Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0003890

Physical Location & Seq

Genomic Coordinates Reverse (-)

15286283 .. 15286957

Gene Structure 675 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000007283

Sequence Viewer

CDS Protein Promoter (2k)

Length: 309 bp

ATGTCAAAGGAGAGCTCAACGGCCCGATTCCCAGCTCGAAACATTTCGAGGATGTTGCAGCAGAAGCTGAACAAGAACGAGTTAGAAACGCCAGCGAATCCAATCCAAGTTCAGCCTCCGAGGACGCCTCTAAATAGCATAGCAGATCCAGCACAATTGCAGAAAGAGTTTCATGAACTCGATTTCAATTCGCATCCGAAGCTCGAAGCGATTAGATCCGTGAGCAAAGTTCCGGTGTACAATGGAGGGAGAGCTAGAAGTTCTTCTAGGATCTCCGGGAGATTCCGGTGGCCAATTTGGAGATTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003774 GO:0003777 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0005871 GO:0005875 GO:0006928 GO:0007017 GO:0007018 GO:0008150 GO:0009987 GO:0015630 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0032991 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Kinesin

Protein Analysis

103

Amino Acids

11.74

Weight (kDa)

11.18

Isoelectric Point (pI)

63.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003890)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G17360 AT3G17360 AT3G17360
fragaria_vesca	FvH4_4g21170 FvH4_4g21170 FvH4_4g21170
malus_domestica	MD16G1139300.v1.1
prunus_persica	Prupe.1G108800_v2.0.a1 Prupe.1G108800_v2.0.a1 Prupe.1G108800_v2.0.a1 Prupe.1G108800_v2.0.a1 Prupe.1G108800_v2.0.a1 Prupe.1G108800_v2.0.a1 Prupe.1G108800_v2.0.a1 Prupe.1G108800_v2.0.a1 Prupe.1G108800_v2.0.a1 Prupe.1G108800_v2.0.a1
pyrus_communis	pycom16g12370
rosa_chinensis	RchiOBHm_Chr4g0426741
rosa_laevigata	RLG00000007281 RLG00000007283
rosa_multiflora	Rmu_co8032912.1_g000001 Rmu_sc0021664.1_g000001 Rmu_sc0021665.1_g000001 Rmu_sc0033496.1_g000001
rosa_roxburghii	Rroxscaffold_5G00368740
rosa_rugosa	Rorug04G0214500 Rorug04G0214500 Rorug04G0214500
rosa_samantha	Rh4AG269600 Rh4BG275900 Rh4CG290500 Rh4DG272900
rosa_wichuraiana	Rw4G023390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	3 cut(s)	140, 210, 278
AcoI	YGGCCR	1 cut(s)	290
AcyI	GRCGYC	1 cut(s)	125
AfaI	GTAC	1 cut(s)	239
AgsI	TTSAA	1 cut(s)	187
AluBI	AGCT	5 cut(s)	15, 35, 67, 202, 254
AluI	AGCT	5 cut(s)	15, 35, 67, 202, 254
Alw21I	GWGCWC	1 cut(s)	17
AlwI	GGATC	3 cut(s)	140, 210, 278
AlwNI	CAGNNNCTG	1 cut(s)	67
AoxI	GGCC	2 cut(s)	21, 290
