Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0021664.1

Orthogroup ID

OG0003890

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 1195

Gene Structure 1195 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0021664.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 783 bp

atgtcgaaggagagctcaacggcacgattcccagcccgaaacgtttcgaggacgccgcagccggagccgaacgagaacgagttcgaaacgccggcgaatcccatccaatttccgcctccgaggacgcctctgaacagcatagcagatccagcgcaattgcagaaggagtttctcgaactcgatttggattcccatccgaagctcgaagcggttagatccggtaggttttctttatcggagagaaggctcgaggctttggataaaggtggaaatgccggtctcagcttcggaactcctagggtttcgggcagaggaggaaaggcgcactcggagcctaactcggcacaaagcactccggcgagaaatcgagcttcgattggaggttgtgcagtgagcagagctccggtgtacaatggaggcagagcggggagttcttctagaaccttccgggagattccggcggccaattcggagattttgactcaagtaccgcattttgagcttgctgaagactcgtcgttttggactgatcacaatgtgcaggtactaattcgaattcggccattgagtagaatggagagggctttgcaagggtgtggtaggtgtttgaagcaggagagctcacaaactttggtgttgcatggtcctcctgatgctagattcacatttgatcatattgcatgcgagatgatatcacaggaaaagctgttcaaggttgcaggaatgcccatggtggagaattgcttgtctggttataatagctgtatgttcgcctacggtcag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003774 GO:0003777 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0005871 GO:0005875 GO:0006928 GO:0007017 GO:0007018 GO:0008150 GO:0009987 GO:0015630 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0032991 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Kinesin

Protein Analysis

261

Amino Acids

28.6

Weight (kDa)

8.24

Isoelectric Point (pI)

