Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0019056

Physical Location & Seq

Genomic Coordinates Reverse (-)

16534438 .. 16535163

Gene Structure 726 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000007408

Sequence Viewer

CDS Protein Promoter (2k)

Length: 423 bp

ATGCCAAGGGCAAAGATAGTCAACAAGCTCAGCAAAAAAGCCGATCAAGTCCACGTTAACTGGCCTGAGCTCAACGACAACGATGACTTGAAGAAGTCGGCGTCGGTGTCTTCTATTCTGGCGTCGTCACTCGGGTTAAATAGGATAAAGACAAGATCGGGACAGCTGCTGAAGGAGAGCTTTTTCGGGTTTAGAGGAGACAAAGGCTCGGCGTTGGGGTTTAGTAATTTGTCAAAGCCTGTCGCTAATGACGGTAGTGCAGGGTTGAAGAAGAAGGAGGCTGCAGCGGCGAGTCTGAGTAGGACGGAGTTCAATGAGAGTGTGACAAGTGGGAGCTGGGTTGATAATAGCAGTAATTCAGATAGTATGTCAACTAGTAGTGTGCCTTCCAGAGACCAAAGCCCAAACATGCCTGTGCCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0046777 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

141

Amino Acids

14.9

Weight (kDa)

9.64

Isoelectric Point (pI)

