Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0009827.1

Orthogroup ID

OG0018222

Physical Location & Seq

Genomic Coordinates Reverse (-)

19136 .. 22197

Gene Structure 3062 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0009827.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 669 bp

atgtcaattgatgtgacagcgctccaatcctatctcgcctccctcaaccacgactacgctgacttagtcaacctcaccaccaagctcgtcgacgttgactccgccgtggagggcatgcgggccccgctcttggagctcagggagaagatcaagcagttcagaggctccgtgcagggctcgcttgtggagttgaacaatggattgaagcagagatccgaggcctccgaggctagggagatggaggctgctcgaagaaaacagagatggaagctgctcttggtatcgtgtgggttgcgggttgcgggtctaaatgtcaggcctagactgcgtcgtcggagagagcttgggccagagaaaggagtcgtcgcgggtgagctgcttgcggaggagaatggcggacatggctcgggcctcctacggcggcgagaactggaggagagattgaagagggctcggcctggatcgctgctcgttgtcagaggaaatcaggtgggagattacgatcttgaaagtggccgggtcggggccgagaacggtcgcgagtggcgactgctggagctgagtcgactcggccattgcaaagagagagagagagggagaggaggaggaaggagggaaggagggggagagagagagaggagagagaggtacggcagtggttgtaattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005795 GO:0005829 GO:0006810 GO:0006891 GO:0006996 GO:0007030 GO:0008104 GO:0008150 GO:0008565 GO:0009987 GO:0010256 GO:0012505 GO:0015031 GO:0015833 GO:0016043 GO:0016192 GO:0017119 GO:0031984 GO:0032991 GO:0033036 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0044877 GO:0045184 GO:0048193 GO:0051179 GO:0051234 GO:0071702 GO:0071705 GO:0071840 GO:0098791 GO:0099023

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

COG2 DUF3510

Protein Analysis

222

Amino Acids

24.88

Weight (kDa)

10.05

Isoelectric Point (pI)