56.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003890)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G17360 AT3G17360 AT3G17360
fragaria_vesca	FvH4_4g21170 FvH4_4g21170 FvH4_4g21170
malus_domestica	MD16G1139300.v1.1
prunus_persica	Prupe.1G108800_v2.0.a1 Prupe.1G108800_v2.0.a1 Prupe.1G108800_v2.0.a1 Prupe.1G108800_v2.0.a1 Prupe.1G108800_v2.0.a1 Prupe.1G108800_v2.0.a1 Prupe.1G108800_v2.0.a1 Prupe.1G108800_v2.0.a1 Prupe.1G108800_v2.0.a1 Prupe.1G108800_v2.0.a1
pyrus_communis	pycom16g12370
rosa_chinensis	RchiOBHm_Chr4g0426741
rosa_laevigata	RLG00000007281 RLG00000007283
rosa_multiflora	Rmu_co8032912.1_g000001 Rmu_sc0021664.1_g000001 Rmu_sc0021665.1_g000001 Rmu_sc0033496.1_g000001
rosa_roxburghii	Rroxscaffold_5G00368740
rosa_rugosa	Rorug04G0214500 Rorug04G0214500 Rorug04G0214500
rosa_samantha	Rh4AG269600 Rh4BG275900 Rh4CG290500 Rh4DG272900
rosa_wichuraiana	Rw4G023390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	756
Acc36I	ACCTGC	1 cut(s)	532
AccBSI	CCGCTC	1 cut(s)	425
AciI	CCGC	6 cut(s)	56, 113, 209, 425, 461, 491
AclI	AACGTT	1 cut(s)	42
AclWI	GGATC	2 cut(s)	140, 210
AcoI	YGGCCR	2 cut(s)	462, 560
AcsI	RAATTY	1 cut(s)	555
AcuI	CTGAAG	1 cut(s)	528
AcyI	GRCGYC	2 cut(s)	53, 125
AdeI	CACNNNGTG	1 cut(s)	538
AfaI	GTAC	3 cut(s)	410, 489, 546
AgsI	TTSAA	2 cut(s)	610, 712
AloI	GAACNNNNNNTCC	2 cut(s)	692, 724
AluBI	AGCT	9 cut(s)	15, 202, 285, 371, 401, 502, 621, 706, 762
AluI	AGCT	9 cut(s)	15, 202, 285, 371, 401, 502, 621, 706, 762
Alw21I	GWGCWC	3 cut(s)	17, 403, 623
Alw26I	GTCTC	1 cut(s)	284
AlwI	GGATC	2 cut(s)	140, 210
Ama87I	CYCGRG	1 cut(s)	248
AoxI	GGCC	2 cut(s)	462, 560
ApeKI	GCWGC	1 cut(s)	58
ApoI	RAATTY	1 cut(s)	555
Asp700I	GAANNNNTTC	2 cut(s)	43, 80
AspA2I	CCTAGG	1 cut(s)	296
AspLEI	GCGC	2 cut(s)	154, 325
AspS9I	GGNCC	1 cut(s)	644
AsuC2I	CCSGG	1 cut(s)	449
AsuII	TTCGAA	2 cut(s)	84, 553
AvaI	CYCGRG	1 cut(s)	248
AvaII	GGWCC	1 cut(s)	644
AvrII	CCTAGG	1 cut(s)	296
BaeI	ACNNNNGTAYC	2 cut(s)	471, 504
BanII	GRGCYC	3 cut(s)	17, 403, 623
BbsI	GAAGAC	1 cut(s)	516
Bbv12I	GWGCWC	3 cut(s)	17, 403, 623
BbvI	GCAGC	1 cut(s)	70
BccI	CCATC	2 cut(s)	110, 201
BceAI	ACGGC	1 cut(s)	36
BclI	TGATCA	2 cut(s)	529, 670
BcnI	CCSGG	1 cut(s)	449
BcoDI	GTCTC	1 cut(s)	284
BfaI	CTAG	3 cut(s)	297, 438, 657
BfuAI	ACCTGC	1 cut(s)	532
BisI	GCNGC	3 cut(s)	56, 59, 462
BlnI	CCTAGG	1 cut(s)	296
BlsI	GCNGC	3 cut(s)	57, 60, 463
Bme1390I	CCNGG	1 cut(s)	449
Bme18I	GGWCC	1 cut(s)	644
BmeT110I	CYCGRG	1 cut(s)	248
BmgT120I	GGNCC	1 cut(s)	644
BmiI	GGNNCC	2 cut(s)	66, 333
