Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0033496.1

Orthogroup ID

OG0003890

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 3347

Gene Structure 3347 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0033496.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1434 bp

gttggtgataatgtctctagttgatttagcgcatgggaagcagagacatgttccttatagagattcgaggcttacatttctgcttcaggattctctgggtgggaactctaaaacaactataattgcaaatgtcagcccatctagttgttctgcaaatgagacgctaagcactttgaagtttgcccagcgtgcgaaacttatccagaacaatgctaaagtgaatgaagatgcttcaggtgacataactgctcttcagcgacacatccaacagttaaagggccagttgtcctttctgatgaagcatcataacctctcatggccttcatcaagttgtgccccaagtattgaagaacctagactcggtgacttgcctgaggaagacaactgtataggagagaaaacagaaactgatagtcataagatgtcaagtgtccaaaacaagaagttgaaatgcatggaagccattttggttggtgccctgagaagggaaaagatggcagacaatgcactacagaatttggtggctgaaattgaacatatgaaccatttggcccgtgaaagagtggaggatgatagacatactaaaataatgctaaggtctcgtgatgagaaaattaaaagacttgagttgttggtggatggaatgttgtctgccgagaagtatcttatggaagagaacaaagctttgctagaagagatgcagatgcttcaaacaagacctgatggaaatccagaattgacccgatatgctgtggagaacagtagacttcttgagcaacttcaattgtatcaaaaattttacgaacacggagagcgagaaacattgctagctgaagtatcagaattacgtaatcagcttctggatatacttcaaaaaaagcttccattctcaactgaaaatgaaagtcagaatagtgatatcagaaaggaattggaagattgcaggaacatgaactctaagctgattagggaagtagatgaactacaattagaaatgagaaagtacatgagctccagtcaagctgcatccgactctgtcagagattctttctccaagggtgctgaggagttcaggcaatcagagaaatattcaatggtggaaaccttatctgtgcgaagtgactctggagatgaaatggcatcttataccgaggcagatgatgaggctttacagaatcatgtgattcataaccaaaatggtgatgatactcgaaagaagttgatggatgctaaagtgttgactgaggcagggaagtctgagcaggcttgtttgaaatcacctgattttcgtaaggaaagcatgggtttgctgacggatagcagtaaagatgttgagaggagagctttacaagtcaagttggacaaaatggctaaggacctggaggaggtcaaatcacttaatagccactttcaagaagataagctattacagtt

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003774 GO:0003777 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0005871 GO:0005875 GO:0006928 GO:0007017 GO:0007018 GO:0008150 GO:0009987 GO:0015630 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0032991 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Kinesin

Protein Analysis

477

Amino Acids

54.46

Weight (kDa)

5.5

Isoelectric Point (pI)

