Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0018222

Physical Location & Seq

Genomic Coordinates Reverse (-)

13242307 .. 13242669

Gene Structure 363 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG071600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 363 bp

ATGGCGGATCCAATTCCATCAGCACCGCACAGATCCGACACCAATTTCTTCTCCGACCCCCTCGACTCCGACCCCCTCTGGTTCAAGCCTGCGCTCTTCCTCTCCCCGGACTTCGACTCCGAGGCCTACATCTCCGACCTCCGAACCTTCGTCCCCTTCGACACCCTCCGATCCGAGCTCCAGTCCTATCTCGCCTCCATCAACCACGACCTCATCAACCGCGACTACGCCGCTTCGTCAACCTCAGCACCAAGCTCGTCGACGTCGACTTTGCCGTGGTGCGCATGCGGGCCCCGCTCCTGGAGCTCAGGGAAAAGATCGAGCAGTTCAGAGGCTCCGTGCAGGGCTCGTTTGTGGCGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005795 GO:0005829 GO:0006810 GO:0006891 GO:0006996 GO:0007030 GO:0008104 GO:0008150 GO:0008565 GO:0009987 GO:0010256 GO:0012505 GO:0015031 GO:0015833 GO:0016043 GO:0016192 GO:0017119 GO:0031984 GO:0032991 GO:0033036 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0044877 GO:0045184 GO:0048193 GO:0051179 GO:0051234 GO:0071702 GO:0071705 GO:0071840 GO:0098791 GO:0099023

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

COG2 DUF3510

Protein Analysis

120

Amino Acids

13.34

Weight (kDa)

5.17

Isoelectric Point (pI)

