Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0021665.1

Orthogroup ID

OG0003890

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 753

Gene Structure 753 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0021665.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 443 bp

gaaatcgagcttcgattggaggttgtgcagtgagcagagctccggtgtacaatggaggcagagcggggagttcttctagaatctcccgggagattccggcggccaattcagagattttgactcaagtaccgcattttgagcttgctgaagactcgtcgttttggactgatcacaatgtgcaggtactaattcgaattcggccattgagtagaatggagagggctttgcaagggtgtggtaggtgtttgaagcaggagagctcacaaactttggtgttgcatggtcctcctgatgctagattcacatttgatcatattgcatgcgagatgatatcacaggaaaagctgttcaaggttgcaggaatgcccatggtggagaattgcttgtctggttataatagctgtatgttcgcctacggtcaggtaatttgtgctgcaagttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003774 GO:0003777 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0005871 GO:0005875 GO:0006928 GO:0007017 GO:0007018 GO:0008150 GO:0009987 GO:0015630 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0032991 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Kinesin

Protein Analysis

146

Amino Acids

15.95

Weight (kDa)

7.77

Isoelectric Point (pI)

56.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003890)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G17360 AT3G17360 AT3G17360
fragaria_vesca	FvH4_4g21170 FvH4_4g21170 FvH4_4g21170
malus_domestica	MD16G1139300.v1.1
prunus_persica	Prupe.1G108800_v2.0.a1 Prupe.1G108800_v2.0.a1 Prupe.1G108800_v2.0.a1 Prupe.1G108800_v2.0.a1 Prupe.1G108800_v2.0.a1 Prupe.1G108800_v2.0.a1 Prupe.1G108800_v2.0.a1 Prupe.1G108800_v2.0.a1 Prupe.1G108800_v2.0.a1 Prupe.1G108800_v2.0.a1
pyrus_communis	pycom16g12370
rosa_chinensis	RchiOBHm_Chr4g0426741
rosa_laevigata	RLG00000007281 RLG00000007283
rosa_multiflora	Rmu_co8032912.1_g000001 Rmu_sc0021664.1_g000001 Rmu_sc0021665.1_g000001 Rmu_sc0033496.1_g000001
rosa_roxburghii	Rroxscaffold_5G00368740
rosa_rugosa	Rorug04G0214500 Rorug04G0214500 Rorug04G0214500
rosa_samantha	Rh4AG269600 Rh4BG275900 Rh4CG290500 Rh4DG272900
rosa_wichuraiana	Rw4G023390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	395
Acc36I	ACCTGC	1 cut(s)	171
AccBSI	CCGCTC	1 cut(s)	64
AciI	CCGC	3 cut(s)	64, 100, 130
AcoI	YGGCCR	2 cut(s)	101, 199
AcsI	RAATTY	1 cut(s)	194
AcuI	CTGAAG	1 cut(s)	167
AdeI	CACNNNGTG	1 cut(s)	177
AfaI	GTAC	3 cut(s)	49, 128, 185
AgsI	TTSAA	2 cut(s)	249, 351
AloI	GAACNNNNNNTCC	2 cut(s)	331, 363
AluBI	AGCT	6 cut(s)	10, 40, 141, 260, 345, 401
AluI	AGCT	6 cut(s)	10, 40, 141, 260, 345, 401
Alw21I	GWGCWC	2 cut(s)	42, 262
Ama87I	CYCGRG	1 cut(s)	86
AoxI	GGCC	2 cut(s)	101, 199
ApeKI	GCWGC	1 cut(s)	433
ApoI	RAATTY	1 cut(s)	194
AspS9I	GGNCC	1 cut(s)	283
AsuC2I	CCSGG	2 cut(s)	87, 88
AsuII	TTCGAA	1 cut(s)	192
AvaI	CYCGRG	1 cut(s)	86
AvaII	GGWCC	1 cut(s)	283
BaeI	ACNNNNGTAYC	2 cut(s)	110, 143
