Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0018222

Physical Location & Seq

Genomic Coordinates Reverse (-)

27291860 .. 27294175

Gene Structure 2316 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00022180.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 291 bp

ATGAAATGGCAAGAGTTGGCGGAAAATCTCCAGTCCTATCTTGCCTCCCTCAACCACGACCTCATCGACCTCATCAACCGCTACTACGCCGACTTCGTCAACCTCAGCGCCAAGCTCGTCGACGTCGACTCTGCCGTGGTGGGCATGCGGGCCTCGCTCCTGGAGCTCAGGGAGAAGATCGAGCAGTTCAAAGGCTCTGTGCAGGGCCCGCTTGTGGCGCTGACCAATGGATTGAAGCAAAGATCCGAGGCCGCCGAGGCTAGAGAGATGGAGGCTGCTCTTAGGGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005795 GO:0005829 GO:0006810 GO:0006891 GO:0006996 GO:0007030 GO:0008104 GO:0008150 GO:0008565 GO:0009987 GO:0010256 GO:0012505 GO:0015031 GO:0015833 GO:0016043 GO:0016192 GO:0017119 GO:0031984 GO:0032991 GO:0033036 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0044877 GO:0045184 GO:0048193 GO:0051179 GO:0051234 GO:0071702 GO:0071705 GO:0071840 GO:0098791 GO:0099023

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

COG2 DUF3510

Protein Analysis

96

Amino Acids

10.76

Weight (kDa)

5.09

Isoelectric Point (pI)

