Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002407.1

Orthogroup ID

OG0018222

Physical Location & Seq

Genomic Coordinates Forward (+)

72282 .. 72638

Gene Structure 357 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002407.1_g000012.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 357 bp

atgtgccactcctcttccccctccctccctcaccggccctctctattacgctctcggctagcgcaccccctcgactcccaccccttcttgttcaagcccgcgctcttcctctccccggacttcgattctgaggcctacatctccgacctccgaaccttcatccccttcgatatcctccgatccgagctccagtcctatctggcctccctcaaccacgagctcatcgacttcatcaaccgcgacttcgtcaacctcagcaccaagctcgtcgtcgatgtcgactccgccgtggtgcttctacgggccccactcctggagctcaaggagaagatcgagcagttcagaggctccgtgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005795 GO:0005829 GO:0006810 GO:0006891 GO:0006996 GO:0007030 GO:0008104 GO:0008150 GO:0008565 GO:0009987 GO:0010256 GO:0012505 GO:0015031 GO:0015833 GO:0016043 GO:0016192 GO:0017119 GO:0031984 GO:0032991 GO:0033036 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0044877 GO:0045184 GO:0048193 GO:0051179 GO:0051234 GO:0071702 GO:0071705 GO:0071840 GO:0098791 GO:0099023

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

COG2 DUF3510

Protein Analysis

118

Amino Acids

13.46

Weight (kDa)

5.9

Isoelectric Point (pI)

