RLG00000005879

Conserved oligomeric Golgi complex subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0018222
Physical Location & Seq
Forward (+)
2518296 .. 2518655
360 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000005879

Sequence Viewer

Length: 360 bp
ATGGTGGATCCAATTCCATCAGCACCGCACAGATCCAACACCAACTTCTTCTCCAACCCCCTCGACTCCCACCCCCTCTGGTTCAAGCCCGCGCTCTTCCTCTCCCCGGACTTTGACTCCGAGGCCTACATCTCCGACCTCCGAACCTTTGTCCCCTTCAACACCTTCCGATCCGAGCTCCAGTCCTATCTCGCCTCCCTCAACCACGACCTCATTGACCTCATCAATCGTGACTACGCTGACTTCGTCAACCTCAGCACCAAGCTCGTCGACGTCGACGTCGACTCCGCAGTGGTGCGCATGCGGGCCCCACTCCTGGAGCTCAGGGAGAAGATCGAGCAGTTCAGAGGCTCCGTGTAG

Protein Analysis

120

Amino Acids

13.68

Weight (kDa)

4.83

Isoelectric Point (pI)

43.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
COG2_N PF06148 26 - 94 1.6e-24 COG2 N-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 278
AatII GACGTC 2 cut(s) 276, 282
Acc16I TGCGCA 1 cut(s) 299
AccI GTMKAC 3 cut(s) 270, 276, 282
AccII CGCG 1 cut(s) 92
AciI CCGC 4 cut(s) 26, 90, 288, 304
AclWI GGATC 4 cut(s) 2, 15, 27, 165
AcyI GRCGYC 2 cut(s) 273, 279
AfiI CCNNNNNNNGG 2 cut(s) 106, 316
AgsI TTSAA 2 cut(s) 85, 160
AjnI CCWGG 1 cut(s) 315
AjuI GAANNNNNNNTTGG 2 cut(s) 29, 61
AluBI AGCT 3 cut(s) 178, 265, 322
AluI AGCT 3 cut(s) 178, 265, 322
Alw21I GWGCWC 2 cut(s) 180, 324
AlwI GGATC 4 cut(s) 2, 15, 27, 165
AoxI GGCC 2 cut(s) 123, 306
ApaI GGGCCC 1 cut(s) 310
AspLEI GCGC 2 cut(s) 94, 300
AspS9I GGNCC 2 cut(s) 306, 307
AsuC2I CCSGG 1 cut(s) 107
BaeGI GKGCMC 1 cut(s) 310
BamHI GGATCC 1 cut(s) 7
BanII GRGCYC 3 cut(s) 180, 310, 324
Bbv12I GWGCWC 2 cut(s) 180, 324
BbvCI CCTCAGC 1 cut(s) 254
BccI CCATC 1 cut(s) 25
BcgI CGANNNNNNTGC 2 cut(s) 247, 281
BciT130I CCWGG 1 cut(s) 317
BcnI CCSGG 1 cut(s) 107
Bme1390I CCNGG 2 cut(s) 107, 317
BmgT120I GGNCC 2 cut(s) 306, 307
BmiI GGNNCC 4 cut(s) 9, 308, 309, 352
BmrFI CCNGG 2 cut(s) 107, 317
BpmI CTGGAG 2 cut(s) 164, 338
Bpu10I CCTNAGC 2 cut(s) 254, 323
BpuMI CCSGG 1 cut(s) 107
BsaHI GRCGYC 2 cut(s) 273, 279
BsaJI CCNNGG 2 cut(s) 105, 120
BsaXI ACNNNNNCTCC 6 cut(s) 35, 65, 101, 131, 269, 299
Bsc4I CCNNNNNNNGG 2 cut(s) 106, 316
Bse1I ACTGG 1 cut(s) 181
BseBI CCWGG 1 cut(s) 317
BseDI CCNNGG 2 cut(s) 105, 120
BseLI CCNNNNNNNGG 2 cut(s) 106, 316
BseMII CTCAG 2 cut(s) 268, 337
BseNI ACTGG 1 cut(s) 181
BseSI GKGCMC 1 cut(s) 310
Bsh1236I CGCG 1 cut(s) 92
BshFI GGCC 2 cut(s) 125, 308
BsiHKAI GWGCWC 2 cut(s) 180, 324
BsiSI CCGG 1 cut(s) 107
BslFI GGGAC 1 cut(s) 137
BslI CCNNNNNNNGG 2 cut(s) 106, 316