29.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
COG2_N	PF06148	4 - 50	7.8e-12	COG2 N-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018222)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000005879
rosa_multiflora	Rmu_sc0002073.1_g000021 Rmu_sc0002407.1_g000012 Rmu_sc0009827.1_g000006 Rmu_sc0036508.1_g000001
rosa_roxburghii	Rroxscaffold_1G00022180
rosa_samantha	Rh2BG395400 Rh2DG373500 Rh4CG071600 Rh6AG235100 Rh7DG176300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	126
AccI	GTMKAC	2 cut(s)	120, 126
AciI	CCGC	5 cut(s)	20, 79, 148, 209, 252
AclWI	GGATC	1 cut(s)	237
AcyI	GRCGYC	1 cut(s)	123
AfiI	CCNNNNNNNGG	1 cut(s)	214
AgsI	TTSAA	2 cut(s)	190, 235
AjnI	CCWGG	1 cut(s)	159
AluBI	AGCT	2 cut(s)	115, 166
AluI	AGCT	2 cut(s)	115, 166
Alw21I	GWGCWC	1 cut(s)	168
AlwI	GGATC	1 cut(s)	237
AoxI	GGCC	3 cut(s)	150, 205, 249
ApaI	GGGCCC	1 cut(s)	209
ApeKI	GCWGC	1 cut(s)	275
AspLEI	GCGC	2 cut(s)	110, 220
AspS9I	GGNCC	3 cut(s)	150, 205, 206
BaeGI	GKGCMC	1 cut(s)	209
BanII	GRGCYC	2 cut(s)	168, 209
Bbv12I	GWGCWC	1 cut(s)	168
BbvCI	CCTCAGC	1 cut(s)	104
BbvI	GCAGC	1 cut(s)	262
BccI	CCATC	1 cut(s)	262
BceAI	ACGGC	1 cut(s)	119
BciT130I	CCWGG	1 cut(s)	161
BfaI	CTAG	1 cut(s)	261
BfoI	RGCGCY	2 cut(s)	111, 221
BglI	GCCNNNNNGGC	1 cut(s)	257
BisI	GCNGC	2 cut(s)	252, 276
BlsI	GCNGC	2 cut(s)	253, 277
Bme1390I	CCNGG	1 cut(s)	161
BmgT120I	GGNCC	3 cut(s)	150, 205, 206
BmiI	GGNNCC	1 cut(s)	207
BmrFI	CCNGG	1 cut(s)	161
BpmI	CTGGAG	2 cut(s)	14, 182
Bpu10I	CCTNAGC	2 cut(s)	104, 167
BsaHI	GRCGYC	1 cut(s)	123
BsaJI	CCNNGG	3 cut(s)	135, 246, 255
Bsc4I	CCNNNNNNNGG	1 cut(s)	214
Bse1I	ACTGG	1 cut(s)	31
BseBI	CCWGG	1 cut(s)	161
BseDI	CCNNGG	3 cut(s)	135, 246, 255
BseLI	CCNNNNNNNGG	1 cut(s)	214
BseMII	CTCAG	2 cut(s)	118, 181
BseNI	ACTGG	1 cut(s)	31
BseSI	GKGCMC	1 cut(s)	209
BseXI	GCAGC	1 cut(s)	262
BsgI	GTGCAG	1 cut(s)	221
BshFI	GGCC	3 cut(s)	152, 207, 251
BsiHKAI	GWGCWC	1 cut(s)	168
BslI	CCNNNNNNNGG	1 cut(s)	214
BsnI	GGCC	3 cut(s)	152, 207, 251
Bsp120I	GGGCCC	1 cut(s)	205
Bsp1286I	GDGCHC	2 cut(s)	168, 209
Bsp143I	GATC	2 cut(s)	177, 242
BspACI	CCGC	5 cut(s)	20, 79, 148, 209, 252
BspANI	GGCC	3 cut(s)	152, 207, 251
BspCNI	CTCAG	2 cut(s)	117, 180
BspLI	GGNNCC	1 cut(s)	207
BspPI	GGATC	1 cut(s)	237
BsrI	ACTGG	1 cut(s)	31
BssECI	CCNNGG	3 cut(s)	135, 246, 255
BssMI	GATC	2 cut(s)	177, 242
BssNI	GRCGYC	1 cut(s)	123
Bst2UI	CCWGG	1 cut(s)	161
BstACI	GRCGYC	1 cut(s)	123
BstC8I	GCNNGC	3 cut(s)	146, 150, 209
BstDEI	CTNAG	3 cut(s)	104, 167, 281
BstDSI	CCRYGG	1 cut(s)	135
BstH2I	RGCGCY	2 cut(s)	111, 221
BstHHI	GCGC	2 cut(s)	110, 220
BstKTI	GATC	2 cut(s)	180, 245
BstMBI	GATC	2 cut(s)	177, 242
BstMWI	GCNNNNNNNGC	5 cut(s)	154, 163, 208, 217, 257
BstNI	CCWGG	1 cut(s)	161
BstNSI	RCATGY	1 cut(s)	148
BstSCI	CCNGG	1 cut(s)	159
BstSLI	GKGCMC	1 cut(s)	209
BstV1I	GCAGC	1 cut(s)	262
BstX2I	RGATCY	1 cut(s)	242
BstYI	RGATCY	1 cut(s)	242
BsuRI	GGCC	3 cut(s)	152, 207, 251
BtgI	CCRYGG	1 cut(s)	135
Cac8I	GCNNGC	3 cut(s)	146, 150, 209
CfoI	GCGC	2 cut(s)	110, 220
Cfr13I	GGNCC	3 cut(s)	150, 205, 206
CviAII	CATG	1 cut(s)	145
CviJI	RGCY	8 cut(s)	115, 152, 166, 195, 207, 251, 260, 275
CviKI_1	RGCY	8 cut(s)	115, 152, 166, 195, 207, 251, 260, 275
