Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0018222

Physical Location & Seq

Genomic Coordinates Forward (+)

53127443 .. 53143992

Gene Structure 16550 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG373500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 375 bp

ATGGCGGATCCAATTCCATCAGCACCGCACAGATCCGACACCAATTTCTTCTCCGACCCCCTCGACTCCCACCCCCTCTGGCTCAAGCCTGCGCTCTTCCTCTCCCCGGACTTCGACTCCGAGGCCTACATCTCCGACCTCCGGACCTTCGTCCCCTTCGACACCCTCCGATCCGAGCTCCAGTCCTATCTCGCCTCCATCAACCACGACCTCATCAACCGCGTCGTCAACCTCAGCACCAAGCTCGTCGACGTCGACTTTGCCGTGGTGCGCATGCGGGCCCCGCTCCTGGAGCTCAGGGAAAAGATCGAGCAGTTCAGAGGCTCCGTGCAGGGCTCGATGTGCAAATCAGTCTTGGCCCTGACGGTGAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005795 GO:0005829 GO:0006810 GO:0006891 GO:0006996 GO:0007030 GO:0008104 GO:0008150 GO:0008565 GO:0009987 GO:0010256 GO:0012505 GO:0015031 GO:0015833 GO:0016043 GO:0016192 GO:0017119 GO:0031984 GO:0032991 GO:0033036 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0044877 GO:0045184 GO:0048193 GO:0051179 GO:0051234 GO:0071702 GO:0071705 GO:0071840 GO:0098791 GO:0099023

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

COG2 DUF3510

Protein Analysis

124

Amino Acids

13.98

Weight (kDa)

5.22

Isoelectric Point (pI)