76.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
COG2_N	PF06148	26 - 77	2.5e-12	COG2 N-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018222)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000005879
rosa_multiflora	Rmu_sc0002073.1_g000021 Rmu_sc0002407.1_g000012 Rmu_sc0009827.1_g000006 Rmu_sc0036508.1_g000001
rosa_roxburghii	Rroxscaffold_1G00022180
rosa_samantha	Rh2BG395400 Rh2DG373500 Rh4CG071600 Rh6AG235100 Rh7DG176300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	266
Acc16I	TGCGCA	1 cut(s)	283
AccBSI	CCGCTC	1 cut(s)	297
AccI	GTMKAC	2 cut(s)	260, 266
AccII	CGCG	1 cut(s)	222
AciI	CCGC	6 cut(s)	5, 26, 220, 231, 288, 295
AclWI	GGATC	4 cut(s)	2, 15, 27, 165
AcyI	GRCGYC	1 cut(s)	263
AfiI	CCNNNNNNNGG	2 cut(s)	106, 300
AgsI	TTSAA	1 cut(s)	85
AjnI	CCWGG	1 cut(s)	299
AluBI	AGCT	3 cut(s)	178, 255, 306
AluI	AGCT	3 cut(s)	178, 255, 306
Alw21I	GWGCWC	2 cut(s)	180, 308
AlwI	GGATC	4 cut(s)	2, 15, 27, 165
AoxI	GGCC	2 cut(s)	123, 290
ApaI	GGGCCC	1 cut(s)	294
ArsI	GACNNNNNNTTYG	2 cut(s)	253, 285
AspLEI	GCGC	3 cut(s)	94, 284, 360
AspS9I	GGNCC	2 cut(s)	290, 291
AsuC2I	CCSGG	1 cut(s)	107
BaeGI	GKGCMC	1 cut(s)	294
BamHI	GGATCC	1 cut(s)	7
BanII	GRGCYC	4 cut(s)	180, 294, 308, 349
Bbv12I	GWGCWC	2 cut(s)	180, 308
BbvCI	CCTCAGC	1 cut(s)	244
BccI	CCATC	2 cut(s)	25, 206
BceAI	ACGGC	1 cut(s)	259
BcgI	CGANNNNNNTGC	2 cut(s)	237, 271
BciT130I	CCWGG	1 cut(s)	301
BcnI	CCSGG	1 cut(s)	107
BfoI	RGCGCY	1 cut(s)	361
BisI	GCNGC	1 cut(s)	231
BlsI	GCNGC	1 cut(s)	232
Bme1390I	CCNGG	2 cut(s)	107, 301
BmgT120I	GGNCC	2 cut(s)	290, 291
BmiI	GGNNCC	4 cut(s)	9, 292, 293, 336
BmrFI	CCNGG	2 cut(s)	107, 301
BpmI	CTGGAG	2 cut(s)	164, 322
Bpu10I	CCTNAGC	2 cut(s)	244, 307
BpuMI	CCSGG	1 cut(s)	107
BsaHI	GRCGYC	1 cut(s)	263
BsaJI	CCNNGG	3 cut(s)	105, 120, 275
BsaXI	ACNNNNNCTCC	2 cut(s)	101, 131
Bsc4I	CCNNNNNNNGG	2 cut(s)	106, 300
Bse1I	ACTGG	1 cut(s)	181
BseBI	CCWGG	1 cut(s)	301
BseDI	CCNNGG	3 cut(s)	105, 120, 275
BseLI	CCNNNNNNNGG	2 cut(s)	106, 300
BseMII	CTCAG	2 cut(s)	258, 321
BseNI	ACTGG	1 cut(s)	181
BseSI	GKGCMC	1 cut(s)	294
BsgI	GTGCAG	1 cut(s)	361
Bsh1236I	CGCG	1 cut(s)	222
BshFI	GGCC	2 cut(s)	125, 292
BsiHKAI	GWGCWC	2 cut(s)	180, 308
BsiSI	CCGG	1 cut(s)	107
BslFI	GGGAC	1 cut(s)	137
BslI	CCNNNNNNNGG	2 cut(s)	106, 300
BsmFI	GGGAC	1 cut(s)	137
BsnI	GGCC	2 cut(s)	125, 292
Bsp120I	GGGCCC	1 cut(s)	290
Bsp1286I	GDGCHC	4 cut(s)	180, 294, 308, 349
Bsp143I	GATC	4 cut(s)	7, 32, 170, 317
BspACI	CCGC	6 cut(s)	5, 26, 220, 231, 288, 295
