Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0036508.1

Orthogroup ID

OG0018222

Physical Location & Seq

Genomic Coordinates Reverse (-)

335 .. 1087

Gene Structure 753 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0036508.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 513 bp

atgcttaaagctaggcctggcaacgtgcggatccgacaccaatttcttctccgaccccctcgactcccaccccctctggttcaagcctgcgctcttcctctccccggactccgactccgaggcctacatctccgacctccgaaccttcgtccccttcgacaccctccgatccgggctccagtcctatctcgcctccctcaaccacgacctcatcaaccgcgactatgccgcttcgtcaacctcagcaccaagctcgtcgacgtcgactttgccgtggtgcgcatgcgggccccgctcctggagctcagggaaaagatcgagcagttcagaggctccgtgcagggttcgcttgtggcgctgaccaatggattgaagcagagatccgaggtcgccaaggctagggagatggaggctgctcgaagctggttttgggtttggaggctgctcgaagaaaagagagatggaggctgctcttggttgccggaagagaggaaaataagaaatgagttttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005795 GO:0005829 GO:0006810 GO:0006891 GO:0006996 GO:0007030 GO:0008104 GO:0008150 GO:0008565 GO:0009987 GO:0010256 GO:0012505 GO:0015031 GO:0015833 GO:0016043 GO:0016192 GO:0017119 GO:0031984 GO:0032991 GO:0033036 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0044877 GO:0045184 GO:0048193 GO:0051179 GO:0051234 GO:0071702 GO:0071705 GO:0071840 GO:0098791 GO:0099023

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

COG2 DUF3510

Protein Analysis

170

Amino Acids

19.78

Weight (kDa)

11.66

Isoelectric Point (pI)