ApeKI	GCWGC	1 cut(s)	58
Asp700I	GAANNNNTTC	2 cut(s)	43, 262
AspS9I	GGNCC	1 cut(s)	22
AsuC2I	CCSGG	1 cut(s)	277
BalI	TGGCCA	1 cut(s)	292
BanII	GRGCYC	1 cut(s)	17
Bbv12I	GWGCWC	1 cut(s)	17
BbvI	GCAGC	1 cut(s)	70
BceAI	ACGGC	1 cut(s)	36
BcgI	CGANNNNNNTGC	2 cut(s)	37, 71
BcnI	CCSGG	1 cut(s)	277
BfaI	CTAG	2 cut(s)	255, 267
BisI	GCNGC	1 cut(s)	59
BlsI	GCNGC	1 cut(s)	60
Bme1390I	CCNGG	1 cut(s)	277
BmgT120I	GGNCC	1 cut(s)	22
BmrFI	CCNGG	1 cut(s)	277
BmsI	GCATC	1 cut(s)	202
BplI	GAGNNNNNCTC	2 cut(s)	112, 144
BpuMI	CCSGG	1 cut(s)	277
BsaHI	GRCGYC	1 cut(s)	125
BsaJI	CCNNGG	1 cut(s)	119
BsaWI	WCCGGW	2 cut(s)	232, 285
BseDI	CCNNGG	1 cut(s)	119
BseGI	GGATG	2 cut(s)	57, 193
BseXI	GCAGC	1 cut(s)	70
BseYI	CCCAGC	1 cut(s)	31
BshFI	GGCC	2 cut(s)	23, 292
BsiHKAI	GWGCWC	1 cut(s)	17
BsiSI	CCGG	3 cut(s)	233, 276, 286
BsnI	GGCC	2 cut(s)	23, 292
Bsp1286I	GDGCHC	1 cut(s)	17
Bsp1407I	TGTACA	1 cut(s)	237
Bsp143I	GATC	3 cut(s)	145, 215, 270
BspANI	GGCC	2 cut(s)	23, 292
BspHI	TCATGA	1 cut(s)	172
BspPI	GGATC	3 cut(s)	140, 210, 278
BsrGI	TGTACA	1 cut(s)	237
BssECI	CCNNGG	1 cut(s)	119
BssMI	GATC	3 cut(s)	145, 215, 270
BssNI	GRCGYC	1 cut(s)	125
BstACI	GRCGYC	1 cut(s)	125
BstAUI	TGTACA	1 cut(s)	237
BstC8I	GCNNGC	1 cut(s)	93
BstF5I	GGATG	2 cut(s)	57, 193
BstKTI	GATC	3 cut(s)	148, 218, 273
BstMBI	GATC	3 cut(s)	145, 215, 270
BstMWI	GCNNNNNNNGC	3 cut(s)	64, 149, 199
BstSCI	CCNGG	1 cut(s)	275
BstV1I	GCAGC	1 cut(s)	70
BstX2I	RGATCY	3 cut(s)	145, 215, 270
BstYI	RGATCY	3 cut(s)	145, 215, 270
BsuRI	GGCC	2 cut(s)	23, 292
BtsCI	GGATG	2 cut(s)	57, 193
Cac8I	GCNNGC	1 cut(s)	93
CaiI	CAGNNNCTG	1 cut(s)	67
CciI	TCATGA	1 cut(s)	172
Cfr13I	GGNCC	1 cut(s)	22
CseI	GACGC	1 cut(s)	133
Csp6I	GTAC	1 cut(s)	238
CviAII	CATG	1 cut(s)	173
CviJI	RGCY	8 cut(s)	15, 23, 35, 67, 115, 202, 254, 292
CviKI_1	RGCY	8 cut(s)	15, 23, 35, 67, 115, 202, 254, 292
CviQI	GTAC	1 cut(s)	238
DpnI	GATC	3 cut(s)	147, 217, 272
DpnII	GATC	3 cut(s)	145, 215, 270
EaeI	YGGCCR	1 cut(s)	290
Ecl136II	GAGCTC	1 cut(s)	15
Eco24I	GRGCYC	1 cut(s)	17
Eco53kI	GAGCTC	1 cut(s)	15
EcoICRI	GAGCTC	1 cut(s)	15
EcoT38I	GRGCYC	1 cut(s)	17
FaeI	CATG	1 cut(s)	176
FaiI	YATR	2 cut(s)	140, 174
FatI	CATG	1 cut(s)	172
Fnu4HI	GCNGC	1 cut(s)	59
FokI	GGATG	2 cut(s)	64, 180
FriOI	GRGCYC	1 cut(s)	17
Fsp4HI	GCNGC	1 cut(s)	59
FspBI	CTAG	2 cut(s)	255, 267