BanII	GRGCYC	2 cut(s)	42, 262
BbsI	GAAGAC	1 cut(s)	155
Bbv12I	GWGCWC	2 cut(s)	42, 262
BbvI	GCAGC	1 cut(s)	420
BclI	TGATCA	2 cut(s)	168, 309
BcnI	CCSGG	2 cut(s)	87, 88
BfaI	CTAG	2 cut(s)	77, 296
BfuAI	ACCTGC	1 cut(s)	171
BisI	GCNGC	2 cut(s)	101, 434
BlsI	GCNGC	2 cut(s)	102, 435
Bme1390I	CCNGG	2 cut(s)	87, 88
Bme18I	GGWCC	1 cut(s)	283
BmeT110I	CYCGRG	1 cut(s)	86
BmgT120I	GGNCC	1 cut(s)	283
BmrFI	CCNGG	2 cut(s)	87, 88
BmsI	GCATC	1 cut(s)	282
BpiI	GAAGAC	1 cut(s)	155
BplI	GAGNNNNNCTC	2 cut(s)	24, 56
Bpu14I	TTCGAA	1 cut(s)	192
BpuEI	CTTGAG	1 cut(s)	107
BpuMI	CCSGG	2 cut(s)	87, 88
BsaJI	CCNNGG	2 cut(s)	86, 368
BsaWI	WCCGGW	1 cut(s)	42
BseDI	CCNNGG	2 cut(s)	86, 368
BseXI	GCAGC	1 cut(s)	420
BsgI	GTGCAG	2 cut(s)	47, 199
BshFI	GGCC	2 cut(s)	103, 201
BsiHKAI	GWGCWC	2 cut(s)	42, 262
BsiHKCI	CYCGRG	1 cut(s)	86
BsiSI	CCGG	3 cut(s)	43, 87, 97
BsmI	GAATGC	1 cut(s)	368
BsnI	GGCC	2 cut(s)	103, 201
BsoBI	CYCGRG	1 cut(s)	86
Bsp119I	TTCGAA	1 cut(s)	192
Bsp1286I	GDGCHC	2 cut(s)	42, 262
Bsp1407I	TGTACA	1 cut(s)	47
Bsp143I	GATC	2 cut(s)	168, 309
Bsp19I	CCATGG	1 cut(s)	368
BspACI	CCGC	3 cut(s)	64, 100, 130
BspANI	GGCC	2 cut(s)	103, 201
BspMI	ACCTGC	1 cut(s)	171
BspT104I	TTCGAA	1 cut(s)	192
BsrBI	CCGCTC	1 cut(s)	64
BsrGI	TGTACA	1 cut(s)	47
BssECI	CCNNGG	2 cut(s)	86, 368
BssMI	GATC	2 cut(s)	168, 309
BssT1I	CCWWGG	1 cut(s)	368
Bst4CI	ACNGT	1 cut(s)	418
BstAUI	TGTACA	1 cut(s)	47
BstBI	TTCGAA	1 cut(s)	192
BstC8I	GCNNGC	2 cut(s)	143, 321
BstDSI	CCRYGG	1 cut(s)	368
BstKTI	GATC	2 cut(s)	171, 312
BstMBI	GATC	2 cut(s)	168, 309
BstMWI	GCNNNNNNNGC	1 cut(s)	138
BstNSI	RCATGY	1 cut(s)	323
BstSCI	CCNGG	2 cut(s)	85, 86
BstV1I	GCAGC	1 cut(s)	420
BstV2I	GAAGAC	1 cut(s)	155
BsuRI	GGCC	2 cut(s)	103, 201
BtgI	CCRYGG	1 cut(s)	368
BtsI	GCAGTG	1 cut(s)	35
BtsIMutI	CAGTG	1 cut(s)	35
BveI	ACCTGC	1 cut(s)	171
Cac8I	GCNNGC	2 cut(s)	143, 321
Cfr13I	GGNCC	1 cut(s)	283
Cfr9I	CCCGGG	1 cut(s)	86
Csp6I	GTAC	3 cut(s)	48, 127, 184
CviAII	CATG	3 cut(s)	280, 320, 369
CviJI	RGCY	9 cut(s)	10, 40, 103, 141, 201, 223, 260, 345, 401
CviKI_1	RGCY	9 cut(s)	10, 40, 103, 141, 201, 223, 260, 345, 401
CviQI	GTAC	3 cut(s)	48, 127, 184
DpnI	GATC	2 cut(s)	170, 311
DpnII	GATC	2 cut(s)	168, 309
DraIII	CACNNNGTG	1 cut(s)	177
EaeI	YGGCCR	2 cut(s)	101, 199
Ecl136II	GAGCTC	2 cut(s)	40, 260
Eco130I	CCWWGG	1 cut(s)	368
Eco24I	GRGCYC	2 cut(s)	42, 262
Eco32I	GATATC	1 cut(s)	332
Eco47I	GGWCC	1 cut(s)	283
Eco53kI	GAGCTC	2 cut(s)	40, 260
Eco57I	CTGAAG	1 cut(s)	167
Eco88I	CYCGRG	1 cut(s)	86
EcoICRI	GAGCTC	2 cut(s)	40, 260
EcoRI	GAATTC	1 cut(s)	194
EcoRV	GATATC	1 cut(s)	332
EcoT14I	CCWWGG	1 cut(s)	368
EcoT38I	GRGCYC	2 cut(s)	42, 262
ErhI	CCWWGG	1 cut(s)	368
FaeI	CATG	3 cut(s)	283, 323, 372
FaiI	YATR	6 cut(s)	281, 314, 321, 370, 395, 406
FatI	CATG	3 cut(s)	279, 319, 368
FauI	CCCGC	1 cut(s)	57
FbaI	TGATCA	2 cut(s)	168, 309