56.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018222)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000005879
rosa_multiflora	Rmu_sc0002073.1_g000021 Rmu_sc0002407.1_g000012 Rmu_sc0009827.1_g000006 Rmu_sc0036508.1_g000001
rosa_roxburghii	Rroxscaffold_1G00022180
rosa_samantha	Rh2BG395400 Rh2DG373500 Rh4CG071600 Rh6AG235100 Rh7DG176300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	264
Acc16I	TGCGCA	1 cut(s)	281
AccBSI	CCGCTC	1 cut(s)	295
AccI	GTMKAC	2 cut(s)	258, 264
AccII	CGCG	1 cut(s)	220
AciI	CCGC	5 cut(s)	28, 218, 229, 286, 293
AclWI	GGATC	4 cut(s)	25, 38, 163, 375
AcyI	GRCGYC	1 cut(s)	261
AfiI	CCNNNNNNNGG	3 cut(s)	104, 298, 399
AgsI	TTSAA	2 cut(s)	83, 373
AjnI	CCWGG	2 cut(s)	16, 297
AjuI	GAANNNNNNNTTGG	2 cut(s)	412, 444
AluBI	AGCT	4 cut(s)	11, 253, 304, 423
AluI	AGCT	4 cut(s)	11, 253, 304, 423
Alw21I	GWGCWC	1 cut(s)	306
AlwI	GGATC	4 cut(s)	25, 38, 163, 375
AoxI	GGCC	3 cut(s)	14, 121, 288
ApaI	GGGCCC	1 cut(s)	292
ApeKI	GCWGC	3 cut(s)	413, 442, 468
ArsI	GACNNNNNNTTYG	2 cut(s)	251, 283
AspLEI	GCGC	3 cut(s)	92, 282, 358
AspS9I	GGNCC	2 cut(s)	288, 289
AsuC2I	CCSGG	2 cut(s)	105, 173
BaeGI	GKGCMC	1 cut(s)	292
BamHI	GGATCC	1 cut(s)	30
BanII	GRGCYC	3 cut(s)	178, 292, 306
Bbv12I	GWGCWC	1 cut(s)	306
BbvCI	CCTCAGC	1 cut(s)	242
BbvI	GCAGC	3 cut(s)	400, 429, 455
BccI	CCATC	2 cut(s)	400, 455
BceAI	ACGGC	1 cut(s)	257
BcgI	CGANNNNNNTGC	2 cut(s)	235, 269
BciT130I	CCWGG	2 cut(s)	18, 299
BcnI	CCSGG	2 cut(s)	105, 173
BfaI	CTAG	2 cut(s)	12, 399
BfoI	RGCGCY	1 cut(s)	359
BisI	GCNGC	4 cut(s)	229, 414, 443, 469
BlsI	GCNGC	4 cut(s)	230, 415, 444, 470
Bme1390I	CCNGG	4 cut(s)	18, 105, 173, 299
BmgT120I	GGNCC	2 cut(s)	288, 289
BmiI	GGNNCC	5 cut(s)	32, 177, 290, 291, 334
BmrFI	CCNGG	4 cut(s)	18, 105, 173, 299
BpmI	CTGGAG	2 cut(s)	162, 320
Bpu10I	CCTNAGC	2 cut(s)	242, 305
BpuMI	CCSGG	2 cut(s)	105, 173
BsaHI	GRCGYC	1 cut(s)	261
BsaJI	CCNNGG	5 cut(s)	103, 118, 273, 384, 393
BsaXI	ACNNNNNCTCC	2 cut(s)	99, 129
Bsc4I	CCNNNNNNNGG	3 cut(s)	104, 298, 399
Bse1I	ACTGG	1 cut(s)	179
BseBI	CCWGG	2 cut(s)	18, 299
BseDI	CCNNGG	5 cut(s)	103, 118, 273, 384, 393
BseLI	CCNNNNNNNGG	3 cut(s)	104, 298, 399
BseMII	CTCAG	2 cut(s)	256, 319
BseNI	ACTGG	1 cut(s)	179
BseSI	GKGCMC	1 cut(s)	292
BseXI	GCAGC	3 cut(s)	400, 429, 455
BsgI	GTGCAG	1 cut(s)	359
Bsh1236I	CGCG	1 cut(s)	220
BshFI	GGCC	3 cut(s)	16, 123, 290
BsiHKAI	GWGCWC	1 cut(s)	306
BsiSI	CCGG	3 cut(s)	105, 172, 482
BslFI	GGGAC	1 cut(s)	135
BslI	CCNNNNNNNGG	3 cut(s)	104, 298, 399
BsmFI	GGGAC	1 cut(s)	135
BsnI	GGCC	3 cut(s)	16, 123, 290
Bsp120I	GGGCCC	1 cut(s)	288
Bsp1286I	GDGCHC	3 cut(s)	178, 292, 306
Bsp143I	GATC	4 cut(s)	30, 168, 315, 380
BspACI	CCGC	5 cut(s)	28, 218, 229, 286, 293