51.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018222)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000005879
rosa_multiflora	Rmu_sc0002073.1_g000021 Rmu_sc0002407.1_g000012 Rmu_sc0009827.1_g000006 Rmu_sc0036508.1_g000001
rosa_roxburghii	Rroxscaffold_1G00022180
rosa_samantha	Rh2BG395400 Rh2DG373500 Rh4CG071600 Rh6AG235100 Rh7DG176300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	330
AccBSI	CCGCTC	1 cut(s)	127
AccI	GTMKAC	2 cut(s)	90, 565
AccII	CGCG	2 cut(s)	368, 540
AciI	CCGC	9 cut(s)	102, 118, 125, 295, 302, 368, 383, 396, 421
AclWI	GGATC	2 cut(s)	207, 469
AcoI	YGGCCR	2 cut(s)	514, 571
AfaI	GTAC	1 cut(s)	650
AfeI	AGCGCT	1 cut(s)	21
AfiI	CCNNNNNNNGG	4 cut(s)	130, 231, 356, 523
AgsI	TTSAA	4 cut(s)	193, 205, 445, 509
AjnI	CCWGG	1 cut(s)	457
AjuI	GAANNNNNNNTTGG	2 cut(s)	260, 292
AluBI	AGCT	6 cut(s)	85, 136, 271, 343, 376, 559
AluI	AGCT	6 cut(s)	85, 136, 271, 343, 376, 559
Alw21I	GWGCWC	1 cut(s)	138
AlwI	GGATC	2 cut(s)	207, 469
Ama87I	CYCGRG	1 cut(s)	406
Aor51HI	AGCGCT	1 cut(s)	21
AoxI	GGCC	9 cut(s)	120, 219, 317, 347, 409, 455, 514, 525, 571
ApaI	GGGCCC	1 cut(s)	124
ApeKI	GCWGC	4 cut(s)	245, 271, 376, 466
AspLEI	GCGC	1 cut(s)	22
AspS9I	GGNCC	5 cut(s)	120, 121, 347, 409, 525
AsuC2I	CCSGG	1 cut(s)	518
AsuHPI	GGTGA	2 cut(s)	67, 383
AvaI	CYCGRG	1 cut(s)	406
BaeGI	GKGCMC	1 cut(s)	124
BaeI	ACNNNNGTAYC	1 cut(s)	640
BanII	GRGCYC	4 cut(s)	124, 138, 179, 454
Bbv12I	GWGCWC	1 cut(s)	138
BbvI	GCAGC	4 cut(s)	232, 258, 363, 453
BccI	CCATC	2 cut(s)	232, 258
BceAI	ACGGC	3 cut(s)	89, 434, 667
BciT130I	CCWGG	1 cut(s)	459
BcnI	CCSGG	1 cut(s)	518
BfaI	CTAG	2 cut(s)	231, 321
BfoI	RGCGCY	1 cut(s)	23
BglI	GCCNNNNNGGC	1 cut(s)	227
BisI	GCNGC	5 cut(s)	246, 272, 377, 422, 467
BlsI	GCNGC	5 cut(s)	247, 273, 378, 423, 468
Bme1390I	CCNGG	2 cut(s)	459, 518
BmeT110I	CYCGRG	1 cut(s)	406
BmgT120I	GGNCC	5 cut(s)	120, 121, 347, 409, 525
BmiI	GGNNCC	4 cut(s)	122, 123, 166, 526
BmrFI	CCNGG	2 cut(s)	459, 518
BpmI	CTGGAG	2 cut(s)	452, 575
Bpu10I	CCTNAGC	1 cut(s)	137
BpuMI	CCSGG	1 cut(s)	518
BsaBI	GATNNNNATC	1 cut(s)	501
BsaJI	CCNNGG	3 cut(s)	105, 216, 225
BsaXI	ACNNNNNCTCC	2 cut(s)	83, 113
Bsc4I	CCNNNNNNNGG	4 cut(s)	130, 231, 356, 523
Bse1I	ACTGG	1 cut(s)	435
Bse3DI	GCAATG	1 cut(s)	574
Bse8I	GATNNNNATC	1 cut(s)	501
BseBI	CCWGG	1 cut(s)	459