44.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
COG2_N	PF06148	26 - 93	1e-12	COG2 N-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018222)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000005879
rosa_multiflora	Rmu_sc0002073.1_g000021 Rmu_sc0002407.1_g000012 Rmu_sc0009827.1_g000006 Rmu_sc0036508.1_g000001
rosa_roxburghii	Rroxscaffold_1G00022180
rosa_samantha	Rh2BG395400 Rh2DG373500 Rh4CG071600 Rh6AG235100 Rh7DG176300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	255
Acc16I	TGCGCA	1 cut(s)	272
AccBSI	CCGCTC	1 cut(s)	286
AccI	GTMKAC	2 cut(s)	249, 255
AccII	CGCG	1 cut(s)	222
AccIII	TCCGGA	1 cut(s)	141
AciI	CCGC	5 cut(s)	5, 26, 220, 277, 284
AclWI	GGATC	4 cut(s)	2, 15, 27, 165
AcyI	GRCGYC	1 cut(s)	252
AfiI	CCNNNNNNNGG	3 cut(s)	106, 141, 289
AjnI	CCWGG	1 cut(s)	288
AluBI	AGCT	4 cut(s)	178, 244, 295, 372
AluI	AGCT	4 cut(s)	178, 244, 295, 372
Alw21I	GWGCWC	2 cut(s)	180, 297
AlwI	GGATC	4 cut(s)	2, 15, 27, 165
Aor13HI	TCCGGA	1 cut(s)	141
AoxI	GGCC	3 cut(s)	123, 279, 357
ApaI	GGGCCC	1 cut(s)	283
ArsI	GACNNNNNNTTYG	2 cut(s)	242, 274
AspLEI	GCGC	2 cut(s)	94, 273
AspS9I	GGNCC	4 cut(s)	144, 279, 280, 358
AsuC2I	CCSGG	1 cut(s)	107
AvaII	GGWCC	1 cut(s)	144
BaeGI	GKGCMC	1 cut(s)	283
BamHI	GGATCC	1 cut(s)	7
BanII	GRGCYC	4 cut(s)	180, 283, 297, 338
Bbv12I	GWGCWC	2 cut(s)	180, 297
BbvCI	CCTCAGC	1 cut(s)	233
BccI	CCATC	2 cut(s)	25, 206
BceAI	ACGGC	1 cut(s)	248
BcgI	CGANNNNNNTGC	2 cut(s)	226, 260
BciT130I	CCWGG	1 cut(s)	290
BcnI	CCSGG	1 cut(s)	107
Bme1390I	CCNGG	2 cut(s)	107, 290
Bme18I	GGWCC	1 cut(s)	144
BmgT120I	GGNCC	4 cut(s)	144, 279, 280, 358
BmiI	GGNNCC	4 cut(s)	9, 281, 282, 325
BmrFI	CCNGG	2 cut(s)	107, 290
BoxI	GACNNNNGTC	1 cut(s)	149
BpmI	CTGGAG	2 cut(s)	164, 311
Bpu10I	CCTNAGC	2 cut(s)	233, 296
BpuEI	CTTGAG	1 cut(s)	68
BpuMI	CCSGG	1 cut(s)	107
BsaHI	GRCGYC	1 cut(s)	252
BsaJI	CCNNGG	3 cut(s)	105, 120, 264
BsaWI	WCCGGW	1 cut(s)	141
BsaXI	ACNNNNNCTCC	2 cut(s)	101, 131
Bsc4I	CCNNNNNNNGG	3 cut(s)	106, 141, 289
Bse1I	ACTGG	1 cut(s)	181
BseAI	TCCGGA	1 cut(s)	141
BseBI	CCWGG	1 cut(s)	290
BseDI	CCNNGG	3 cut(s)	105, 120, 264
BseLI	CCNNNNNNNGG	3 cut(s)	106, 141, 289
BseMII	CTCAG	2 cut(s)	247, 310
BseNI	ACTGG	1 cut(s)	181
BseSI	GKGCMC	1 cut(s)	283
BsgI	GTGCAG	1 cut(s)	350
Bsh1236I	CGCG	1 cut(s)	222
BshFI	GGCC	3 cut(s)	125, 281, 359
BsiHKAI	GWGCWC	2 cut(s)	180, 297
BsiSI	CCGG	2 cut(s)	107, 142
BslFI	GGGAC	1 cut(s)	137
BslI	CCNNNNNNNGG	3 cut(s)	106, 141, 289
BsmFI	GGGAC	1 cut(s)	137
BsnI	GGCC	3 cut(s)	125, 281, 359
Bsp120I	GGGCCC	1 cut(s)	279
Bsp1286I	GDGCHC	4 cut(s)	180, 283, 297, 338
Bsp13I	TCCGGA	1 cut(s)	141