BsmFI GGGAC 1 cut(s) 137
BsnI GGCC 2 cut(s) 125, 308
Bsp120I GGGCCC 1 cut(s) 306
Bsp1286I GDGCHC 3 cut(s) 180, 310, 324
Bsp143I GATC 4 cut(s) 7, 32, 170, 333
BspACI CCGC 4 cut(s) 26, 90, 288, 304
BspANI GGCC 2 cut(s) 125, 308
BspCNI CTCAG 2 cut(s) 267, 336
BspFNI CGCG 1 cut(s) 92
BspLI GGNNCC 4 cut(s) 9, 308, 309, 352
BspPI GGATC 4 cut(s) 2, 15, 27, 165
BspQI GCTCTTC 1 cut(s) 101
BsrI ACTGG 1 cut(s) 181
BssECI CCNNGG 2 cut(s) 105, 120
BssMI GATC 4 cut(s) 7, 32, 170, 333
BssNI GRCGYC 2 cut(s) 273, 279
Bst2UI CCWGG 1 cut(s) 317
Bst6I CTCTTC 1 cut(s) 101
BstACI GRCGYC 2 cut(s) 273, 279
BstC8I GCNNGC 3 cut(s) 90, 302, 306
BstDEI CTNAG 2 cut(s) 254, 323
BstFNI CGCG 1 cut(s) 92
BstHHI GCGC 2 cut(s) 94, 300
BstKTI GATC 4 cut(s) 10, 35, 173, 336
BstMBI GATC 4 cut(s) 7, 32, 170, 333
BstNI CCWGG 1 cut(s) 317
BstNSI RCATGY 1 cut(s) 304
BstSCI CCNGG 2 cut(s) 105, 315
BstSLI GKGCMC 1 cut(s) 310
BstUI CGCG 1 cut(s) 92
BstX2I RGATCY 2 cut(s) 7, 32
BstYI RGATCY 2 cut(s) 7, 32
BsuRI GGCC 2 cut(s) 125, 308
BtsI GCAGTG 1 cut(s) 297
BtsIMutI CAGTG 1 cut(s) 297
Cac8I GCNNGC 3 cut(s) 90, 302, 306
CfoI GCGC 2 cut(s) 94, 300
Cfr13I GGNCC 2 cut(s) 306, 307
CviAII CATG 1 cut(s) 301
CviJI RGCY 7 cut(s) 88, 125, 178, 265, 308, 322, 351
CviKI_1 RGCY 7 cut(s) 88, 125, 178, 265, 308, 322, 351
DdeI CTNAG 2 cut(s) 254, 323
DpnI GATC 4 cut(s) 9, 34, 172, 335
DpnII GATC 4 cut(s) 7, 32, 170, 333
DrdI GACNNNNNNGTC 1 cut(s) 278
DseDI GACNNNNNNGTC 1 cut(s) 278
Eam1104I CTCTTC 1 cut(s) 101
EarI CTCTTC 1 cut(s) 101
Ecl136II GAGCTC 2 cut(s) 178, 322
Eco147I AGGCCT 1 cut(s) 125
Eco24I GRGCYC 3 cut(s) 180, 310, 324
Eco53kI GAGCTC 2 cut(s) 178, 322
EcoICRI GAGCTC 2 cut(s) 178, 322
EcoO109I RGGNCCY 1 cut(s) 307
EcoRII CCWGG 1 cut(s) 315
EcoT38I GRGCYC 3 cut(s) 180, 310, 324
FaeI CATG 1 cut(s) 304
FaiI YATR 1 cut(s) 302
FaqI GGGAC 1 cut(s) 137
FatI CATG 1 cut(s) 300
FauI CCCGC 2 cut(s) 97, 297
FblI GTMKAC 3 cut(s) 270, 276, 282
FriOI GRGCYC 3 cut(s) 180, 310, 324
FspAI RTGCGCAY 1 cut(s) 299
FspI TGCGCA 1 cut(s) 299
GlaI GCGC 2 cut(s) 93, 299
GsuI CTGGAG 2 cut(s) 164, 338
HaeIII GGCC 2 cut(s) 125, 308
HapII CCGG 1 cut(s) 107
HhaI GCGC 2 cut(s) 94, 300
Hin1I GRCGYC 2 cut(s) 273, 279
Hin1II CATG 1 cut(s) 304
Hin6I GCGC 2 cut(s) 92, 298
HinP1I GCGC 2 cut(s) 92, 298
HincII GTYRAC 4 cut(s) 250, 271, 277, 283
HindII GTYRAC 4 cut(s) 250, 271, 277, 283
HinfI GANTC 3 cut(s) 65, 116, 284
HpaII CCGG 1 cut(s) 107
Hpy166II GTNNAC 4 cut(s) 250, 271, 277, 283
