GGATC	1 cut(s)	258
AlwNI	CAGNNNCTG	1 cut(s)	331
Ama87I	CYCGRG	1 cut(s)	944
AoxI	GGCC	2 cut(s)	95, 1047
ApeKI	GCWGC	1 cut(s)	896
ApoI	RAATTY	3 cut(s)	280, 397, 787
ArsI	GACNNNNNNTTYG	2 cut(s)	48, 80
Asp700I	GAANNNNTTC	2 cut(s)	685, 791
AspLEI	GCGC	1 cut(s)	304
AspS9I	GGNCC	3 cut(s)	81, 955, 1048
AsuHPI	GGTGA	4 cut(s)	223, 426, 485, 821
AsuNHI	GCTAGC	1 cut(s)	556
AvaI	CYCGRG	1 cut(s)	944
AvaII	GGWCC	2 cut(s)	81, 955
BaeGI	GKGCMC	1 cut(s)	941
BalI	TGGCCA	1 cut(s)	97
BanII	GRGCYC	1 cut(s)	914
BbvI	GCAGC	1 cut(s)	908
BccI	CCATC	1 cut(s)	161
BceAI	ACGGC	1 cut(s)	1062
BclI	TGATCA	2 cut(s)	475, 624
BcoDI	GTCTC	2 cut(s)	155, 993
BfaI	CTAG	3 cut(s)	351, 557, 972
BglII	AGATCT	1 cut(s)	414
BisI	GCNGC	1 cut(s)	897
BlsI	GCNGC	1 cut(s)	898
Bme18I	GGWCC	2 cut(s)	81, 955
BmeT110I	CYCGRG	1 cut(s)	944
BmgT120I	GGNCC	3 cut(s)	81, 955, 1048
BmiI	GGNNCC	1 cut(s)	957
BmsI	GCATC	3 cut(s)	487, 543, 780
BmtI	GCTAGC	1 cut(s)	560
BplI	GAGNNNNNCTC	2 cut(s)	23, 55
BpmI	CTGGAG	1 cut(s)	413
BpuEI	CTTGAG	1 cut(s)	839
BsaBI	GATNNNNATC	2 cut(s)	480, 770
BsaJI	CCNNGG	3 cut(s)	45, 84, 404
BsaXI	ACNNNNNCTCC	2 cut(s)	411, 441
Bsc4I	CCNNNNNNNGG	1 cut(s)	389
Bse1I	ACTGG	1 cut(s)	430
Bse3DI	GCAATG	1 cut(s)	507
Bse8I	GATNNNNATC	2 cut(s)	480, 770
BseDI	CCNNGG	3 cut(s)	45, 84, 404
BseGI	GGATG	1 cut(s)	771
BseJI	GATNNNNATC	2 cut(s)	480, 770
BseLI	CCNNNNNNNGG	1 cut(s)	389
BseMI	GCAATG	1 cut(s)	507
BseNI	ACTGG	1 cut(s)	430
BseRI	GAGGAG	1 cut(s)	31
BseSI	GKGCMC	1 cut(s)	941
BseXI	GCAGC	1 cut(s)	908
BseYI	CCCAGC	1 cut(s)	676
BshFI	GGCC	2 cut(s)	97, 1049
BsiHKCI	CYCGRG	1 cut(s)	944
BslFI	GGGAC	1 cut(s)	63
BslI	CCNNNNNNNGG	1 cut(s)	389
BsmAI	GTCTC	2 cut(s)	155, 993
BsmFI	GGGAC	1 cut(s)	63
BsmI	GAATGC	3 cut(s)	220, 304, 523
BsnI	GGCC	2 cut(s)	97, 1049
BsoBI	CYCGRG	1 cut(s)	944
Bsp1286I	GDGCHC	2 cut(s)	914, 941
Bsp143I	GATC	7 cut(s)	250, 270, 310, 344, 414, 475, 624
Bsp19I	CCATGG	1 cut(s)	45
BspANI	GGCC	2 cut(s)	97, 1049
BspHI	TCATGA	2 cut(s)	109, 906
BspLI	GGNNCC	1 cut(s)	957
BspOI	GCTAGC	1 cut(s)	560
BspPI	GGATC	1 cut(s)	258
BsrDI	GCAATG	1 cut(s)	507
BsrI	ACTGG	1 cut(s)	430
BssECI	CCNNGG	3 cut(s)	45, 84, 404
BssMI	GATC	7 cut(s)	250, 270, 310, 344, 414, 475, 624
BssT1I	CCWWGG	3 cut(s)	45, 84, 404
Bst4CI	ACNGT	2 cut(s)	371, 423
Bst6I	CTCTTC	2 cut(s)	660, 839
BstC8I	GCNNGC	2 cut(s)	99, 558
BstDEI	CTNAG	1 cut(s)	59
BstDSI	CCRYGG	1 cut(s)	45
BstF5I	GGATG	1 cut(s)	771
BstHHI	GCGC	1 cut(s)	304
BstKTI	GATC	7 cut(s)	253, 273, 313, 347, 417, 478, 627
BstMAI	GTCTC	2 cut(s)	155, 993