BseDI	CCNNGG	3 cut(s)	105, 216, 225
BseJI	GATNNNNATC	1 cut(s)	501
BseLI	CCNNNNNNNGG	4 cut(s)	130, 231, 356, 523
BseMI	GCAATG	1 cut(s)	574
BseMII	CTCAG	2 cut(s)	151, 551
BseNI	ACTGG	1 cut(s)	435
BseRI	GAGGAG	5 cut(s)	401, 449, 615, 618, 652
BseSI	GKGCMC	1 cut(s)	124
BseXI	GCAGC	4 cut(s)	232, 258, 363, 453
BsgI	GTGCAG	1 cut(s)	191
Bsh1236I	CGCG	2 cut(s)	368, 540
Bsh1285I	CGRYCG	1 cut(s)	538
BshFI	GGCC	9 cut(s)	122, 221, 319, 349, 411, 457, 516, 527, 573
BsiEI	CGRYCG	1 cut(s)	538
BsiHKAI	GWGCWC	1 cut(s)	138
BsiHKCI	CYCGRG	1 cut(s)	406
BsiSI	CCGG	1 cut(s)	517
BslI	CCNNNNNNNGG	4 cut(s)	130, 231, 356, 523
BsnI	GGCC	9 cut(s)	122, 221, 319, 349, 411, 457, 516, 527, 573
BsoBI	CYCGRG	1 cut(s)	406
Bsp120I	GGGCCC	1 cut(s)	120
Bsp1286I	GDGCHC	4 cut(s)	124, 138, 179, 454
Bsp143I	GATC	4 cut(s)	147, 212, 461, 502
Bsp68I	TCGCGA	1 cut(s)	540
BspACI	CCGC	9 cut(s)	102, 118, 125, 295, 302, 368, 383, 396, 421
BspANI	GGCC	9 cut(s)	122, 221, 319, 349, 411, 457, 516, 527, 573
BspCNI	CTCAG	2 cut(s)	150, 552
BspFNI	CGCG	2 cut(s)	368, 540
BspLI	GGNNCC	4 cut(s)	122, 123, 166, 526
BspPI	GGATC	2 cut(s)	207, 469
BsrBI	CCGCTC	1 cut(s)	127
BsrDI	GCAATG	1 cut(s)	574
BsrI	ACTGG	1 cut(s)	435
BssECI	CCNNGG	3 cut(s)	105, 216, 225
BssMI	GATC	4 cut(s)	147, 212, 461, 502
Bst2UI	CCWGG	1 cut(s)	459
Bst4CI	ACNGT	1 cut(s)	536
Bst6I	CTCTTC	1 cut(s)	440
BstC8I	GCNNGC	4 cut(s)	116, 120, 179, 381
BstDEI	CTNAG	3 cut(s)	64, 137, 560
BstDSI	CCRYGG	1 cut(s)	105
BstFNI	CGCG	2 cut(s)	368, 540
BstH2I	RGCGCY	1 cut(s)	23
BstHHI	GCGC	1 cut(s)	22
BstKTI	GATC	4 cut(s)	150, 215, 464, 505
BstMBI	GATC	4 cut(s)	147, 212, 461, 502
BstMCI	CGRYCG	1 cut(s)	538
BstMWI	GCNNNNNNNGC	7 cut(s)	124, 133, 178, 227, 325, 402, 463
BstNI	CCWGG	1 cut(s)	459
BstNSI	RCATGY	1 cut(s)	118
BstSCI	CCNGG	2 cut(s)	457, 516
BstSLI	GKGCMC	1 cut(s)	124
BstUI	CGCG	2 cut(s)	368, 540
BstV1I	GCAGC	4 cut(s)	232, 258, 363, 453
BstX2I	RGATCY	1 cut(s)	212
BstYI	RGATCY	1 cut(s)	212
BsuRI	GGCC	9 cut(s)	122, 221, 319, 349, 411, 457, 516, 527, 573
BtgI	CCRYGG	1 cut(s)	105
BtsI	GCAGTG	1 cut(s)	661
BtsIMutI	CAGTG	1 cut(s)	661
BtuMI	TCGCGA	1 cut(s)	540
Cac8I	GCNNGC	4 cut(s)	116, 120, 179, 381
CfoI	GCGC	1 cut(s)	22
Cfr13I	GGNCC	5 cut(s)	120, 121, 347, 409, 525
CseI	GACGC	1 cut(s)	317
Csp6I	GTAC	1 cut(s)	649
CviAII	CATG	2 cut(s)	115, 401