Fnu4HI	GCNGC	2 cut(s)	101, 434
FriOI	GRGCYC	2 cut(s)	42, 262
Fsp4HI	GCNGC	2 cut(s)	101, 434
FspBI	CTAG	2 cut(s)	77, 296
GluI	GCNGC	2 cut(s)	101, 434
HaeIII	GGCC	2 cut(s)	103, 201
HapII	CCGG	3 cut(s)	43, 87, 97
Hin1II	CATG	3 cut(s)	283, 323, 372
HinfI	GANTC	5 cut(s)	80, 93, 120, 151, 299
HpaII	CCGG	3 cut(s)	43, 87, 97
Hpy166II	GTNNAC	1 cut(s)	48
Hpy188I	TCNGA	1 cut(s)	111
Hpy188III	TCNNGA	2 cut(s)	77, 289
Hpy8I	GTNNAC	1 cut(s)	48
Hpy99I	CGWCG	1 cut(s)	159
HpyCH4III	ACNGT	1 cut(s)	418
HpyCH4V	TGCA	7 cut(s)	28, 180, 228, 279, 319, 358, 436
HpyF10VI	GCNNNNNNNGC	1 cut(s)	138
Hsp92II	CATG	3 cut(s)	283, 323, 372
Ksp22I	TGATCA	2 cut(s)	168, 309
Kzo9I	GATC	2 cut(s)	168, 309
LmnI	GCTCC	1 cut(s)	45
Lsp1109I	GCAGC	1 cut(s)	420
LweI	GCATC	1 cut(s)	282
MaeI	CTAG	2 cut(s)	77, 296
MalI	GATC	2 cut(s)	170, 311
MbiI	CCGCTC	1 cut(s)	64
MboI	GATC	2 cut(s)	168, 309
MboII	GAAGA	2 cut(s)	65, 160
MhlI	GDGCHC	2 cut(s)	42, 262
MluCI	AATT	5 cut(s)	105, 188, 194, 378, 425
MlyI	GAGTC	2 cut(s)	114, 145
MnlI	CCTC	4 cut(s)	13, 49, 212, 296
MseI	TTAA	1 cut(s)	441
MspI	CCGG	3 cut(s)	43, 87, 97
MspR9I	CCNGG	2 cut(s)	87, 88
Mva1269I	GAATGC	1 cut(s)	368
MwoI	GCNNNNNNNGC	1 cut(s)	138
NciI	CCSGG	2 cut(s)	87, 88
NcoI	CCATGG	1 cut(s)	368
NdeII	GATC	2 cut(s)	168, 309
NlaIII	CATG	3 cut(s)	283, 323, 372
NspI	RCATGY	1 cut(s)	323
NspV	TTCGAA	1 cut(s)	192
PaeI	GCATGC	1 cut(s)	323
PctI	GAATGC	1 cut(s)	368
PfeI	GAWTC	3 cut(s)	80, 93, 299
PkrI	GCNGC	2 cut(s)	102, 435
PleI	GAGTC	2 cut(s)	114, 145
PpsI	GAGTC	2 cut(s)	114, 145
PsiI	TTATAA	1 cut(s)	395
Psp124BI	GAGCTC	2 cut(s)	42, 262
PspPI	GGNCC	1 cut(s)	283
RsaI	GTAC	3 cut(s)	49, 128, 185
RsaNI	GTAC	3 cut(s)	48, 127, 184
SacI	GAGCTC	2 cut(s)	42, 262
SaqAI	TTAA	1 cut(s)	441
SatI	GCNGC	2 cut(s)	101, 434
Sau3AI	GATC	2 cut(s)	168, 309
Sau96I	GGNCC	1 cut(s)	283
SchI	GAGTC	2 cut(s)	114, 145
ScrFI	CCNGG	2 cut(s)	87, 88
SduI	GDGCHC	2 cut(s)	42, 262
SfaNI	GCATC	1 cut(s)	282
SfuI	TTCGAA	1 cut(s)	192
SinI	GGWCC	1 cut(s)	283
SmaI	CCCGGG	1 cut(s)	88
SmlI	CTYRAG	1 cut(s)	122
SmoI	CTYRAG	1 cut(s)	122
SphI	GCATGC	1 cut(s)	323
Sse9I	AATT	5 cut(s)	105, 188, 194, 378, 425
SsiI	CCGC	3 cut(s)	64, 100, 130
SspMI	CTAG	2 cut(s)	77, 296
SstI	GAGCTC	2 cut(s)	42, 262
StyD4I	CCNGG	2 cut(s)	85, 86
StyI	CCWWGG	1 cut(s)	368
TaaI	ACNGT	1 cut(s)	418
TaqI	TCGA	3 cut(s)	6, 13, 192
TasI	AATT	5 cut(s)	105, 188, 194, 378, 425
TatI	WGTACW	1 cut(s)	47
TauI	GCSGC	1 cut(s)	103
TfiI	GAWTC	3 cut(s)	80, 93, 299
Tru1I	TTAA	1 cut(s)	441
Tru9I	TTAA	1 cut(s)	441
TscAI	CASTG	1 cut(s)	35
TseI	GCWGC	1 cut(s)	433
TspMI	CCCGGG	1 cut(s)	86
TspRI	CASTG	1 cut(s)	35
VpaK11BI	GGWCC	1 cut(s)	283
XapI	RAATTY	1 cut(s)	194
XbaI	TCTAGA	1 cut(s)	76
XceI	RCATGY	1 cut(s)	323
XmaI	CCCGGG	1 cut(s)	86
XspI	CTAG	2 cut(s)	77, 296

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.