BstMBI	GATC	7 cut(s)	250, 270, 310, 344, 414, 475, 624
BstMWI	GCNNNNNNNGC	2 cut(s)	455, 614
BstSLI	GKGCMC	1 cut(s)	941
BstV1I	GCAGC	1 cut(s)	908
BstX2I	RGATCY	1 cut(s)	414
BstYI	RGATCY	1 cut(s)	414
BsuRI	GGCC	2 cut(s)	97, 1049
BtgI	CCRYGG	1 cut(s)	45
BtsCI	GGATG	1 cut(s)	771
Cac8I	GCNNGC	2 cut(s)	99, 558
CaiI	CAGNNNCTG	1 cut(s)	331
CciI	TCATGA	2 cut(s)	109, 906
CfoI	GCGC	1 cut(s)	304
Cfr13I	GGNCC	3 cut(s)	81, 955, 1048
CviAII	CATG	8 cut(s)	46, 110, 131, 208, 254, 563, 907, 952
DdeI	CTNAG	1 cut(s)	59
DpnI	GATC	7 cut(s)	252, 272, 312, 346, 416, 477, 626
DpnII	GATC	7 cut(s)	250, 270, 310, 344, 414, 475, 624
EaeI	YGGCCR	1 cut(s)	95
Eam1104I	CTCTTC	2 cut(s)	660, 839
EarI	CTCTTC	2 cut(s)	660, 839
Eco130I	CCWWGG	3 cut(s)	45, 84, 404
Eco24I	GRGCYC	1 cut(s)	914
Eco32I	GATATC	2 cut(s)	641, 1061
Eco47I	GGWCC	2 cut(s)	81, 955
Eco57I	CTGAAG	2 cut(s)	353, 863
Eco88I	CYCGRG	1 cut(s)	944
EcoRI	GAATTC	1 cut(s)	787
EcoRV	GATATC	2 cut(s)	641, 1061
EcoT14I	CCWWGG	3 cut(s)	45, 84, 404
EcoT22I	ATGCAT	1 cut(s)	523
EcoT38I	GRGCYC	1 cut(s)	914
ErhI	CCWWGG	3 cut(s)	45, 84, 404
FaeI	CATG	8 cut(s)	49, 113, 134, 211, 257, 566, 910, 955
FaqI	GGGAC	1 cut(s)	63
FatI	CATG	8 cut(s)	45, 109, 130, 207, 253, 562, 906, 951
FbaI	TGATCA	2 cut(s)	475, 624
Fnu4HI	GCNGC	1 cut(s)	897
FokI	GGATG	1 cut(s)	758
FriOI	GRGCYC	1 cut(s)	914
Fsp4HI	GCNGC	1 cut(s)	897
FspBI	CTAG	3 cut(s)	351, 557, 972
GlaI	GCGC	1 cut(s)	303
GluI	GCNGC	1 cut(s)	897
GsaI	CCCAGC	1 cut(s)	680
GsuI	CTGGAG	1 cut(s)	413
HaeIII	GGCC	2 cut(s)	97, 1049
HhaI	GCGC	1 cut(s)	304
Hin1II	CATG	8 cut(s)	49, 113, 134, 211, 257, 566, 910, 955
Hin6I	GCGC	1 cut(s)	302
HinP1I	GCGC	1 cut(s)	302
HincII	GTYRAC	2 cut(s)	634, 871
HindII	GTYRAC	2 cut(s)	634, 871
HinfI	GANTC	5 cut(s)	32, 125, 630, 920, 983
HphI	GGTGA	4 cut(s)	223, 426, 485, 821
Hpy166II	GTNNAC	4 cut(s)	120, 356, 634, 871
Hpy188I	TCNGA	5 cut(s)	166, 629, 691, 786, 919
Hpy188III	TCNNGA	8 cut(s)	67, 110, 383, 578, 659, 907, 944, 1006
Hpy8I	GTNNAC	4 cut(s)	120, 356, 634, 871
Hpy99I	CGWCG	1 cut(s)	32
HpyAV	CCTTC	2 cut(s)	187, 328
HpyCH4III	ACNGT	2 cut(s)	371, 423
HpyCH4IV	ACGT	1 cut(s)	27
HpyCH4V	TGCA	7 cut(s)	10, 201, 374, 458, 500, 521, 856
HpyF10VI	GCNNNNNNNGC	2 cut(s)	455, 614
HpyF3I	CTNAG	1 cut(s)	59
HpySE526I	ACGT	1 cut(s)	27
Hsp92II	CATG	8 cut(s)	49, 113, 134, 211, 257, 566, 910, 955
HspAI	GCGC	1 cut(s)	302
Ksp22I	TGATCA	2 cut(s)	475, 624
Kzo9I	GATC	7 cut(s)	250, 270, 310, 344, 414, 475, 624
LmnI	GCTCC	2 cut(s)	322, 432