Bsp143I	GATC	4 cut(s)	7, 32, 170, 306
BspACI	CCGC	5 cut(s)	5, 26, 220, 277, 284
BspANI	GGCC	3 cut(s)	125, 281, 359
BspCNI	CTCAG	2 cut(s)	246, 309
BspEI	TCCGGA	1 cut(s)	141
BspFNI	CGCG	1 cut(s)	222
BspLI	GGNNCC	4 cut(s)	9, 281, 282, 325
BspPI	GGATC	4 cut(s)	2, 15, 27, 165
BspQI	GCTCTTC	1 cut(s)	101
BsrBI	CCGCTC	1 cut(s)	286
BsrI	ACTGG	1 cut(s)	181
BssECI	CCNNGG	3 cut(s)	105, 120, 264
BssMI	GATC	4 cut(s)	7, 32, 170, 306
BssNI	GRCGYC	1 cut(s)	252
Bst2UI	CCWGG	1 cut(s)	290
Bst4CI	ACNGT	1 cut(s)	367
Bst6I	CTCTTC	1 cut(s)	101
BstACI	GRCGYC	1 cut(s)	252
BstC8I	GCNNGC	3 cut(s)	90, 275, 279
BstDEI	CTNAG	2 cut(s)	233, 296
BstDSI	CCRYGG	1 cut(s)	264
BstFNI	CGCG	1 cut(s)	222
BstHHI	GCGC	2 cut(s)	94, 273
BstKTI	GATC	4 cut(s)	10, 35, 173, 309
BstMBI	GATC	4 cut(s)	7, 32, 170, 306
BstMWI	GCNNNNNNNGC	3 cut(s)	283, 292, 342
BstNI	CCWGG	1 cut(s)	290
BstNSI	RCATGY	1 cut(s)	277
BstPAI	GACNNNNGTC	1 cut(s)	149
BstSCI	CCNGG	2 cut(s)	105, 288
BstSLI	GKGCMC	1 cut(s)	283
BstUI	CGCG	1 cut(s)	222
BstX2I	RGATCY	2 cut(s)	7, 32
BstYI	RGATCY	2 cut(s)	7, 32
BsuRI	GGCC	3 cut(s)	125, 281, 359
BtgI	CCRYGG	1 cut(s)	264
Cac8I	GCNNGC	3 cut(s)	90, 275, 279
CfoI	GCGC	2 cut(s)	94, 273
Cfr13I	GGNCC	4 cut(s)	144, 279, 280, 358
CseI	GACGC	1 cut(s)	211
CviAII	CATG	1 cut(s)	274
DdeI	CTNAG	2 cut(s)	233, 296
DpnI	GATC	4 cut(s)	9, 34, 172, 308
DpnII	GATC	4 cut(s)	7, 32, 170, 306
Eam1104I	CTCTTC	1 cut(s)	101
EarI	CTCTTC	1 cut(s)	101
EciI	GGCGGA	1 cut(s)	20
Ecl136II	GAGCTC	2 cut(s)	178, 295
Eco147I	AGGCCT	1 cut(s)	125
Eco24I	GRGCYC	4 cut(s)	180, 283, 297, 338
Eco47I	GGWCC	1 cut(s)	144
Eco53kI	GAGCTC	2 cut(s)	178, 295
EcoICRI	GAGCTC	2 cut(s)	178, 295
EcoO109I	RGGNCCY	1 cut(s)	280
EcoRII	CCWGG	1 cut(s)	288
EcoT38I	GRGCYC	4 cut(s)	180, 283, 297, 338
FaeI	CATG	1 cut(s)	277
FaiI	YATR	1 cut(s)	275
FaqI	GGGAC	1 cut(s)	137
FatI	CATG	1 cut(s)	273
FauI	CCCGC	2 cut(s)	270, 291
FblI	GTMKAC	2 cut(s)	249, 255
FriOI	GRGCYC	4 cut(s)	180, 283, 297, 338
FspAI	RTGCGCAY	1 cut(s)	272
FspI	TGCGCA	1 cut(s)	272
GlaI	GCGC	2 cut(s)	93, 272
GsuI	CTGGAG	2 cut(s)	164, 311
HaeIII	GGCC	3 cut(s)	125, 281, 359
HapII	CCGG	2 cut(s)	107, 142
HgaI	GACGC	1 cut(s)	211
HhaI	GCGC	2 cut(s)	94, 273
Hin1I	GRCGYC	1 cut(s)	252
Hin1II	CATG	1 cut(s)	277
Hin6I	GCGC	2 cut(s)	92, 271
HinP1I	GCGC	2 cut(s)	92, 271
HincII	GTYRAC	3 cut(s)	229, 250, 256
HindII	GTYRAC	3 cut(s)	229, 250, 256
HinfI	GANTC	2 cut(s)	65, 116
HpaII	CCGG	2 cut(s)	107, 142
Hpy166II	GTNNAC	3 cut(s)	229, 250, 256
Hpy188I	TCNGA	7 cut(s)	37, 55, 121, 136, 170, 175, 320
Hpy188III	TCNNGA	1 cut(s)	142
Hpy8I	GTNNAC	3 cut(s)	229, 250, 256