59.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003890)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G17360 AT3G17360 AT3G17360
fragaria_vesca	FvH4_4g21170 FvH4_4g21170 FvH4_4g21170
malus_domestica	MD16G1139300.v1.1
prunus_persica	Prupe.1G108800_v2.0.a1 Prupe.1G108800_v2.0.a1 Prupe.1G108800_v2.0.a1 Prupe.1G108800_v2.0.a1 Prupe.1G108800_v2.0.a1 Prupe.1G108800_v2.0.a1 Prupe.1G108800_v2.0.a1 Prupe.1G108800_v2.0.a1 Prupe.1G108800_v2.0.a1 Prupe.1G108800_v2.0.a1
pyrus_communis	pycom16g12370
rosa_chinensis	RchiOBHm_Chr4g0426741
rosa_laevigata	RLG00000007281 RLG00000007283
rosa_multiflora	Rmu_co8032912.1_g000001 Rmu_sc0021664.1_g000001 Rmu_sc0021665.1_g000001 Rmu_sc0033496.1_g000001
rosa_roxburghii	Rroxscaffold_5G00368740
rosa_rugosa	Rorug04G0214500 Rorug04G0214500 Rorug04G0214500
rosa_samantha	Rh4AG269600 Rh4BG275900 Rh4CG290500 Rh4DG272900
rosa_wichuraiana	Rw4G023390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	474
AccI	GTMKAC	1 cut(s)	764
AcsI	RAATTY	2 cut(s)	515, 795
AcuI	CTGAAG	4 cut(s)	69, 217, 237, 853
AfaI	GTAC	1 cut(s)	1005
AfiI	CCNNNNNNNGG	4 cut(s)	360, 484, 485, 1385
AflIII	ACRYGT	1 cut(s)	47
AjnI	CCWGG	1 cut(s)	1378
AluBI	AGCT	9 cut(s)	684, 831, 857, 881, 962, 1012, 1023, 1344, 1424
AluI	AGCT	9 cut(s)	684, 831, 857, 881, 962, 1012, 1023, 1344, 1424
Alw21I	GWGCWC	1 cut(s)	1014
Alw26I	GTCTC	4 cut(s)	19, 38, 153, 604
AlwNI	CAGNNNCTG	2 cut(s)	408, 860
AoxI	GGCC	3 cut(s)	278, 318, 550
ApeKI	GCWGC	1 cut(s)	1023
ApoI	RAATTY	2 cut(s)	515, 795
AspLEI	GCGC	1 cut(s)	32
AspS9I	GGNCC	3 cut(s)	278, 551, 1376
AsuHPI	GGTGA	5 cut(s)	17, 249, 375, 1212, 1270
AsuNHI	GCTAGC	1 cut(s)	827
AvaII	GGWCC	1 cut(s)	1376
AxyI	CCTNAGG	1 cut(s)	373
BaeGI	GKGCMC	2 cut(s)	338, 479
BanI	GGYRCC	1 cut(s)	474
BanII	GRGCYC	1 cut(s)	1014
BauI	CACGAG	1 cut(s)	601
BbsI	GAAGAC	1 cut(s)	385
Bbv12I	GWGCWC	1 cut(s)	1014
BbvCI	CCTCAGC	1 cut(s)	1063
BbvI	GCAGC	1 cut(s)	1010
BccI	CCATC	5 cut(s)	146, 488, 633, 717, 1217
BciT130I	CCWGG	1 cut(s)	1380
BcoDI	GTCTC	4 cut(s)	19, 38, 153, 604
BfaI	CTAG	5 cut(s)	18, 142, 355, 690, 828
BfmI	CTRYAG	1 cut(s)	510
BisI	GCNGC	1 cut(s)	1024
BlpI	GCTNAGC	1 cut(s)	165
BlsI	GCNGC	1 cut(s)	1025
Bme1390I	CCNGG	1 cut(s)	1380
Bme18I	GGWCC	1 cut(s)	1376
BmgT120I	GGNCC	3 cut(s)	278, 551, 1376
BmiI	GGNNCC	1 cut(s)	476
BmrFI	CCNGG	1 cut(s)	1380
BmsI	GCATC	7 cut(s)	218, 311, 688, 694, 1035, 1149, 1217
BmtI	GCTAGC	1 cut(s)	831
BpiI	GAAGAC	1 cut(s)	385
BpmI	CTGGAG	3 cut(s)	998, 1147, 1401
Bpu10I	CCTNAGC	3 cut(s)	594, 1063, 1372
Bpu1102I	GCTNAGC	1 cut(s)	165