64.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018222)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000005879
rosa_multiflora	Rmu_sc0002073.1_g000021 Rmu_sc0002407.1_g000012 Rmu_sc0009827.1_g000006 Rmu_sc0036508.1_g000001
rosa_roxburghii	Rroxscaffold_1G00022180
rosa_samantha	Rh2BG395400 Rh2DG373500 Rh4CG071600 Rh6AG235100 Rh7DG176300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	279
AccII	CGCG	2 cut(s)	101, 240
AciI	CCGC	3 cut(s)	99, 238, 285
AclWI	GGATC	1 cut(s)	174
AfiI	CCNNNNNNNGG	2 cut(s)	115, 313
AgsI	TTSAA	1 cut(s)	94
AjnI	CCWGG	1 cut(s)	312
AluBI	AGCT	4 cut(s)	187, 220, 265, 319
AluI	AGCT	4 cut(s)	187, 220, 265, 319
Alw21I	GWGCWC	3 cut(s)	189, 222, 321
AlwI	GGATC	1 cut(s)	174
AoxI	GGCC	4 cut(s)	35, 132, 201, 303
ApaI	GGGCCC	1 cut(s)	307
AspLEI	GCGC	2 cut(s)	64, 103
AspS9I	GGNCC	3 cut(s)	36, 303, 304
AsuC2I	CCSGG	1 cut(s)	116
AsuHPI	GGTGA	1 cut(s)	23
AsuNHI	GCTAGC	1 cut(s)	58
BaeGI	GKGCMC	1 cut(s)	307
BanII	GRGCYC	4 cut(s)	189, 222, 307, 321
BauI	CACGAG	1 cut(s)	215
Bbv12I	GWGCWC	3 cut(s)	189, 222, 321
BbvCI	CCTCAGC	1 cut(s)	254
BceAI	ACGGC	1 cut(s)	272
BcgI	CGANNNNNNTGC	2 cut(s)	247, 281
BciT130I	CCWGG	1 cut(s)	314
BcnI	CCSGG	1 cut(s)	116
BfaI	CTAG	1 cut(s)	59
Bme1390I	CCNGG	2 cut(s)	116, 314
BmgT120I	GGNCC	3 cut(s)	36, 303, 304
BmiI	GGNNCC	3 cut(s)	305, 306, 349
BmrFI	CCNGG	2 cut(s)	116, 314
BmtI	GCTAGC	1 cut(s)	62
BpmI	CTGGAG	2 cut(s)	173, 335
Bpu10I	CCTNAGC	1 cut(s)	254
BpuEI	CTTGAG	1 cut(s)	305
BpuMI	CCSGG	1 cut(s)	116
BsaJI	CCNNGG	2 cut(s)	114, 288
Bsc4I	CCNNNNNNNGG	2 cut(s)	115, 313
Bse118I	RCCGGY	1 cut(s)	33
Bse1I	ACTGG	1 cut(s)	190
BseBI	CCWGG	1 cut(s)	314
BseDI	CCNNGG	2 cut(s)	114, 288
BseGI	GGATG	1 cut(s)	159
BseLI	CCNNNNNNNGG	2 cut(s)	115, 313
BseMII	CTCAG	2 cut(s)	120, 268
BseNI	ACTGG	1 cut(s)	190
BseSI	GKGCMC	1 cut(s)	307
Bsh1236I	CGCG	2 cut(s)	101, 240
BshFI	GGCC	4 cut(s)	37, 134, 203, 305
BsiHKAI	GWGCWC	3 cut(s)	189, 222, 321
BsiSI	CCGG	2 cut(s)	34, 116
BslI	CCNNNNNNNGG	2 cut(s)	115, 313
BsnI	GGCC	4 cut(s)	37, 134, 203, 305
Bsp120I	GGGCCC	1 cut(s)	303
Bsp1286I	GDGCHC	4 cut(s)	189, 222, 307, 321
Bsp143I	GATC	2 cut(s)	179, 330
BspACI	CCGC	3 cut(s)	99, 238, 285
BspANI	GGCC	4 cut(s)	37, 134, 203, 305
BspCNI	CTCAG	2 cut(s)	121, 267
BspFNI	CGCG	2 cut(s)	101, 240
BspLI	GGNNCC	3 cut(s)	305, 306, 349
BspOI	GCTAGC	1 cut(s)	62
BspPI	GGATC	1 cut(s)	174
BspQI	GCTCTTC	1 cut(s)	110
BsrFI	RCCGGY	1 cut(s)	33
BsrI	ACTGG	1 cut(s)	190
BssAI	RCCGGY	1 cut(s)	33
BssECI	CCNNGG	2 cut(s)	114, 288
BssMI	GATC	2 cut(s)	179, 330
BssSI	CACGAG	1 cut(s)	215
Bst2BI	CACGAG	1 cut(s)	215
Bst2UI	CCWGG	1 cut(s)	314
Bst6I	CTCTTC	2 cut(s)	19, 110
BstC8I	GCNNGC	2 cut(s)	60, 99
BstDEI	CTNAG	2 cut(s)	129, 254
BstDSI	CCRYGG	1 cut(s)	288
BstF5I	GGATG	1 cut(s)	159
BstFNI	CGCG	2 cut(s)	101, 240
BstHHI	GCGC	2 cut(s)	64, 103
BstKTI	GATC	2 cut(s)	182, 333
BstMBI	GATC	2 cut(s)	179, 330
BstNI	CCWGG	1 cut(s)	314
BstSCI	CCNGG	2 cut(s)	114, 312
BstSLI	GKGCMC	1 cut(s)	307
BstUI	CGCG	2 cut(s)	101, 240
BsuRI	GGCC	4 cut(s)	37, 134, 203, 305
BtgI	CCRYGG	1 cut(s)	288
BtsCI	GGATG	1 cut(s)	159
Cac8I	GCNNGC	2 cut(s)	60, 99
CfoI	GCGC	2 cut(s)	64, 103
Cfr10I	RCCGGY	1 cut(s)	33