BmrFI	CCNGG	1 cut(s)	449
BmsI	GCATC	1 cut(s)	643
BpiI	GAAGAC	1 cut(s)	516
BplI	GAGNNNNNCTC	6 cut(s)	112, 144, 323, 355, 385, 417
Bpu14I	TTCGAA	2 cut(s)	84, 553
BpuEI	CTTGAG	1 cut(s)	468
BpuMI	CCSGG	1 cut(s)	449
BsaBI	GATNNNNATC	1 cut(s)	192
BsaHI	GRCGYC	2 cut(s)	53, 125
BsaI	GGTCTC	1 cut(s)	284
BsaJI	CCNNGG	3 cut(s)	119, 296, 729
BsaWI	WCCGGW	2 cut(s)	218, 403
Bse118I	RCCGGY	2 cut(s)	91, 275
Bse8I	GATNNNNATC	1 cut(s)	192
BseDI	CCNNGG	3 cut(s)	119, 296, 729
BseGI	GGATG	2 cut(s)	102, 193
BseJI	GATNNNNATC	1 cut(s)	192
BseMII	CTCAG	1 cut(s)	295
BseRI	GAGGAG	1 cut(s)	327
BseXI	GCAGC	1 cut(s)	70
BseYI	CCCAGC	1 cut(s)	31
BsgI	GTGCAG	2 cut(s)	408, 560
BshFI	GGCC	2 cut(s)	464, 562
BsiHKAI	GWGCWC	3 cut(s)	17, 403, 623
BsiHKCI	CYCGRG	1 cut(s)	248
BsiSI	CCGG	8 cut(s)	62, 92, 219, 276, 356, 404, 448, 458
BsmAI	GTCTC	1 cut(s)	284
BsmI	GAATGC	1 cut(s)	729
BsnI	GGCC	2 cut(s)	464, 562
Bso31I	GGTCTC	1 cut(s)	284
BsoBI	CYCGRG	1 cut(s)	248
Bsp119I	TTCGAA	2 cut(s)	84, 553
Bsp1286I	GDGCHC	3 cut(s)	17, 403, 623
Bsp1407I	TGTACA	1 cut(s)	408
Bsp143I	GATC	4 cut(s)	145, 215, 529, 670
Bsp19I	CCATGG	1 cut(s)	729
BspACI	CCGC	6 cut(s)	56, 113, 209, 425, 461, 491
BspANI	GGCC	2 cut(s)	464, 562
BspCNI	CTCAG	1 cut(s)	294
BspLI	GGNNCC	2 cut(s)	66, 333
BspMI	ACCTGC	1 cut(s)	532
BspPI	GGATC	2 cut(s)	140, 210
BspT104I	TTCGAA	2 cut(s)	84, 553
BspTNI	GGTCTC	1 cut(s)	284
BsrBI	CCGCTC	1 cut(s)	425
BsrFI	RCCGGY	2 cut(s)	91, 275
BsrGI	TGTACA	1 cut(s)	408
BssAI	RCCGGY	2 cut(s)	91, 275
BssECI	CCNNGG	3 cut(s)	119, 296, 729
BssMI	GATC	4 cut(s)	145, 215, 529, 670
BssNI	GRCGYC	2 cut(s)	53, 125
BssT1I	CCWWGG	2 cut(s)	296, 729
Bst4CI	ACNGT	1 cut(s)	779
BstACI	GRCGYC	2 cut(s)	53, 125
BstAUI	TGTACA	1 cut(s)	408
BstBI	TTCGAA	2 cut(s)	84, 553
BstC8I	GCNNGC	3 cut(s)	93, 504, 682
BstDEI	CTNAG	1 cut(s)	281
BstDSI	CCRYGG	1 cut(s)	729
BstF5I	GGATG	2 cut(s)	102, 193
BstHHI	GCGC	2 cut(s)	154, 325
BstKTI	GATC	4 cut(s)	148, 218, 532, 673
BstMAI	GTCTC	1 cut(s)	284
BstMBI	GATC	4 cut(s)	145, 215, 529, 670
BstMWI	GCNNNNNNNGC	4 cut(s)	64, 149, 331, 499
BstNSI	RCATGY	1 cut(s)	684
BstSCI	CCNGG	1 cut(s)	447
BstV1I	GCAGC	1 cut(s)	70
BstV2I	GAAGAC	1 cut(s)	516
BstX2I	RGATCY	2 cut(s)	145, 215
BstYI	RGATCY	2 cut(s)	145, 215
BsuRI	GGCC	2 cut(s)	464, 562
BtgI	CCRYGG	1 cut(s)	729
BtsCI	GGATG	2 cut(s)	102, 193
BtsI	GCAGTG	1 cut(s)	396
BtsIMutI	CAGTG	1 cut(s)	396
BveI	ACCTGC	1 cut(s)	532
Cac8I	GCNNGC	3 cut(s)	93, 504, 682
CfoI	GCGC	2 cut(s)	154, 325
Cfr10I	RCCGGY	2 cut(s)	91, 275
Cfr13I	GGNCC	1 cut(s)	644
CseI	GACGC	2 cut(s)	61, 133