BpuEI	CTTGAG	2 cut(s)	645, 792
BsaAI	YACGTR	1 cut(s)	849
BsaBI	GATNNNNATC	1 cut(s)	727
BsaI	GGTCTC	1 cut(s)	604
BsaJI	CCNNGG	2 cut(s)	1054, 1150
BsaXI	ACNNNNNCTCC	2 cut(s)	996, 1026
Bsc4I	CCNNNNNNNGG	4 cut(s)	360, 484, 485, 1385
Bse1I	ACTGG	2 cut(s)	281, 1015
Bse21I	CCTNAGG	1 cut(s)	373
Bse3DI	GCAATG	1 cut(s)	822
Bse8I	GATNNNNATC	1 cut(s)	727
BseBI	CCWGG	1 cut(s)	1380
BseDI	CCNNGG	2 cut(s)	1054, 1150
BseGI	GGATG	5 cut(s)	262, 575, 644, 1026, 1232
BseJI	GATNNNNATC	1 cut(s)	727
BseLI	CCNNNNNNNGG	4 cut(s)	360, 484, 485, 1385
BseMI	GCAATG	1 cut(s)	822
BseMII	CTCAG	5 cut(s)	364, 471, 1054, 1234, 1249
BseNI	ACTGG	2 cut(s)	281, 1015
BseRI	GAGGAG	3 cut(s)	1080, 1352, 1398
BseSI	GKGCMC	2 cut(s)	338, 479
BseXI	GCAGC	1 cut(s)	1010
BseYI	CCCAGC	1 cut(s)	184
BshFI	GGCC	3 cut(s)	280, 320, 552
BshNI	GGYRCC	1 cut(s)	474
BsiHKAI	GWGCWC	1 cut(s)	1014
BslI	CCNNNNNNNGG	4 cut(s)	360, 484, 485, 1385
BsmAI	GTCTC	4 cut(s)	19, 38, 153, 604
BsmBI	CGTCTC	1 cut(s)	153
BsnI	GGCC	3 cut(s)	280, 320, 552
Bso31I	GGTCTC	1 cut(s)	604
Bsp1286I	GDGCHC	3 cut(s)	338, 479, 1014
Bsp1720I	GCTNAGC	1 cut(s)	165
BspANI	GGCC	3 cut(s)	280, 320, 552
BspCNI	CTCAG	5 cut(s)	365, 472, 1055, 1235, 1250
BspLI	GGNNCC	1 cut(s)	476
BspOI	GCTAGC	1 cut(s)	831
BspQI	GCTCTTC	1 cut(s)	256
BspT107I	GGYRCC	1 cut(s)	474
BspTNI	GGTCTC	1 cut(s)	604
BsrDI	GCAATG	1 cut(s)	822
BsrI	ACTGG	2 cut(s)	281, 1015
BssECI	CCNNGG	2 cut(s)	1054, 1150
BssSI	CACGAG	1 cut(s)	601
BssT1I	CCWWGG	1 cut(s)	1054
Bst2BI	CACGAG	1 cut(s)	601
Bst2UI	CCWGG	1 cut(s)	1380
Bst4CI	ACNGT	4 cut(s)	271, 387, 762, 1432
Bst6I	CTCTTC	3 cut(s)	256, 667, 688
BstAPI	GCANNNNNTGC	1 cut(s)	504
BstBAI	YACGTR	1 cut(s)	849
BstC8I	GCNNGC	3 cut(s)	190, 829, 1264
BstDEI	CTNAG	9 cut(s)	165, 373, 480, 594, 958, 1063, 1243, 1258, 1372
BstENI	CCTNNNNNAGG	1 cut(s)	1383
BstF5I	GGATG	5 cut(s)	262, 575, 644, 1026, 1232
BstHHI	GCGC	1 cut(s)	32
BstMAI	GTCTC	4 cut(s)	19, 38, 153, 604
BstMWI	GCNNNNNNNGC	3 cut(s)	38, 189, 504
BstNI	CCWGG	1 cut(s)	1380
BstNSI	RCATGY	1 cut(s)	51
BstSCI	CCNGG	1 cut(s)	1378
BstSFI	CTRYAG	1 cut(s)	510
BstSLI	GKGCMC	2 cut(s)	338, 479
BstSNI	TACGTA	1 cut(s)	849
BstV1I	GCAGC	1 cut(s)	1010
BstV2I	GAAGAC	1 cut(s)	385
Bsu36I	CCTNAGG	1 cut(s)	373
BsuRI	GGCC	3 cut(s)	280, 320, 552
BtsCI	GGATG	5 cut(s)	262, 575, 644, 1026, 1232
Cac8I	GCNNGC	3 cut(s)	190, 829, 1264
CaiI	CAGNNNCTG	2 cut(s)	408, 860
CfoI	GCGC	1 cut(s)	32
Cfr13I	GGNCC	3 cut(s)	278, 551, 1376
CseI	GACGC	1 cut(s)	170
Csp6I	GTAC	1 cut(s)	1004
CviAII	CATG	8 cut(s)	33, 48, 316, 455, 950, 1007, 1179, 1301