CviQI	GTAC	1 cut(s)	649
DdeI	CTNAG	3 cut(s)	64, 137, 560
DpnI	GATC	4 cut(s)	149, 214, 463, 504
DpnII	GATC	4 cut(s)	147, 212, 461, 502
DrdI	GACNNNNNNGTC	1 cut(s)	330
DseDI	GACNNNNNNGTC	1 cut(s)	330
EaeI	YGGCCR	2 cut(s)	514, 571
Eam1104I	CTCTTC	1 cut(s)	440
EarI	CTCTTC	1 cut(s)	440
EciI	GGCGGA	2 cut(s)	91, 411
Ecl136II	GAGCTC	1 cut(s)	136
Eco147I	AGGCCT	2 cut(s)	221, 319
Eco24I	GRGCYC	4 cut(s)	124, 138, 179, 454
Eco47III	AGCGCT	1 cut(s)	21
Eco53kI	GAGCTC	1 cut(s)	136
Eco88I	CYCGRG	1 cut(s)	406
EcoICRI	GAGCTC	1 cut(s)	136
EcoO109I	RGGNCCY	1 cut(s)	121
EcoRII	CCWGG	1 cut(s)	457
EcoT38I	GRGCYC	4 cut(s)	124, 138, 179, 454
FaeI	CATG	2 cut(s)	118, 404
FaiI	YATR	2 cut(s)	116, 402
FalI	AAGNNNNNCTT	2 cut(s)	260, 292
FatI	CATG	2 cut(s)	114, 400
FauI	CCCGC	5 cut(s)	111, 132, 288, 295, 361
FblI	GTMKAC	2 cut(s)	90, 565
Fnu4HI	GCNGC	5 cut(s)	246, 272, 377, 422, 467
FriOI	GRGCYC	4 cut(s)	124, 138, 179, 454
Fsp4HI	GCNGC	5 cut(s)	246, 272, 377, 422, 467
FspBI	CTAG	2 cut(s)	231, 321
GlaI	GCGC	1 cut(s)	21
GluI	GCNGC	5 cut(s)	246, 272, 377, 422, 467
GsuI	CTGGAG	2 cut(s)	452, 575
HaeII	RGCGCY	1 cut(s)	23
HaeIII	GGCC	9 cut(s)	122, 221, 319, 349, 411, 457, 516, 527, 573
HapII	CCGG	1 cut(s)	517
HgaI	GACGC	1 cut(s)	317
HhaI	GCGC	1 cut(s)	22
Hin1II	CATG	2 cut(s)	118, 404
Hin6I	GCGC	1 cut(s)	20
HinP1I	GCGC	1 cut(s)	20
HincII	GTYRAC	4 cut(s)	70, 91, 97, 566
HindII	GTYRAC	4 cut(s)	70, 91, 97, 566
HinfI	GANTC	4 cut(s)	98, 360, 562, 567
HpaII	CCGG	1 cut(s)	517
HphI	GGTGA	2 cut(s)	67, 383
Hpy166II	GTNNAC	4 cut(s)	70, 91, 97, 566
Hpy188I	TCNGA	5 cut(s)	161, 217, 226, 336, 479
Hpy188III	TCNNGA	2 cut(s)	506, 539
Hpy8I	GTNNAC	4 cut(s)	70, 91, 97, 566
Hpy99I	CGWCG	5 cut(s)	92, 95, 333, 336, 368
HpyAV	CCTTC	2 cut(s)	603, 611
HpyCH4III	ACNGT	1 cut(s)	536
HpyCH4IV	ACGT	1 cut(s)	93
HpyCH4V	TGCA	2 cut(s)	172, 579
HpyF10VI	GCNNNNNNNGC	7 cut(s)	124, 133, 178, 227, 325, 402, 463
HpyF3I	CTNAG	3 cut(s)	64, 137, 560
HpySE526I	ACGT	1 cut(s)	93
Hsp92II	CATG	2 cut(s)	118, 404
HspAI	GCGC	1 cut(s)	20
Kzo9I	GATC	4 cut(s)	147, 212, 461, 502
LmnI	GCTCC	4 cut(s)	27, 133, 170, 556
Lsp1109I	GCAGC	4 cut(s)	232, 258, 363, 453
MaeI	CTAG	2 cut(s)	231, 321
MaeII	ACGT	1 cut(s)	93
MaeIII	GTNAC	1 cut(s)	13
MalI	GATC	4 cut(s)	149, 214, 463, 504
MbiI	CCGCTC	1 cut(s)	127
MboI	GATC	4 cut(s)	147, 212, 461, 502