BspANI	GGCC	2 cut(s)	125, 292
BspCNI	CTCAG	2 cut(s)	257, 320
BspFNI	CGCG	1 cut(s)	222
BspLI	GGNNCC	4 cut(s)	9, 292, 293, 336
BspPI	GGATC	4 cut(s)	2, 15, 27, 165
BspQI	GCTCTTC	1 cut(s)	101
BsrBI	CCGCTC	1 cut(s)	297
BsrI	ACTGG	1 cut(s)	181
BssECI	CCNNGG	3 cut(s)	105, 120, 275
BssMI	GATC	4 cut(s)	7, 32, 170, 317
BssNI	GRCGYC	1 cut(s)	263
Bst2UI	CCWGG	1 cut(s)	301
Bst6I	CTCTTC	1 cut(s)	101
BstACI	GRCGYC	1 cut(s)	263
BstC8I	GCNNGC	3 cut(s)	90, 286, 290
BstDEI	CTNAG	2 cut(s)	244, 307
BstDSI	CCRYGG	1 cut(s)	275
BstFNI	CGCG	1 cut(s)	222
BstH2I	RGCGCY	1 cut(s)	361
BstHHI	GCGC	3 cut(s)	94, 284, 360
BstKTI	GATC	4 cut(s)	10, 35, 173, 320
BstMBI	GATC	4 cut(s)	7, 32, 170, 317
BstMWI	GCNNNNNNNGC	2 cut(s)	294, 303
BstNI	CCWGG	1 cut(s)	301
BstNSI	RCATGY	1 cut(s)	288
BstSCI	CCNGG	2 cut(s)	105, 299
BstSLI	GKGCMC	1 cut(s)	294
BstUI	CGCG	1 cut(s)	222
BstX2I	RGATCY	2 cut(s)	7, 32
BstYI	RGATCY	2 cut(s)	7, 32
BsuRI	GGCC	2 cut(s)	125, 292
BtgI	CCRYGG	1 cut(s)	275
Cac8I	GCNNGC	3 cut(s)	90, 286, 290
CfoI	GCGC	3 cut(s)	94, 284, 360
Cfr13I	GGNCC	2 cut(s)	290, 291
CviAII	CATG	1 cut(s)	285
CviJI	RGCY	8 cut(s)	88, 125, 178, 255, 292, 306, 335, 347
CviKI_1	RGCY	8 cut(s)	88, 125, 178, 255, 292, 306, 335, 347
DdeI	CTNAG	2 cut(s)	244, 307
DpnI	GATC	4 cut(s)	9, 34, 172, 319
DpnII	GATC	4 cut(s)	7, 32, 170, 317
Eam1104I	CTCTTC	1 cut(s)	101
EarI	CTCTTC	1 cut(s)	101
EciI	GGCGGA	1 cut(s)	20
Ecl136II	GAGCTC	2 cut(s)	178, 306
Eco147I	AGGCCT	1 cut(s)	125
Eco24I	GRGCYC	4 cut(s)	180, 294, 308, 349
Eco53kI	GAGCTC	2 cut(s)	178, 306
EcoICRI	GAGCTC	2 cut(s)	178, 306
EcoO109I	RGGNCCY	1 cut(s)	291
EcoRII	CCWGG	1 cut(s)	299
EcoT38I	GRGCYC	4 cut(s)	180, 294, 308, 349
FaeI	CATG	1 cut(s)	288
FaiI	YATR	1 cut(s)	286
FaqI	GGGAC	1 cut(s)	137
FatI	CATG	1 cut(s)	284
FauI	CCCGC	2 cut(s)	281, 302
FblI	GTMKAC	2 cut(s)	260, 266
Fnu4HI	GCNGC	1 cut(s)	231
FriOI	GRGCYC	4 cut(s)	180, 294, 308, 349
Fsp4HI	GCNGC	1 cut(s)	231
FspAI	RTGCGCAY	1 cut(s)	283
FspI	TGCGCA	1 cut(s)	283
GlaI	GCGC	3 cut(s)	93, 283, 359
GluI	GCNGC	1 cut(s)	231
GsuI	CTGGAG	2 cut(s)	164, 322
HaeII	RGCGCY	1 cut(s)	361
HaeIII	GGCC	2 cut(s)	125, 292
HapII	CCGG	1 cut(s)	107
HhaI	GCGC	3 cut(s)	94, 284, 360
Hin1I	GRCGYC	1 cut(s)	263
Hin1II	CATG	1 cut(s)	288
Hin6I	GCGC	3 cut(s)	92, 282, 358
HinP1I	GCGC	3 cut(s)	92, 282, 358
HincII	GTYRAC	3 cut(s)	240, 261, 267
HindII	GTYRAC	3 cut(s)	240, 261, 267
HinfI	GANTC	2 cut(s)	65, 116
HpaII	CCGG	1 cut(s)	107
Hpy166II	GTNNAC	3 cut(s)	240, 261, 267