CviQI	GTAC	1 cut(s)	1004
DdeI	CTNAG	9 cut(s)	165, 373, 480, 594, 958, 1063, 1243, 1258, 1372
Eam1104I	CTCTTC	3 cut(s)	256, 667, 688
EarI	CTCTTC	3 cut(s)	256, 667, 688
Ecl136II	GAGCTC	1 cut(s)	1012
Eco105I	TACGTA	1 cut(s)	849
Eco130I	CCWWGG	1 cut(s)	1054
Eco24I	GRGCYC	1 cut(s)	1014
Eco31I	GGTCTC	1 cut(s)	604
Eco32I	GATATC	1 cut(s)	920
Eco47I	GGWCC	1 cut(s)	1376
Eco53kI	GAGCTC	1 cut(s)	1012
Eco57I	CTGAAG	4 cut(s)	69, 217, 237, 853
Eco81I	CCTNAGG	1 cut(s)	373
EcoICRI	GAGCTC	1 cut(s)	1012
EcoNI	CCTNNNNNAGG	1 cut(s)	1383
EcoO109I	RGGNCCY	1 cut(s)	1376
EcoRII	CCWGG	1 cut(s)	1378
EcoRV	GATATC	1 cut(s)	920
EcoT14I	CCWWGG	1 cut(s)	1054
EcoT22I	ATGCAT	1 cut(s)	456
EcoT38I	GRGCYC	1 cut(s)	1014
ErhI	CCWWGG	1 cut(s)	1054
Esp3I	CGTCTC	1 cut(s)	153
FaeI	CATG	8 cut(s)	36, 51, 319, 458, 953, 1010, 1182, 1304
FatI	CATG	8 cut(s)	32, 47, 315, 454, 949, 1006, 1178, 1300
FauNDI	CATATG	1 cut(s)	538
FblI	GTMKAC	1 cut(s)	764
Fnu4HI	GCNGC	1 cut(s)	1024
FokI	GGATG	5 cut(s)	249, 582, 651, 1013, 1239
FriOI	GRGCYC	1 cut(s)	1014
Fsp4HI	GCNGC	1 cut(s)	1024
FspBI	CTAG	5 cut(s)	18, 142, 355, 690, 828
GlaI	GCGC	1 cut(s)	31
GluI	GCNGC	1 cut(s)	1024
GsaI	CCCAGC	1 cut(s)	188
GsuI	CTGGAG	3 cut(s)	998, 1147, 1401
HaeIII	GGCC	3 cut(s)	280, 320, 552
HgaI	GACGC	1 cut(s)	170
HhaI	GCGC	1 cut(s)	32
Hin1II	CATG	8 cut(s)	36, 51, 319, 458, 953, 1010, 1182, 1304
Hin6I	GCGC	1 cut(s)	30
HinP1I	GCGC	1 cut(s)	30
HincII	GTYRAC	1 cut(s)	1240
HindII	GTYRAC	1 cut(s)	1240
HindIII	AAGCTT	2 cut(s)	682, 879
HinfI	GANTC	8 cut(s)	63, 90, 358, 1032, 1044, 1122, 1175, 1184
HphI	GGTGA	5 cut(s)	17, 249, 375, 1212, 1270
Hpy166II	GTNNAC	2 cut(s)	765, 1240
Hpy188I	TCNGA	8 cut(s)	295, 842, 910, 924, 1031, 1041, 1082, 1259
Hpy188III	TCNNGA	8 cut(s)	87, 203, 603, 732, 771, 861, 1126, 1413
Hpy8I	GTNNAC	2 cut(s)	765, 1240
HpyAV	CCTTC	2 cut(s)	331, 478
HpyCH4III	ACNGT	4 cut(s)	271, 387, 762, 1432
HpyCH4IV	ACGT	1 cut(s)	848
HpyCH4V	TGCA	7 cut(s)	126, 153, 454, 507, 701, 943, 1026
HpyF10VI	GCNNNNNNNGC	3 cut(s)	38, 189, 504
HpyF3I	CTNAG	9 cut(s)	165, 373, 480, 594, 958, 1063, 1243, 1258, 1372
HpySE526I	ACGT	1 cut(s)	848
Hsp92II	CATG	8 cut(s)	36, 51, 319, 458, 953, 1010, 1182, 1304
HspAI	GCGC	1 cut(s)	30
LguI	GCTCTTC	1 cut(s)	256
LmnI	GCTCC	1 cut(s)	1017
Lsp1109I	GCAGC	1 cut(s)	1010
LweI	GCATC	7 cut(s)	218, 311, 688, 694, 1035, 1149, 1217
MaeI	CTAG	5 cut(s)	18, 142, 355, 690, 828
MaeII	ACGT	1 cut(s)	848
MaeIII	GTNAC	3 cut(s)	237, 363, 1119
MboII	GAAGA	8 cut(s)	237, 243, 360, 390, 684, 705, 948, 1428
MfeI	CAATTG	1 cut(s)	783