MboII	GAAGA	3 cut(s)	157, 264, 457
MfeI	CAATTG	1 cut(s)	6
MflI	RGATCY	1 cut(s)	212
MhlI	GDGCHC	4 cut(s)	124, 138, 179, 454
MluCI	AATT	2 cut(s)	6, 664
MlyI	GAGTC	4 cut(s)	92, 369, 561, 571
MmeI	TCCRAC	1 cut(s)	314
MspI	CCGG	1 cut(s)	517
MspR9I	CCNGG	2 cut(s)	459, 518
MunI	CAATTG	1 cut(s)	6
MvaI	CCWGG	1 cut(s)	459
MvnI	CGCG	2 cut(s)	368, 540
MwoI	GCNNNNNNNGC	7 cut(s)	124, 133, 178, 227, 325, 402, 463
NciI	CCSGG	1 cut(s)	518
NdeII	GATC	4 cut(s)	147, 212, 461, 502
NlaIII	CATG	2 cut(s)	118, 404
NlaIV	GGNNCC	4 cut(s)	122, 123, 166, 526
NmeAIII	GCCGAG	3 cut(s)	433, 549, 553
NmuCI	GTSAC	1 cut(s)	13
NruI	TCGCGA	1 cut(s)	540
NspI	RCATGY	1 cut(s)	118
PaeI	GCATGC	1 cut(s)	118
PceI	AGGCCT	2 cut(s)	221, 319
PcsI	WCGNNNNNNNCGW	1 cut(s)	544
PflFI	GACNNNGTC	2 cut(s)	65, 327
PkrI	GCNGC	5 cut(s)	247, 273, 378, 423, 468
PleI	GAGTC	4 cut(s)	92, 368, 561, 570
PpsI	GAGTC	4 cut(s)	92, 368, 561, 570
Psp124BI	GAGCTC	1 cut(s)	138
Psp6I	CCWGG	1 cut(s)	457
PspGI	CCWGG	1 cut(s)	457
PspN4I	GGNNCC	4 cut(s)	122, 123, 166, 526
PspOMI	GGGCCC	1 cut(s)	120
PspPI	GGNCC	5 cut(s)	120, 121, 347, 409, 525
PsuI	RGATCY	1 cut(s)	212
PsyI	GACNNNGTC	2 cut(s)	65, 327
RruI	TCGCGA	1 cut(s)	540
RsaI	GTAC	1 cut(s)	650
RsaNI	GTAC	1 cut(s)	649
SacI	GAGCTC	1 cut(s)	138
SalI	GTCGAC	2 cut(s)	89, 564
SatI	GCNGC	5 cut(s)	246, 272, 377, 422, 467
Sau3AI	GATC	4 cut(s)	147, 212, 461, 502
Sau96I	GGNCC	5 cut(s)	120, 121, 347, 409, 525
SchI	GAGTC	4 cut(s)	92, 369, 561, 571
ScrFI	CCNGG	2 cut(s)	459, 518
SduI	GDGCHC	4 cut(s)	124, 138, 179, 454
SgrDI	CGTCGACG	1 cut(s)	89
SphI	GCATGC	1 cut(s)	118
Sse9I	AATT	2 cut(s)	6, 664
SseBI	AGGCCT	2 cut(s)	221, 319
SsiI	CCGC	9 cut(s)	102, 118, 125, 295, 302, 368, 383, 396, 421
SspMI	CTAG	2 cut(s)	231, 321
SstI	GAGCTC	1 cut(s)	138
StuI	AGGCCT	2 cut(s)	221, 319
StyD4I	CCNGG	2 cut(s)	457, 516
TaaI	ACNGT	1 cut(s)	536
TaiI	ACGT	1 cut(s)	96
TaqI	TCGA	3 cut(s)	90, 250, 565
TasI	AATT	2 cut(s)	6, 664
TauI	GCSGC	1 cut(s)	424
TscAI	CASTG	1 cut(s)	661
TseFI	GTSAC	1 cut(s)	13
TseI	GCWGC	4 cut(s)	245, 271, 376, 466
Tsp45I	GTSAC	1 cut(s)	13
TspGWI	ACGGA	1 cut(s)	157
TspRI	CASTG	1 cut(s)	661
Tth111I	GACNNNGTC	2 cut(s)	65, 327
XceI	RCATGY	1 cut(s)	118
XmiI	GTMKAC	2 cut(s)	90, 565
XspI	CTAG	2 cut(s)	231, 321

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.