Hpy188I TCNGA 6 cut(s) 121, 136, 143, 170, 175, 347
Hpy188III TCNNGA 1 cut(s) 230
Hpy8I GTNNAC 4 cut(s) 250, 271, 277, 283
Hpy99I CGWCG 5 cut(s) 272, 275, 278, 281, 284
HpyAV CCTTC 2 cut(s) 166, 175
HpyCH4IV ACGT 2 cut(s) 273, 279
HpyF3I CTNAG 2 cut(s) 254, 323
HpySE526I ACGT 2 cut(s) 273, 279
Hsp92I GRCGYC 2 cut(s) 273, 279
Hsp92II CATG 1 cut(s) 304
HspAI GCGC 2 cut(s) 92, 298
Kzo9I GATC 4 cut(s) 7, 32, 170, 333
LguI GCTCTTC 1 cut(s) 101
LmnI GCTCC 3 cut(s) 183, 319, 356
LpnPI CCDG 6 cut(s) 64, 120, 194, 302, 310, 329
MaeII ACGT 2 cut(s) 273, 279
MaeIII GTNAC 1 cut(s) 230
MalI GATC 4 cut(s) 9, 34, 172, 335
MboI GATC 4 cut(s) 7, 32, 170, 333
MboII GAAGA 3 cut(s) 40, 88, 343
MflI RGATCY 2 cut(s) 7, 32
MhlI GDGCHC 3 cut(s) 180, 310, 324
MluCI AATT 1 cut(s) 12
MlyI GAGTC 3 cut(s) 59, 110, 278
MmeI TCCRAC 3 cut(s) 60, 78, 159
MspI CCGG 1 cut(s) 107
MspR9I CCNGG 2 cut(s) 107, 317
MvaI CCWGG 1 cut(s) 317
MvnI CGCG 1 cut(s) 92
NciI CCSGG 1 cut(s) 107
NdeII GATC 4 cut(s) 7, 32, 170, 333
NlaIII CATG 1 cut(s) 304
NlaIV GGNNCC 4 cut(s) 9, 308, 309, 352
NmuCI GTSAC 1 cut(s) 230
NsbI TGCGCA 1 cut(s) 299
NspI RCATGY 1 cut(s) 304
PaeI GCATGC 1 cut(s) 304
PceI AGGCCT 1 cut(s) 125
PciSI GCTCTTC 1 cut(s) 101
PcsI WCGNNNNNNNCGW 4 cut(s) 243, 273, 276, 279
PflFI GACNNNGTC 1 cut(s) 245
PfoI TCCNGGA 1 cut(s) 315
PleI GAGTC 3 cut(s) 59, 110, 278
PpsI GAGTC 3 cut(s) 59, 110, 278
Psp124BI GAGCTC 2 cut(s) 180, 324
Psp6I CCWGG 1 cut(s) 315
PspGI CCWGG 1 cut(s) 315
PspN4I GGNNCC 4 cut(s) 9, 308, 309, 352
PspOMI GGGCCC 1 cut(s) 306
PspPI GGNCC 2 cut(s) 306, 307
PsuI RGATCY 2 cut(s) 7, 32
PsyI GACNNNGTC 1 cut(s) 245
SacI GAGCTC 2 cut(s) 180, 324
SalI GTCGAC 3 cut(s) 269, 275, 281
SapI GCTCTTC 1 cut(s) 101
Sau3AI GATC 4 cut(s) 7, 32, 170, 333
Sau96I GGNCC 2 cut(s) 306, 307
SchI GAGTC 3 cut(s) 59, 110, 278
ScrFI CCNGG 2 cut(s) 107, 317
SduI GDGCHC 3 cut(s) 180, 310, 324
SgrDI CGTCGACG 2 cut(s) 269, 275
SphI GCATGC 1 cut(s) 304
Sse9I AATT 1 cut(s) 12
SseBI AGGCCT 1 cut(s) 125
SsiI CCGC 4 cut(s) 26, 90, 288, 304
SstI GAGCTC 2 cut(s) 180, 324
StuI AGGCCT 1 cut(s) 125
StyD4I CCNGG 2 cut(s) 105, 315
TaiI ACGT 2 cut(s) 276, 282
TaqI TCGA 5 cut(s) 63, 270, 276, 282, 336
TasI AATT 1 cut(s) 12
TscAI CASTG 1 cut(s) 297
TseFI GTSAC 1 cut(s) 230
Tsp45I GTSAC 1 cut(s) 230
TspGWI ACGGA 1 cut(s) 343
TspRI CASTG 1 cut(s) 297
Tth111I GACNNNGTC 1 cut(s) 245
XceI RCATGY 1 cut(s) 304
XmiI GTMKAC 3 cut(s) 270, 276, 282
ZraI GACGTC 2 cut(s) 274, 280
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.