BspANI	GGCC	3 cut(s)	16, 123, 290
BspCNI	CTCAG	2 cut(s)	255, 318
BspFNI	CGCG	1 cut(s)	220
BspLI	GGNNCC	5 cut(s)	32, 177, 290, 291, 334
BspPI	GGATC	4 cut(s)	25, 38, 163, 375
BspQI	GCTCTTC	1 cut(s)	99
BsrBI	CCGCTC	1 cut(s)	295
BsrI	ACTGG	1 cut(s)	179
BssECI	CCNNGG	5 cut(s)	103, 118, 273, 384, 393
BssMI	GATC	4 cut(s)	30, 168, 315, 380
BssNI	GRCGYC	1 cut(s)	261
BssT1I	CCWWGG	1 cut(s)	393
Bst2UI	CCWGG	2 cut(s)	18, 299
Bst6I	CTCTTC	2 cut(s)	99, 480
BstACI	GRCGYC	1 cut(s)	261
BstC8I	GCNNGC	3 cut(s)	88, 284, 288
BstDEI	CTNAG	2 cut(s)	242, 305
BstDSI	CCRYGG	1 cut(s)	273
BstFNI	CGCG	1 cut(s)	220
BstH2I	RGCGCY	1 cut(s)	359
BstHHI	GCGC	3 cut(s)	92, 282, 358
BstKTI	GATC	4 cut(s)	33, 171, 318, 383
BstMBI	GATC	4 cut(s)	30, 168, 315, 380
BstMWI	GCNNNNNNNGC	4 cut(s)	292, 301, 346, 355
BstNI	CCWGG	2 cut(s)	18, 299
BstNSI	RCATGY	1 cut(s)	286
BstSCI	CCNGG	4 cut(s)	16, 103, 171, 297
BstSLI	GKGCMC	1 cut(s)	292
BstUI	CGCG	1 cut(s)	220
BstV1I	GCAGC	3 cut(s)	400, 429, 455
BstX2I	RGATCY	2 cut(s)	30, 380
BstYI	RGATCY	2 cut(s)	30, 380
BsuRI	GGCC	3 cut(s)	16, 123, 290
BtgI	CCRYGG	1 cut(s)	273
Cac8I	GCNNGC	3 cut(s)	88, 284, 288
CfoI	GCGC	3 cut(s)	92, 282, 358
Cfr13I	GGNCC	2 cut(s)	288, 289
CviAII	CATG	1 cut(s)	283
DdeI	CTNAG	2 cut(s)	242, 305
DpnI	GATC	4 cut(s)	32, 170, 317, 382
DpnII	GATC	4 cut(s)	30, 168, 315, 380
Eam1104I	CTCTTC	2 cut(s)	99, 480
EarI	CTCTTC	2 cut(s)	99, 480
Ecl136II	GAGCTC	1 cut(s)	304
Eco130I	CCWWGG	1 cut(s)	393
Eco147I	AGGCCT	2 cut(s)	16, 123
Eco24I	GRGCYC	3 cut(s)	178, 292, 306
Eco53kI	GAGCTC	1 cut(s)	304
EcoICRI	GAGCTC	1 cut(s)	304
EcoO109I	RGGNCCY	1 cut(s)	289
EcoRII	CCWGG	2 cut(s)	16, 297
EcoT14I	CCWWGG	1 cut(s)	393
EcoT38I	GRGCYC	3 cut(s)	178, 292, 306
ErhI	CCWWGG	1 cut(s)	393
FaeI	CATG	1 cut(s)	286
FaiI	YATR	2 cut(s)	226, 284
FaqI	GGGAC	1 cut(s)	135
FatI	CATG	1 cut(s)	282
FauI	CCCGC	2 cut(s)	279, 300
FblI	GTMKAC	2 cut(s)	258, 264
Fnu4HI	GCNGC	4 cut(s)	229, 414, 443, 469
FriOI	GRGCYC	3 cut(s)	178, 292, 306
Fsp4HI	GCNGC	4 cut(s)	229, 414, 443, 469
FspAI	RTGCGCAY	1 cut(s)	281
FspBI	CTAG	2 cut(s)	12, 399
FspI	TGCGCA	1 cut(s)	281
GlaI	GCGC	3 cut(s)	91, 281, 357
GluI	GCNGC	4 cut(s)	229, 414, 443, 469
GsuI	CTGGAG	2 cut(s)	162, 320
HaeII	RGCGCY	1 cut(s)	359
HaeIII	GGCC	3 cut(s)	16, 123, 290
HapII	CCGG	3 cut(s)	105, 172, 482
HhaI	GCGC	3 cut(s)	92, 282, 358
Hin1I	GRCGYC	1 cut(s)	261
Hin1II	CATG	1 cut(s)	286
Hin6I	GCGC	3 cut(s)	90, 280, 356
HinP1I	GCGC	3 cut(s)	90, 280, 356
HincII	GTYRAC	3 cut(s)	238, 259, 265
HindII	GTYRAC	3 cut(s)	238, 259, 265
HinfI	GANTC	3 cut(s)	63, 108, 114
HpaII	CCGG	3 cut(s)	105, 172, 482
Hpy166II	GTNNAC	3 cut(s)	238, 259, 265
Hpy188I	TCNGA	9 cut(s)	35, 53, 113, 119, 134, 141, 168, 329, 385
Hpy8I	GTNNAC	3 cut(s)	238, 259, 265