Lsp1109I	GCAGC	1 cut(s)	908
LweI	GCATC	3 cut(s)	487, 543, 780
MaeI	CTAG	3 cut(s)	351, 557, 972
MaeII	ACGT	1 cut(s)	27
MaeIII	GTNAC	6 cut(s)	33, 365, 432, 509, 714, 809
MalI	GATC	7 cut(s)	252, 272, 312, 346, 416, 477, 626
MboI	GATC	7 cut(s)	250, 270, 310, 344, 414, 475, 624
MfeI	CAATTG	1 cut(s)	930
MflI	RGATCY	1 cut(s)	414
MhlI	GDGCHC	2 cut(s)	914, 941
MlsI	TGGCCA	1 cut(s)	97
MluCI	AATT	6 cut(s)	184, 280, 397, 787, 930, 1065
MluNI	TGGCCA	1 cut(s)	97
MlyI	GAGTC	3 cut(s)	41, 639, 992
MmeI	TCCRAC	1 cut(s)	709
Mox20I	TGGCCA	1 cut(s)	97
Mph1103I	ATGCAT	1 cut(s)	523
MroXI	GAANNNNTTC	2 cut(s)	685, 791
MscI	TGGCCA	1 cut(s)	97
MseI	TTAA	1 cut(s)	704
Msp20I	TGGCCA	1 cut(s)	97
MunI	CAATTG	1 cut(s)	930
Mva1269I	GAATGC	3 cut(s)	220, 304, 523
MwoI	GCNNNNNNNGC	2 cut(s)	455, 614
NcoI	CCATGG	1 cut(s)	45
NdeII	GATC	7 cut(s)	250, 270, 310, 344, 414, 475, 624
NheI	GCTAGC	1 cut(s)	556
NlaIII	CATG	8 cut(s)	49, 113, 134, 211, 257, 566, 910, 955
NlaIV	GGNNCC	1 cut(s)	957
NmuCI	GTSAC	3 cut(s)	33, 432, 809
NsiI	ATGCAT	1 cut(s)	523
PagI	TCATGA	2 cut(s)	109, 906
PctI	GAATGC	3 cut(s)	220, 304, 523
PdmI	GAANNNNTTC	2 cut(s)	685, 791
PfeI	GAWTC	2 cut(s)	125, 920
PkrI	GCNGC	1 cut(s)	898
PleI	GAGTC	3 cut(s)	40, 638, 991
PpsI	GAGTC	3 cut(s)	40, 638, 991
PspFI	CCCAGC	1 cut(s)	676
PspN4I	GGNNCC	1 cut(s)	957
PspPI	GGNCC	3 cut(s)	81, 955, 1048
PstNI	CAGNNNCTG	1 cut(s)	331
PsuI	RGATCY	1 cut(s)	414
SaqAI	TTAA	1 cut(s)	704
SatI	GCNGC	1 cut(s)	897
Sau3AI	GATC	7 cut(s)	250, 270, 310, 344, 414, 475, 624
Sau96I	GGNCC	3 cut(s)	81, 955, 1048
SchI	GAGTC	3 cut(s)	41, 639, 992
SduI	GDGCHC	2 cut(s)	914, 941
SetI	ASST	9 cut(s)	30, 198, 207, 333, 352, 468, 562, 704, 901
SfaNI	GCATC	3 cut(s)	487, 543, 780
SinI	GGWCC	2 cut(s)	81, 955
SmlI	CTYRAG	1 cut(s)	818
SmoI	CTYRAG	1 cut(s)	818
Sse9I	AATT	6 cut(s)	184, 280, 397, 787, 930, 1065
SspMI	CTAG	3 cut(s)	351, 557, 972
StyI	CCWWGG	3 cut(s)	45, 84, 404
TaaI	ACNGT	2 cut(s)	371, 423
TaiI	ACGT	1 cut(s)	30
TaqI	TCGA	3 cut(s)	15, 30, 1053
TasI	AATT	6 cut(s)	184, 280, 397, 787, 930, 1065
TfiI	GAWTC	2 cut(s)	125, 920
Tru1I	TTAA	1 cut(s)	704
Tru9I	TTAA	1 cut(s)	704
TseFI	GTSAC	3 cut(s)	33, 432, 809
TseI	GCWGC	1 cut(s)	896
Tsp45I	GTSAC	3 cut(s)	33, 432, 809
TspDTI	ATGAA	6 cut(s)	64, 311, 764, 784, 895, 940
TspGWI	ACGGA	1 cut(s)	764
VpaK11BI	GGWCC	2 cut(s)	81, 955
XapI	RAATTY	3 cut(s)	280, 397, 787
XmnI	GAANNNNTTC	2 cut(s)	685, 791
XspI	CTAG	3 cut(s)	351, 557, 972
Zsp2I	ATGCAT	1 cut(s)	523

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.