DdeI	CTNAG	3 cut(s)	104, 167, 281
DpnI	GATC	2 cut(s)	179, 244
DpnII	GATC	2 cut(s)	177, 242
EciI	GGCGGA	1 cut(s)	35
Ecl136II	GAGCTC	1 cut(s)	166
Eco24I	GRGCYC	2 cut(s)	168, 209
Eco53kI	GAGCTC	1 cut(s)	166
EcoICRI	GAGCTC	1 cut(s)	166
EcoO109I	RGGNCCY	1 cut(s)	205
EcoRII	CCWGG	1 cut(s)	159
EcoT38I	GRGCYC	2 cut(s)	168, 209
FaeI	CATG	1 cut(s)	148
FaiI	YATR	1 cut(s)	146
FatI	CATG	1 cut(s)	144
FauI	CCCGC	2 cut(s)	141, 216
FblI	GTMKAC	2 cut(s)	120, 126
Fnu4HI	GCNGC	2 cut(s)	252, 276
FriOI	GRGCYC	2 cut(s)	168, 209
Fsp4HI	GCNGC	2 cut(s)	252, 276
FspBI	CTAG	1 cut(s)	261
GlaI	GCGC	2 cut(s)	109, 219
GluI	GCNGC	2 cut(s)	252, 276
GsuI	CTGGAG	2 cut(s)	14, 182
HaeII	RGCGCY	2 cut(s)	111, 221
HaeIII	GGCC	3 cut(s)	152, 207, 251
HhaI	GCGC	2 cut(s)	110, 220
Hin1I	GRCGYC	1 cut(s)	123
Hin1II	CATG	1 cut(s)	148
Hin6I	GCGC	2 cut(s)	108, 218
HinP1I	GCGC	2 cut(s)	108, 218
HincII	GTYRAC	3 cut(s)	100, 121, 127
HindII	GTYRAC	3 cut(s)	100, 121, 127
HinfI	GANTC	1 cut(s)	128
Hpy166II	GTNNAC	3 cut(s)	100, 121, 127
Hpy188I	TCNGA	1 cut(s)	247
Hpy8I	GTNNAC	3 cut(s)	100, 121, 127
Hpy99I	CGWCG	3 cut(s)	122, 125, 128
HpyCH4IV	ACGT	1 cut(s)	123
HpyCH4V	TGCA	1 cut(s)	202
HpyF10VI	GCNNNNNNNGC	5 cut(s)	154, 163, 208, 217, 257
HpyF3I	CTNAG	3 cut(s)	104, 167, 281
HpySE526I	ACGT	1 cut(s)	123
Hsp92I	GRCGYC	1 cut(s)	123
Hsp92II	CATG	1 cut(s)	148
HspAI	GCGC	2 cut(s)	108, 218
Kzo9I	GATC	2 cut(s)	177, 242
LmnI	GCTCC	2 cut(s)	162, 163
LpnPI	CCDG	5 cut(s)	44, 146, 154, 173, 188
Lsp1109I	GCAGC	1 cut(s)	262
MaeI	CTAG	1 cut(s)	261
MaeII	ACGT	1 cut(s)	123
MalI	GATC	2 cut(s)	179, 244
MboI	GATC	2 cut(s)	177, 242
MboII	GAAGA	1 cut(s)	187
MflI	RGATCY	1 cut(s)	242
MhlI	GDGCHC	2 cut(s)	168, 209
MlyI	GAGTC	1 cut(s)	122
MnlI	CCTC	9 cut(s)	55, 59, 71, 80, 113, 163, 241, 250, 265
MspR9I	CCNGG	1 cut(s)	161
MvaI	CCWGG	1 cut(s)	161
MwoI	GCNNNNNNNGC	5 cut(s)	154, 163, 208, 217, 257
NdeII	GATC	2 cut(s)	177, 242
NlaIII	CATG	1 cut(s)	148
NlaIV	GGNNCC	1 cut(s)	207
NmeAIII	GCCGAG	1 cut(s)	280
NspI	RCATGY	1 cut(s)	148
PaeI	GCATGC	1 cut(s)	148
PcsI	WCGNNNNNNNCGW	4 cut(s)	63, 93, 123, 132
PflFI	GACNNNGTC	1 cut(s)	95
PfoI	TCCNGGA	1 cut(s)	159
PkrI	GCNGC	2 cut(s)	253, 277
PleI	GAGTC	1 cut(s)	122
PpsI	GAGTC	1 cut(s)	122
Psp124BI	GAGCTC	1 cut(s)	168
Psp6I	CCWGG	1 cut(s)	159
PspGI	CCWGG	1 cut(s)	159
PspN4I	GGNNCC	1 cut(s)	207
PspOMI	GGGCCC	1 cut(s)	205
PspPI	GGNCC	3 cut(s)	150, 205, 206
PsuI	RGATCY	1 cut(s)	242
PsyI	GACNNNGTC	1 cut(s)	95
SacI	GAGCTC	1 cut(s)	168
SalI	GTCGAC	2 cut(s)	119, 125
SatI	GCNGC	2 cut(s)	252, 276
Sau3AI	GATC	2 cut(s)	177, 242
Sau96I	GGNCC	3 cut(s)	150, 205, 206
SchI	GAGTC	1 cut(s)	122
ScrFI	CCNGG	1 cut(s)	161
SduI	GDGCHC	2 cut(s)	168, 209
SetI	ASST	6 cut(s)	63, 72, 105, 117, 126, 168
SgrDI	CGTCGACG	1 cut(s)	119
SphI	GCATGC	1 cut(s)	148
SsiI	CCGC	5 cut(s)	20, 79, 148, 209, 252
SspMI	CTAG	1 cut(s)	261
SstI	GAGCTC	1 cut(s)	168
StyD4I	CCNGG	1 cut(s)	159
TaiI	ACGT	1 cut(s)	126
TaqI	TCGA	4 cut(s)	66, 120, 126, 180
TauI	GCSGC	1 cut(s)	254
TseI	GCWGC	1 cut(s)	275
TspDTI	ATGAA	1 cut(s)	17
Tth111I	GACNNNGTC	1 cut(s)	95
XceI	RCATGY	1 cut(s)	148
XmiI	GTMKAC	2 cut(s)	120, 126
XspI	CTAG	1 cut(s)	261
ZraI	GACGTC	1 cut(s)	124

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.