Cfr13I	GGNCC	3 cut(s)	36, 303, 304
DdeI	CTNAG	2 cut(s)	129, 254
DpnI	GATC	2 cut(s)	181, 332
DpnII	GATC	2 cut(s)	179, 330
Eam1104I	CTCTTC	2 cut(s)	19, 110
EarI	CTCTTC	2 cut(s)	19, 110
EciI	GGCGGA	1 cut(s)	274
Ecl136II	GAGCTC	3 cut(s)	187, 220, 319
Eco147I	AGGCCT	1 cut(s)	134
Eco24I	GRGCYC	4 cut(s)	189, 222, 307, 321
Eco32I	GATATC	1 cut(s)	172
Eco53kI	GAGCTC	3 cut(s)	187, 220, 319
EcoICRI	GAGCTC	3 cut(s)	187, 220, 319
EcoO109I	RGGNCCY	1 cut(s)	304
EcoRII	CCWGG	1 cut(s)	312
EcoRV	GATATC	1 cut(s)	172
EcoT38I	GRGCYC	4 cut(s)	189, 222, 307, 321
FauI	CCCGC	1 cut(s)	106
FblI	GTMKAC	1 cut(s)	279
FokI	GGATG	1 cut(s)	146
FriOI	GRGCYC	4 cut(s)	189, 222, 307, 321
FspBI	CTAG	1 cut(s)	59
GlaI	GCGC	2 cut(s)	63, 102
GsuI	CTGGAG	2 cut(s)	173, 335
HaeIII	GGCC	4 cut(s)	37, 134, 203, 305
HapII	CCGG	2 cut(s)	34, 116
HhaI	GCGC	2 cut(s)	64, 103
Hin6I	GCGC	2 cut(s)	62, 101
HinP1I	GCGC	2 cut(s)	62, 101
HincII	GTYRAC	2 cut(s)	250, 280
HindII	GTYRAC	2 cut(s)	250, 280
HinfI	GANTC	3 cut(s)	74, 125, 281
HpaII	CCGG	2 cut(s)	34, 116
HphI	GGTGA	1 cut(s)	23
Hpy166II	GTNNAC	2 cut(s)	250, 280
Hpy188I	TCNGA	6 cut(s)	130, 145, 152, 179, 184, 344
Hpy8I	GTNNAC	2 cut(s)	250, 280
Hpy99I	CGWCG	2 cut(s)	272, 275
HpyAV	CCTTC	3 cut(s)	94, 166, 175
HpyF3I	CTNAG	2 cut(s)	129, 254
HspAI	GCGC	2 cut(s)	62, 101
Kzo9I	GATC	2 cut(s)	179, 330
LguI	GCTCTTC	1 cut(s)	110
LmnI	GCTCC	3 cut(s)	192, 316, 353
LpnPI	CCDG	6 cut(s)	47, 129, 185, 203, 299, 326
MaeI	CTAG	1 cut(s)	59
MalI	GATC	2 cut(s)	181, 332
MboI	GATC	2 cut(s)	179, 330
MboII	GAAGA	3 cut(s)	6, 97, 340
MhlI	GDGCHC	4 cut(s)	189, 222, 307, 321
MlyI	GAGTC	2 cut(s)	68, 275
MmeI	TCCRAC	1 cut(s)	168
MspI	CCGG	2 cut(s)	34, 116
MspR9I	CCNGG	2 cut(s)	116, 314
MvaI	CCWGG	1 cut(s)	314
MvnI	CGCG	2 cut(s)	101, 240
NciI	CCSGG	1 cut(s)	116
NdeII	GATC	2 cut(s)	179, 330
NheI	GCTAGC	1 cut(s)	58
NlaIV	GGNNCC	3 cut(s)	305, 306, 349
NmeAIII	GCCGAG	1 cut(s)	34
PceI	AGGCCT	1 cut(s)	134
PciSI	GCTCTTC	1 cut(s)	110
PcsI	WCGNNNNNNNCGW	3 cut(s)	222, 276, 285
PfeI	GAWTC	1 cut(s)	125
PflFI	GACNNNGTC	1 cut(s)	245
PfoI	TCCNGGA	1 cut(s)	312
PleI	GAGTC	2 cut(s)	68, 275
PpsI	GAGTC	2 cut(s)	68, 275
Psp124BI	GAGCTC	3 cut(s)	189, 222, 321
Psp6I	CCWGG	1 cut(s)	312
PspGI	CCWGG	1 cut(s)	312
PspN4I	GGNNCC	3 cut(s)	305, 306, 349
PspOMI	GGGCCC	1 cut(s)	303
PspPI	GGNCC	3 cut(s)	36, 303, 304
PsyI	GACNNNGTC	1 cut(s)	245
SacI	GAGCTC	3 cut(s)	189, 222, 321
SalI	GTCGAC	1 cut(s)	278
SapI	GCTCTTC	1 cut(s)	110
Sau3AI	GATC	2 cut(s)	179, 330
Sau96I	GGNCC	3 cut(s)	36, 303, 304
SchI	GAGTC	2 cut(s)	68, 275
ScrFI	CCNGG	2 cut(s)	116, 314
SduI	GDGCHC	4 cut(s)	189, 222, 307, 321
SetI	ASST	7 cut(s)	150, 158, 189, 222, 255, 267, 321
SmlI	CTYRAG	1 cut(s)	320
SmoI	CTYRAG	1 cut(s)	320
SseBI	AGGCCT	1 cut(s)	134
SsiI	CCGC	3 cut(s)	99, 238, 285
SspMI	CTAG	1 cut(s)	59
SstI	GAGCTC	3 cut(s)	189, 222, 321
StuI	AGGCCT	1 cut(s)	134
StyD4I	CCNGG	2 cut(s)	114, 312
TaqI	TCGA	7 cut(s)	72, 123, 168, 225, 273, 279, 333
TfiI	GAWTC	1 cut(s)	125
TspDTI	ATGAA	2 cut(s)	148, 220
TspGWI	ACGGA	1 cut(s)	340
Tth111I	GACNNNGTC	1 cut(s)	245
XmiI	GTMKAC	1 cut(s)	279
XspI	CTAG	1 cut(s)	59

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.