Hpy99I	CGWCG	4 cut(s)	227, 251, 254, 257
HpyAV	CCTTC	2 cut(s)	157, 166
HpyCH4III	ACNGT	1 cut(s)	367
HpyCH4IV	ACGT	1 cut(s)	252
HpyCH4V	TGCA	2 cut(s)	331, 345
HpyF10VI	GCNNNNNNNGC	3 cut(s)	283, 292, 342
HpyF3I	CTNAG	2 cut(s)	233, 296
HpySE526I	ACGT	1 cut(s)	252
Hsp92I	GRCGYC	1 cut(s)	252
Hsp92II	CATG	1 cut(s)	277
HspAI	GCGC	2 cut(s)	92, 271
Kpn2I	TCCGGA	1 cut(s)	141
Kzo9I	GATC	4 cut(s)	7, 32, 170, 306
LguI	GCTCTTC	1 cut(s)	101
LmnI	GCTCC	4 cut(s)	183, 291, 292, 329
LpnPI	CCDG	9 cut(s)	64, 102, 120, 155, 194, 275, 283, 302, 317
MaeII	ACGT	1 cut(s)	252
MalI	GATC	4 cut(s)	9, 34, 172, 308
MbiI	CCGCTC	1 cut(s)	286
MboI	GATC	4 cut(s)	7, 32, 170, 306
MboII	GAAGA	2 cut(s)	40, 88
MflI	RGATCY	2 cut(s)	7, 32
MhlI	GDGCHC	4 cut(s)	180, 283, 297, 338
MluCI	AATT	2 cut(s)	12, 43
MlyI	GAGTC	2 cut(s)	59, 110
MmeI	TCCRAC	3 cut(s)	60, 78, 159
MroI	TCCGGA	1 cut(s)	141
MspI	CCGG	2 cut(s)	107, 142
MspR9I	CCNGG	2 cut(s)	107, 290
MvaI	CCWGG	1 cut(s)	290
MvnI	CGCG	1 cut(s)	222
MwoI	GCNNNNNNNGC	3 cut(s)	283, 292, 342
NciI	CCSGG	1 cut(s)	107
NdeII	GATC	4 cut(s)	7, 32, 170, 306
NlaIII	CATG	1 cut(s)	277
NlaIV	GGNNCC	4 cut(s)	9, 281, 282, 325
NsbI	TGCGCA	1 cut(s)	272
NspI	RCATGY	1 cut(s)	277
PaeI	GCATGC	1 cut(s)	277
PceI	AGGCCT	1 cut(s)	125
PciSI	GCTCTTC	1 cut(s)	101
PcsI	WCGNNNNNNNCGW	3 cut(s)	156, 252, 261
PfoI	TCCNGGA	1 cut(s)	288
PleI	GAGTC	2 cut(s)	59, 110
PpsI	GAGTC	2 cut(s)	59, 110
PshAI	GACNNNNGTC	1 cut(s)	149
Psp124BI	GAGCTC	2 cut(s)	180, 297
Psp6I	CCWGG	1 cut(s)	288
PspGI	CCWGG	1 cut(s)	288
PspN4I	GGNNCC	4 cut(s)	9, 281, 282, 325
PspOMI	GGGCCC	1 cut(s)	279
PspPI	GGNCC	4 cut(s)	144, 279, 280, 358
PsuI	RGATCY	2 cut(s)	7, 32
SacI	GAGCTC	2 cut(s)	180, 297
SalI	GTCGAC	2 cut(s)	248, 254
SapI	GCTCTTC	1 cut(s)	101
Sau3AI	GATC	4 cut(s)	7, 32, 170, 306
Sau96I	GGNCC	4 cut(s)	144, 279, 280, 358
SchI	GAGTC	2 cut(s)	59, 110
ScrFI	CCNGG	2 cut(s)	107, 290
SduI	GDGCHC	4 cut(s)	180, 283, 297, 338
SetI	ASST	9 cut(s)	141, 149, 180, 213, 234, 246, 255, 297, 374
SgrDI	CGTCGACG	1 cut(s)	248
SinI	GGWCC	1 cut(s)	144
SmlI	CTYRAG	1 cut(s)	83
SmoI	CTYRAG	1 cut(s)	83
SphI	GCATGC	1 cut(s)	277
Sse9I	AATT	2 cut(s)	12, 43
SseBI	AGGCCT	1 cut(s)	125
SsiI	CCGC	5 cut(s)	5, 26, 220, 277, 284
SstI	GAGCTC	2 cut(s)	180, 297
StuI	AGGCCT	1 cut(s)	125
StyD4I	CCNGG	2 cut(s)	105, 288
TaaI	ACNGT	1 cut(s)	367
TaiI	ACGT	1 cut(s)	255
TaqI	TCGA	7 cut(s)	63, 114, 159, 249, 255, 309, 338
TasI	AATT	2 cut(s)	12, 43
TspGWI	ACGGA	1 cut(s)	316
VpaK11BI	GGWCC	1 cut(s)	144
XceI	RCATGY	1 cut(s)	277
XmiI	GTMKAC	2 cut(s)	249, 255
ZraI	GACGTC	1 cut(s)	253

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.