Csp6I	GTAC	3 cut(s)	409, 488, 545
CviAII	CATG	3 cut(s)	641, 681, 730
CviQI	GTAC	3 cut(s)	409, 488, 545
DdeI	CTNAG	1 cut(s)	281
DpnI	GATC	4 cut(s)	147, 217, 531, 672
DpnII	GATC	4 cut(s)	145, 215, 529, 670
DraIII	CACNNNGTG	1 cut(s)	538
EaeI	YGGCCR	2 cut(s)	462, 560
EciI	GGCGGA	1 cut(s)	102
Ecl136II	GAGCTC	3 cut(s)	15, 401, 621
Eco130I	CCWWGG	2 cut(s)	296, 729
Eco24I	GRGCYC	3 cut(s)	17, 403, 623
Eco31I	GGTCTC	1 cut(s)	284
Eco32I	GATATC	1 cut(s)	693
Eco47I	GGWCC	1 cut(s)	644
Eco53kI	GAGCTC	3 cut(s)	15, 401, 621
Eco57I	CTGAAG	1 cut(s)	528
Eco88I	CYCGRG	1 cut(s)	248
EcoICRI	GAGCTC	3 cut(s)	15, 401, 621
EcoRI	GAATTC	1 cut(s)	555
EcoRV	GATATC	1 cut(s)	693
EcoT14I	CCWWGG	2 cut(s)	296, 729
EcoT38I	GRGCYC	3 cut(s)	17, 403, 623
ErhI	CCWWGG	2 cut(s)	296, 729
FaeI	CATG	3 cut(s)	644, 684, 733
FaiI	YATR	7 cut(s)	140, 642, 675, 682, 731, 756, 767
FatI	CATG	3 cut(s)	640, 680, 729
FauI	CCCGC	1 cut(s)	418
FbaI	TGATCA	2 cut(s)	529, 670
Fnu4HI	GCNGC	3 cut(s)	56, 59, 462
FokI	GGATG	2 cut(s)	89, 180
FriOI	GRGCYC	3 cut(s)	17, 403, 623
Fsp4HI	GCNGC	3 cut(s)	56, 59, 462
FspBI	CTAG	3 cut(s)	297, 438, 657
GlaI	GCGC	2 cut(s)	153, 324
GluI	GCNGC	3 cut(s)	56, 59, 462
GsaI	CCCAGC	1 cut(s)	35
HaeIII	GGCC	2 cut(s)	464, 562
HapII	CCGG	8 cut(s)	62, 92, 219, 276, 356, 404, 448, 458
HgaI	GACGC	2 cut(s)	61, 133
HhaI	GCGC	2 cut(s)	154, 325
Hin1I	GRCGYC	2 cut(s)	53, 125
Hin1II	CATG	3 cut(s)	644, 684, 733
Hin6I	GCGC	2 cut(s)	152, 323
HinP1I	GCGC	2 cut(s)	152, 323
HinfI	GANTC	7 cut(s)	27, 97, 188, 454, 481, 512, 660
HpaII	CCGG	8 cut(s)	62, 92, 219, 276, 356, 404, 448, 458
Hpy166II	GTNNAC	1 cut(s)	409
Hpy188I	TCNGA	7 cut(s)	120, 132, 198, 238, 290, 331, 472
Hpy188III	TCNNGA	3 cut(s)	173, 438, 650
Hpy8I	GTNNAC	1 cut(s)	409
Hpy99I	CGWCG	1 cut(s)	520
HpyAV	CCTTC	3 cut(s)	157, 237, 454
HpyCH4III	ACNGT	1 cut(s)	779
HpyCH4IV	ACGT	1 cut(s)	42
HpyCH4V	TGCA	7 cut(s)	160, 389, 541, 589, 640, 680, 719
HpyF10VI	GCNNNNNNNGC	4 cut(s)	64, 149, 331, 499
HpyF3I	CTNAG	1 cut(s)	281
HpySE526I	ACGT	1 cut(s)	42
Hsp92I	GRCGYC	2 cut(s)	53, 125
Hsp92II	CATG	3 cut(s)	644, 684, 733
HspAI	GCGC	2 cut(s)	152, 323
KroI	GCCGGC	1 cut(s)	91
KroNI	GCCGGC	1 cut(s)	93
Ksp22I	TGATCA	2 cut(s)	529, 670
Kzo9I	GATC	4 cut(s)	145, 215, 529, 670
LmnI	GCTCC	3 cut(s)	64, 331, 406
Lsp1109I	GCAGC	1 cut(s)	70
LweI	GCATC	1 cut(s)	643
MaeI	CTAG	3 cut(s)	297, 438, 657
MaeII	ACGT	1 cut(s)	42
MalI	GATC	4 cut(s)	147, 217, 531, 672
MbiI	CCGCTC	1 cut(s)	425
MboI	GATC	4 cut(s)	145, 215, 529, 670
MboII	GAAGA	2 cut(s)	426, 521
MfeI	CAATTG	1 cut(s)	155