Hpy99I	CGWCG	3 cut(s)	260, 263, 266
HpyAV	CCTTC	2 cut(s)	155, 164
HpyCH4IV	ACGT	2 cut(s)	24, 261
HpyCH4V	TGCA	1 cut(s)	340
HpyF10VI	GCNNNNNNNGC	4 cut(s)	292, 301, 346, 355
HpyF3I	CTNAG	2 cut(s)	242, 305
HpySE526I	ACGT	2 cut(s)	24, 261
Hsp92I	GRCGYC	1 cut(s)	261
Hsp92II	CATG	1 cut(s)	286
HspAI	GCGC	3 cut(s)	90, 280, 356
Kzo9I	GATC	4 cut(s)	30, 168, 315, 380
LguI	GCTCTTC	1 cut(s)	99
LmnI	GCTCC	4 cut(s)	181, 300, 301, 338
Lsp1109I	GCAGC	3 cut(s)	400, 429, 455
MaeI	CTAG	2 cut(s)	12, 399
MaeII	ACGT	2 cut(s)	24, 261
MalI	GATC	4 cut(s)	32, 170, 317, 382
MbiI	CCGCTC	1 cut(s)	295
MboI	GATC	4 cut(s)	30, 168, 315, 380
MboII	GAAGA	4 cut(s)	38, 86, 461, 497
MflI	RGATCY	2 cut(s)	30, 380
MhlI	GDGCHC	3 cut(s)	178, 292, 306
MluCI	AATT	1 cut(s)	41
MlyI	GAGTC	3 cut(s)	57, 102, 108
MmeI	TCCRAC	4 cut(s)	58, 76, 136, 157
MseI	TTAA	1 cut(s)	6
MspI	CCGG	3 cut(s)	105, 172, 482
MspR9I	CCNGG	4 cut(s)	18, 105, 173, 299
MvaI	CCWGG	2 cut(s)	18, 299
MvnI	CGCG	1 cut(s)	220
MwoI	GCNNNNNNNGC	4 cut(s)	292, 301, 346, 355
NciI	CCSGG	2 cut(s)	105, 173
NdeII	GATC	4 cut(s)	30, 168, 315, 380
NlaIII	CATG	1 cut(s)	286
NlaIV	GGNNCC	5 cut(s)	32, 177, 290, 291, 334
NsbI	TGCGCA	1 cut(s)	281
NspI	RCATGY	1 cut(s)	286
PaeI	GCATGC	1 cut(s)	286
PceI	AGGCCT	2 cut(s)	16, 123
PciSI	GCTCTTC	1 cut(s)	99
PcsI	WCGNNNNNNNCGW	3 cut(s)	154, 261, 270
PfoI	TCCNGGA	1 cut(s)	297
PkrI	GCNGC	4 cut(s)	230, 415, 444, 470
PleI	GAGTC	3 cut(s)	57, 102, 108
PpsI	GAGTC	3 cut(s)	57, 102, 108
Psp124BI	GAGCTC	1 cut(s)	306
Psp6I	CCWGG	2 cut(s)	16, 297
PspGI	CCWGG	2 cut(s)	16, 297
PspN4I	GGNNCC	5 cut(s)	32, 177, 290, 291, 334
PspOMI	GGGCCC	1 cut(s)	288
PspPI	GGNCC	2 cut(s)	288, 289
PsuI	RGATCY	2 cut(s)	30, 380
SacI	GAGCTC	1 cut(s)	306
SalI	GTCGAC	2 cut(s)	257, 263
SapI	GCTCTTC	1 cut(s)	99
SaqAI	TTAA	1 cut(s)	6
SatI	GCNGC	4 cut(s)	229, 414, 443, 469
Sau3AI	GATC	4 cut(s)	30, 168, 315, 380
Sau96I	GGNCC	2 cut(s)	288, 289
SchI	GAGTC	3 cut(s)	57, 102, 108
ScrFI	CCNGG	4 cut(s)	18, 105, 173, 299
SduI	GDGCHC	3 cut(s)	178, 292, 306
SgrDI	CGTCGACG	1 cut(s)	257
SphI	GCATGC	1 cut(s)	286
Sse9I	AATT	1 cut(s)	41
SseBI	AGGCCT	2 cut(s)	16, 123
SsiI	CCGC	5 cut(s)	28, 218, 229, 286, 293
SspMI	CTAG	2 cut(s)	12, 399
SstI	GAGCTC	1 cut(s)	306
StuI	AGGCCT	2 cut(s)	16, 123
StyD4I	CCNGG	4 cut(s)	16, 103, 171, 297
StyI	CCWWGG	1 cut(s)	393
TaiI	ACGT	2 cut(s)	27, 264
TaqI	TCGA	7 cut(s)	61, 157, 258, 264, 318, 418, 447
TasI	AATT	1 cut(s)	41
TauI	GCSGC	1 cut(s)	231
Tru1I	TTAA	1 cut(s)	6
Tru9I	TTAA	1 cut(s)	6
TseI	GCWGC	3 cut(s)	413, 442, 468
TspGWI	ACGGA	1 cut(s)	325
XceI	RCATGY	1 cut(s)	286
XmiI	GTMKAC	2 cut(s)	258, 264
XspI	CTAG	2 cut(s)	12, 399
ZraI	GACGTC	1 cut(s)	262

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.