MhlI	GDGCHC	3 cut(s)	338, 479, 1014
MlyI	GAGTC	3 cut(s)	352, 1026, 1116
MmeI	TCCRAC	3 cut(s)	290, 1054, 1339
Mph1103I	ATGCAT	1 cut(s)	456
MseI	TTAA	3 cut(s)	273, 616, 1399
MspR9I	CCNGG	1 cut(s)	1380
MunI	CAATTG	1 cut(s)	783
MvaI	CCWGG	1 cut(s)	1380
MwoI	GCNNNNNNNGC	3 cut(s)	38, 189, 504
NdeI	CATATG	1 cut(s)	538
NheI	GCTAGC	1 cut(s)	827
NlaIII	CATG	8 cut(s)	36, 51, 319, 458, 953, 1010, 1182, 1304
NlaIV	GGNNCC	1 cut(s)	476
NmeAIII	GCCGAG	1 cut(s)	680
NmuCI	GTSAC	3 cut(s)	237, 363, 1119
NsiI	ATGCAT	1 cut(s)	456
NspI	RCATGY	1 cut(s)	51
PciI	ACATGT	1 cut(s)	47
PciSI	GCTCTTC	1 cut(s)	256
PfeI	GAWTC	5 cut(s)	63, 90, 1044, 1175, 1184
PflFI	GACNNNGTC	1 cut(s)	1035
PkrI	GCNGC	1 cut(s)	1025
PleI	GAGTC	3 cut(s)	352, 1026, 1116
PpsI	GAGTC	3 cut(s)	352, 1026, 1116
Ppu21I	YACGTR	1 cut(s)	849
PpuMI	RGGWCCY	1 cut(s)	1376
PscI	ACATGT	1 cut(s)	47
Psp124BI	GAGCTC	1 cut(s)	1014
Psp5II	RGGWCCY	1 cut(s)	1376
Psp6I	CCWGG	1 cut(s)	1378
PspFI	CCCAGC	1 cut(s)	184
PspGI	CCWGG	1 cut(s)	1378
PspN4I	GGNNCC	1 cut(s)	476
PspPI	GGNCC	3 cut(s)	278, 551, 1376
PspPPI	RGGWCCY	1 cut(s)	1376
PstNI	CAGNNNCTG	2 cut(s)	408, 860
PsyI	GACNNNGTC	1 cut(s)	1035
RsaI	GTAC	1 cut(s)	1005
RsaNI	GTAC	1 cut(s)	1004
SacI	GAGCTC	1 cut(s)	1014
SapI	GCTCTTC	1 cut(s)	256
SaqAI	TTAA	3 cut(s)	273, 616, 1399
SatI	GCNGC	1 cut(s)	1024
Sau96I	GGNCC	3 cut(s)	278, 551, 1376
SchI	GAGTC	3 cut(s)	352, 1026, 1116
ScrFI	CCNGG	1 cut(s)	1380
SduI	GDGCHC	3 cut(s)	338, 479, 1014
SfaNI	GCATC	7 cut(s)	218, 311, 688, 694, 1035, 1149, 1217
SfcI	CTRYAG	1 cut(s)	510
SinI	GGWCC	1 cut(s)	1376
SmlI	CTYRAG	2 cut(s)	624, 771
SmoI	CTYRAG	2 cut(s)	624, 771
SnaBI	TACGTA	1 cut(s)	849
SspI	AATATT	1 cut(s)	1089
SspMI	CTAG	5 cut(s)	18, 142, 355, 690, 828
SstI	GAGCTC	1 cut(s)	1014
StyD4I	CCNGG	1 cut(s)	1378
StyI	CCWWGG	1 cut(s)	1054
TaaI	ACNGT	4 cut(s)	271, 387, 762, 1432
TaiI	ACGT	1 cut(s)	851
TaqI	TCGA	2 cut(s)	66, 1211
TatI	WGTACW	1 cut(s)	1003
TfiI	GAWTC	5 cut(s)	63, 90, 1044, 1175, 1184
Tru1I	TTAA	3 cut(s)	273, 616, 1399
Tru9I	TTAA	3 cut(s)	273, 616, 1399
TseFI	GTSAC	3 cut(s)	237, 363, 1119
TseI	GCWGC	1 cut(s)	1023
Tsp45I	GTSAC	3 cut(s)	237, 363, 1119
TspDTI	ATGAA	9 cut(s)	238, 312, 313, 555, 916, 966, 994, 1147, 1176
TspGWI	ACGGA	2 cut(s)	823, 1329
Tth111I	GACNNNGTC	1 cut(s)	1035
VpaK11BI	GGWCC	1 cut(s)	1376
XagI	CCTNNNNNAGG	1 cut(s)	1383
XapI	RAATTY	2 cut(s)	515, 795
XceI	RCATGY	1 cut(s)	51
XmiI	GTMKAC	1 cut(s)	764
XspI	CTAG	5 cut(s)	18, 142, 355, 690, 828
Zsp2I	ATGCAT	1 cut(s)	456

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.