MflI	RGATCY	2 cut(s)	145, 215
MhlI	GDGCHC	3 cut(s)	17, 403, 623
MluCI	AATT	6 cut(s)	107, 155, 466, 549, 555, 739
MlyI	GAGTC	2 cut(s)	475, 506
MreI	CGCCGGCG	1 cut(s)	91
MroNI	GCCGGC	1 cut(s)	91
MroXI	GAANNNNTTC	2 cut(s)	43, 80
MspI	CCGG	8 cut(s)	62, 92, 219, 276, 356, 404, 448, 458
MspR9I	CCNGG	1 cut(s)	449
MunI	CAATTG	1 cut(s)	155
Mva1269I	GAATGC	1 cut(s)	729
MwoI	GCNNNNNNNGC	4 cut(s)	64, 149, 331, 499
NaeI	GCCGGC	1 cut(s)	93
NciI	CCSGG	1 cut(s)	449
NcoI	CCATGG	1 cut(s)	729
NdeII	GATC	4 cut(s)	145, 215, 529, 670
NgoMIV	GCCGGC	1 cut(s)	91
NlaIII	CATG	3 cut(s)	644, 684, 733
NlaIV	GGNNCC	2 cut(s)	66, 333
NmeAIII	GCCGAG	1 cut(s)	320
NspI	RCATGY	1 cut(s)	684
NspV	TTCGAA	2 cut(s)	84, 553
PaeI	GCATGC	1 cut(s)	684
PaeR7I	CTCGAG	1 cut(s)	248
PctI	GAATGC	1 cut(s)	729
PdiI	GCCGGC	1 cut(s)	93
PdmI	GAANNNNTTC	2 cut(s)	43, 80
PfeI	GAWTC	5 cut(s)	27, 97, 188, 454, 660
PfoI	TCCNGGA	1 cut(s)	447
PkrI	GCNGC	3 cut(s)	57, 60, 463
PleI	GAGTC	2 cut(s)	475, 506
PpsI	GAGTC	2 cut(s)	475, 506
PsiI	TTATAA	1 cut(s)	756
Psp124BI	GAGCTC	3 cut(s)	17, 403, 623
Psp1406I	AACGTT	1 cut(s)	42
PspFI	CCCAGC	1 cut(s)	31
PspN4I	GGNNCC	2 cut(s)	66, 333
PspPI	GGNCC	1 cut(s)	644
PspXI	VCTCGAGB	1 cut(s)	248
PsuI	RGATCY	2 cut(s)	145, 215
RsaI	GTAC	3 cut(s)	410, 489, 546
RsaNI	GTAC	3 cut(s)	409, 488, 545
SacI	GAGCTC	3 cut(s)	17, 403, 623
SatI	GCNGC	3 cut(s)	56, 59, 462
Sau3AI	GATC	4 cut(s)	145, 215, 529, 670
Sau96I	GGNCC	1 cut(s)	644
SchI	GAGTC	2 cut(s)	475, 506
ScrFI	CCNGG	1 cut(s)	449
SduI	GDGCHC	3 cut(s)	17, 403, 623
SfaNI	GCATC	1 cut(s)	643
Sfr274I	CTCGAG	1 cut(s)	248
SfuI	TTCGAA	2 cut(s)	84, 553
SgrAI	CRCCGGYG	1 cut(s)	91
SinI	GGWCC	1 cut(s)	644
SlaI	CTCGAG	1 cut(s)	248
SmlI	CTYRAG	2 cut(s)	248, 483
SmoI	CTYRAG	2 cut(s)	248, 483
SphI	GCATGC	1 cut(s)	684
Sse9I	AATT	6 cut(s)	107, 155, 466, 549, 555, 739
SsiI	CCGC	6 cut(s)	56, 113, 209, 425, 461, 491
SspMI	CTAG	3 cut(s)	297, 438, 657
SstI	GAGCTC	3 cut(s)	17, 403, 623
StyD4I	CCNGG	1 cut(s)	447
StyI	CCWWGG	2 cut(s)	296, 729
TaaI	ACNGT	1 cut(s)	779
TaiI	ACGT	1 cut(s)	45
TasI	AATT	6 cut(s)	107, 155, 466, 549, 555, 739
TatI	WGTACW	1 cut(s)	408
TauI	GCSGC	2 cut(s)	58, 464
TfiI	GAWTC	5 cut(s)	27, 97, 188, 454, 660
TscAI	CASTG	1 cut(s)	396
TseI	GCWGC	1 cut(s)	58
TspRI	CASTG	1 cut(s)	396
VpaK11BI	GGWCC	1 cut(s)	644
XapI	RAATTY	1 cut(s)	555
XbaI	TCTAGA	1 cut(s)	437
XceI	RCATGY	1 cut(s)	684
XhoI	CTCGAG	1 cut(s)	248
XmaJI	CCTAGG	1 cut(s)	296
XmnI	GAANNNNTTC	2 cut(s)	43, 80
XspI	CTAG	3 cut(s)	297, 438, 657

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.