Hpy188I	TCNGA	9 cut(s)	37, 55, 70, 121, 136, 143, 170, 175, 331
Hpy8I	GTNNAC	3 cut(s)	240, 261, 267
Hpy99I	CGWCG	3 cut(s)	262, 265, 268
HpyAV	CCTTC	2 cut(s)	157, 166
HpyCH4IV	ACGT	1 cut(s)	263
HpyCH4V	TGCA	1 cut(s)	342
HpyF10VI	GCNNNNNNNGC	2 cut(s)	294, 303
HpyF3I	CTNAG	2 cut(s)	244, 307
HpySE526I	ACGT	1 cut(s)	263
Hsp92I	GRCGYC	1 cut(s)	263
Hsp92II	CATG	1 cut(s)	288
HspAI	GCGC	3 cut(s)	92, 282, 358
Kzo9I	GATC	4 cut(s)	7, 32, 170, 317
LguI	GCTCTTC	1 cut(s)	101
LmnI	GCTCC	4 cut(s)	183, 302, 303, 340
LpnPI	CCDG	8 cut(s)	64, 102, 120, 194, 286, 294, 313, 328
MaeII	ACGT	1 cut(s)	263
MalI	GATC	4 cut(s)	9, 34, 172, 319
MbiI	CCGCTC	1 cut(s)	297
MboI	GATC	4 cut(s)	7, 32, 170, 317
MboII	GAAGA	2 cut(s)	40, 88
MflI	RGATCY	2 cut(s)	7, 32
MhlI	GDGCHC	4 cut(s)	180, 294, 308, 349
MluCI	AATT	2 cut(s)	12, 43
MlyI	GAGTC	2 cut(s)	59, 110
MmeI	TCCRAC	4 cut(s)	60, 78, 93, 159
MspI	CCGG	1 cut(s)	107
MspR9I	CCNGG	2 cut(s)	107, 301
MvaI	CCWGG	1 cut(s)	301
MvnI	CGCG	1 cut(s)	222
MwoI	GCNNNNNNNGC	2 cut(s)	294, 303
NciI	CCSGG	1 cut(s)	107
NdeII	GATC	4 cut(s)	7, 32, 170, 317
NlaIII	CATG	1 cut(s)	288
NlaIV	GGNNCC	4 cut(s)	9, 292, 293, 336
NsbI	TGCGCA	1 cut(s)	283
NspI	RCATGY	1 cut(s)	288
PaeI	GCATGC	1 cut(s)	288
PceI	AGGCCT	1 cut(s)	125
PciSI	GCTCTTC	1 cut(s)	101
PcsI	WCGNNNNNNNCGW	3 cut(s)	156, 263, 272
PfoI	TCCNGGA	1 cut(s)	299
PkrI	GCNGC	1 cut(s)	232
PleI	GAGTC	2 cut(s)	59, 110
PpsI	GAGTC	2 cut(s)	59, 110
Psp124BI	GAGCTC	2 cut(s)	180, 308
Psp6I	CCWGG	1 cut(s)	299
PspGI	CCWGG	1 cut(s)	299
PspN4I	GGNNCC	4 cut(s)	9, 292, 293, 336
PspOMI	GGGCCC	1 cut(s)	290
PspPI	GGNCC	2 cut(s)	290, 291
PsuI	RGATCY	2 cut(s)	7, 32
SacI	GAGCTC	2 cut(s)	180, 308
SalI	GTCGAC	2 cut(s)	259, 265
SapI	GCTCTTC	1 cut(s)	101
SatI	GCNGC	1 cut(s)	231
Sau3AI	GATC	4 cut(s)	7, 32, 170, 317
Sau96I	GGNCC	2 cut(s)	290, 291
SchI	GAGTC	2 cut(s)	59, 110
ScrFI	CCNGG	2 cut(s)	107, 301
SduI	GDGCHC	4 cut(s)	180, 294, 308, 349
SetI	ASST	8 cut(s)	141, 149, 180, 213, 245, 257, 266, 308
SgrDI	CGTCGACG	1 cut(s)	259
SphI	GCATGC	1 cut(s)	288
Sse9I	AATT	2 cut(s)	12, 43
SseBI	AGGCCT	1 cut(s)	125
SsiI	CCGC	6 cut(s)	5, 26, 220, 231, 288, 295
SstI	GAGCTC	2 cut(s)	180, 308
StuI	AGGCCT	1 cut(s)	125
StyD4I	CCNGG	2 cut(s)	105, 299
TaiI	ACGT	1 cut(s)	266
TaqI	TCGA	6 cut(s)	63, 114, 159, 260, 266, 320
TasI	AATT	2 cut(s)	12, 43
TauI	GCSGC	1 cut(s)	233
TspGWI	ACGGA	1 cut(s)	327
XceI	RCATGY	1 cut(s)	288
XmiI	GTMKAC	2 cut(s)	260, 266
ZraI	GACGTC	1 cut(s)	264

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.