GluI	GCNGC	1 cut(s)	59
GsaI	CCCAGC	1 cut(s)	35
HaeIII	GGCC	2 cut(s)	23, 292
HapII	CCGG	3 cut(s)	233, 276, 286
HgaI	GACGC	1 cut(s)	133
Hin1I	GRCGYC	1 cut(s)	125
Hin1II	CATG	1 cut(s)	176
HinfI	GANTC	3 cut(s)	27, 97, 282
HpaII	CCGG	3 cut(s)	233, 276, 286
Hpy166II	GTNNAC	1 cut(s)	238
Hpy188I	TCNGA	2 cut(s)	120, 198
Hpy188III	TCNNGA	1 cut(s)	173
Hpy8I	GTNNAC	1 cut(s)	238
HpyCH4V	TGCA	2 cut(s)	58, 160
HpyF10VI	GCNNNNNNNGC	3 cut(s)	64, 149, 199
Hsp92I	GRCGYC	1 cut(s)	125
Hsp92II	CATG	1 cut(s)	176
Kzo9I	GATC	3 cut(s)	145, 215, 270
LpnPI	CCDG	6 cut(s)	45, 105, 162, 246, 289, 299
Lsp1109I	GCAGC	1 cut(s)	70
LweI	GCATC	1 cut(s)	202
MaeI	CTAG	2 cut(s)	255, 267
MalI	GATC	3 cut(s)	147, 217, 272
MboI	GATC	3 cut(s)	145, 215, 270
MboII	GAAGA	1 cut(s)	255
MfeI	CAATTG	1 cut(s)	155
MflI	RGATCY	3 cut(s)	145, 215, 270
MhlI	GDGCHC	1 cut(s)	17
MlsI	TGGCCA	1 cut(s)	292
MluCI	AATT	3 cut(s)	155, 187, 294
MluNI	TGGCCA	1 cut(s)	292
MnlI	CCTC	5 cut(s)	42, 114, 126, 138, 239
Mox20I	TGGCCA	1 cut(s)	292
MroXI	GAANNNNTTC	2 cut(s)	43, 262
MscI	TGGCCA	1 cut(s)	292
Msp20I	TGGCCA	1 cut(s)	292
MspI	CCGG	3 cut(s)	233, 276, 286
MspR9I	CCNGG	1 cut(s)	277
MunI	CAATTG	1 cut(s)	155
MwoI	GCNNNNNNNGC	3 cut(s)	64, 149, 199
NciI	CCSGG	1 cut(s)	277
NdeII	GATC	3 cut(s)	145, 215, 270
NlaIII	CATG	1 cut(s)	176
PagI	TCATGA	1 cut(s)	172
PdmI	GAANNNNTTC	2 cut(s)	43, 262
PfeI	GAWTC	3 cut(s)	27, 97, 282
PfoI	TCCNGGA	1 cut(s)	275
PkrI	GCNGC	1 cut(s)	60
Psp124BI	GAGCTC	1 cut(s)	17
PspFI	CCCAGC	1 cut(s)	31
PspPI	GGNCC	1 cut(s)	22
PstNI	CAGNNNCTG	1 cut(s)	67
PsuI	RGATCY	3 cut(s)	145, 215, 270
RsaI	GTAC	1 cut(s)	239
RsaNI	GTAC	1 cut(s)	238
SacI	GAGCTC	1 cut(s)	17
SatI	GCNGC	1 cut(s)	59
Sau3AI	GATC	3 cut(s)	145, 215, 270
Sau96I	GGNCC	1 cut(s)	22
ScrFI	CCNGG	1 cut(s)	277
SduI	GDGCHC	1 cut(s)	17
SetI	ASST	5 cut(s)	17, 37, 69, 204, 256
SfaNI	GCATC	1 cut(s)	202
Sse9I	AATT	3 cut(s)	155, 187, 294
SspMI	CTAG	2 cut(s)	255, 267
SstI	GAGCTC	1 cut(s)	17
StyD4I	CCNGG	1 cut(s)	275
TaqI	TCGA	4 cut(s)	37, 47, 180, 204
TasI	AATT	3 cut(s)	155, 187, 294
TatI	WGTACW	1 cut(s)	237
TfiI	GAWTC	3 cut(s)	27, 97, 282
TseI	GCWGC	1 cut(s)	58
TspDTI	ATGAA	2 cut(s)	161, 189
TspGWI	ACGGA	1 cut(s)	208
XmnI	GAANNNNTTC	2 cut(s)	43, 262
XspI	CTAG	2 cut(s)	255, 267

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.