42.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019056)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000007408
rosa_multiflora	Rmu_sc0028504.1_g000001
rosa_roxburghii	Rroxscaffold_5G00368250
rosa_samantha	Rh2AG153700 Rh2AG217900 Rh2BG159700 Rh2CG159300 Rh2DG159300 Rh2DG590200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	287
AcuI	CTGAAG	1 cut(s)	191
AcyI	GRCGYC	2 cut(s)	101, 122
AgsI	TTSAA	3 cut(s)	91, 268, 313
AhlI	ACTAGT	1 cut(s)	374
AluBI	AGCT	5 cut(s)	28, 70, 166, 180, 336
AluI	AGCT	5 cut(s)	28, 70, 166, 180, 336
Alw21I	GWGCWC	1 cut(s)	72
Alw26I	GTCTC	2 cut(s)	192, 387
AlwNI	CAGNNNCTG	1 cut(s)	169
Ama87I	CYCGRG	1 cut(s)	131
AoxI	GGCC	1 cut(s)	62
ApeKI	GCWGC	3 cut(s)	166, 281, 284
AvaI	CYCGRG	1 cut(s)	131
BanII	GRGCYC	1 cut(s)	72
BarI	GAAGNNNNNNTAC	2 cut(s)	370, 402
BbsI	GAAGAC	1 cut(s)	102
Bbv12I	GWGCWC	1 cut(s)	72
BbvI	GCAGC	3 cut(s)	153, 268, 296
BceAI	ACGGC	1 cut(s)	403
BcoDI	GTCTC	2 cut(s)	192, 387
BcuI	ACTAGT	1 cut(s)	374
BfaI	CTAG	1 cut(s)	375
BfmI	CTRYAG	1 cut(s)	282
BisI	GCNGC	4 cut(s)	167, 282, 285, 288
BlpI	GCTNAGC	1 cut(s)	29
BlsI	GCNGC	4 cut(s)	168, 283, 286, 289
BmeT110I	CYCGRG	1 cut(s)	131
BpiI	GAAGAC	1 cut(s)	102
Bpu10I	CCTNAGC	1 cut(s)	66
Bpu1102I	GCTNAGC	1 cut(s)	29
BsaHI	GRCGYC	2 cut(s)	101, 122
BsaI	GGTCTC	1 cut(s)	387
BsaJI	CCNNGG	1 cut(s)	5
Bse1I	ACTGG	1 cut(s)	65
BseDI	CCNNGG	1 cut(s)	5
BseMII	CTCAG	3 cut(s)	43, 57, 287
BseNI	ACTGG	1 cut(s)	65
BseRI	GAGGAG	1 cut(s)	210
BseXI	GCAGC	3 cut(s)	153, 268, 296
BseYI	CCCAGC	1 cut(s)	336
BsgI	GTGCAG	1 cut(s)	279
BshFI	GGCC	1 cut(s)	64
BsiHKAI	GWGCWC	1 cut(s)	72
BsiHKCI	CYCGRG	1 cut(s)	131
BslFI	GGGAC	1 cut(s)	174
BsmAI	GTCTC	2 cut(s)	192, 387
BsmFI	GGGAC	1 cut(s)	174
BsnI	GGCC	1 cut(s)	64
Bso31I	GGTCTC	1 cut(s)	387
BsoBI	CYCGRG	1 cut(s)	131
Bsp1286I	GDGCHC	1 cut(s)	72
Bsp143I	GATC	2 cut(s)	43, 155
Bsp1720I	GCTNAGC	1 cut(s)	29
BspACI	CCGC	1 cut(s)	287
BspANI	GGCC	1 cut(s)	64
BspCNI	CTCAG	3 cut(s)	42, 58, 288
BspMAI	CTGCAG	1 cut(s)	286
BspTNI	GGTCTC	1 cut(s)	387
BsrI	ACTGG	1 cut(s)	65
BssECI	CCNNGG	1 cut(s)	5
BssMI	GATC	2 cut(s)	43, 155
BssNI	GRCGYC	2 cut(s)	101, 122
BssT1I	CCWWGG	1 cut(s)	5
Bst4CI	ACNGT	1 cut(s)	254
BstACI	GRCGYC	2 cut(s)	101, 122
BstDEI	CTNAG	3 cut(s)	29, 66, 296
BstKTI	GATC	2 cut(s)	46, 158
BstMAI	GTCTC	2 cut(s)	192, 387
BstMBI	GATC	2 cut(s)	43, 155
BstMWI	GCNNNNNNNGC	1 cut(s)	287
BstNSI	RCATGY	1 cut(s)	412
BstSFI	CTRYAG	1 cut(s)	282
BstV1I	GCAGC	3 cut(s)	153, 268, 296
BstV2I	GAAGAC	1 cut(s)	102
BsuRI	GGCC	1 cut(s)	64
CaiI	CAGNNNCTG	1 cut(s)	169
CseI	GACGC	2 cut(s)	90, 111
CviAII	CATG	1 cut(s)	409
DdeI	CTNAG	3 cut(s)	29, 66, 296
DpnI	GATC	2 cut(s)	45, 157
DpnII	GATC	2 cut(s)	43, 155
Ecl136II	GAGCTC	1 cut(s)	70
Eco130I	CCWWGG	1 cut(s)	5
Eco24I	GRGCYC	1 cut(s)	72
Eco31I	GGTCTC	1 cut(s)	387
Eco53kI	GAGCTC	1 cut(s)	70
Eco57I	CTGAAG	1 cut(s)	191
Eco88I	CYCGRG	1 cut(s)	131
EcoICRI	GAGCTC	1 cut(s)	70
EcoT14I	CCWWGG	1 cut(s)	5
EcoT38I	GRGCYC	1 cut(s)	72
ErhI	CCWWGG	1 cut(s)	5
FaeI	CATG	1 cut(s)	412
FaiI	YATR	2 cut(s)	368, 410
FalI	AAGNNNNNCTT	2 cut(s)	164, 196
FaqI	GGGAC	1 cut(s)	174
FatI	CATG	1 cut(s)	408
Fnu4HI	GCNGC	4 cut(s)	167, 282, 285, 288
FriOI	GRGCYC	1 cut(s)	72
Fsp4HI	GCNGC	4 cut(s)	167, 282, 285, 288
FspBI	CTAG	1 cut(s)	375
GluI	GCNGC	4 cut(s)	167, 282, 285, 288
GsaI	CCCAGC	1 cut(s)	340
HaeIII	GGCC	1 cut(s)	64
HgaI	GACGC	2 cut(s)	90, 111
Hin1I	GRCGYC	2 cut(s)	101, 122
Hin1II	CATG	1 cut(s)	412
HincII	GTYRAC	3 cut(s)	22, 58, 372
HindII	GTYRAC	3 cut(s)	22, 58, 372
HinfI	GANTC	1 cut(s)	292
HpaI	GTTAAC	1 cut(s)	58
Hpy166II	GTNNAC	4 cut(s)	22, 52, 58, 372
Hpy188I	TCNGA	2 cut(s)	297, 361
Hpy188III	TCNNGA	2 cut(s)	159, 390
Hpy8I	GTNNAC	4 cut(s)	22, 52, 58, 372
Hpy99I	CGWCG	2 cut(s)	106, 127
HpyAV	CCTTC	3 cut(s)	166, 268, 396
HpyCH4III	ACNGT	1 cut(s)	254
HpyCH4IV	ACGT	1 cut(s)	54
HpyCH4V	TGCA	2 cut(s)	260, 284
HpyF10VI	GCNNNNNNNGC	1 cut(s)	287
HpyF3I	CTNAG	3 cut(s)	29, 66, 296
HpySE526I	ACGT	1 cut(s)	54
Hsp92I	GRCGYC	2 cut(s)	101, 122
Hsp92II	CATG	1 cut(s)	412
KspAI	GTTAAC	1 cut(s)	58
Kzo9I	GATC	2 cut(s)	43, 155
LmnI	GCTCC	1 cut(s)	333
LpnPI	CCDG	7 cut(s)	46, 78, 104, 246, 252, 322, 403
Lsp1109I	GCAGC	3 cut(s)	153, 268, 296
MaeI	CTAG	1 cut(s)	375
MaeII	ACGT	1 cut(s)	54
MaeIII	GTNAC	2 cut(s)	126, 322
MalI	GATC	2 cut(s)	45, 157
MboI	GATC	2 cut(s)	43, 155
MboII	GAAGA	4 cut(s)	102, 103, 280, 283
MhlI	GDGCHC	1 cut(s)	72
MluCI	AATT	2 cut(s)	226, 355
MlyI	GAGTC	1 cut(s)	301
MnlI	CCTC	2 cut(s)	188, 271
MseI	TTAA	2 cut(s)	57, 137
MslI	CAYNNNNRTG	1 cut(s)	413
MspA1I	CMGCKG	2 cut(s)	166, 287
MwoI	GCNNNNNNNGC	1 cut(s)	287
NdeII	GATC	2 cut(s)	43, 155
NlaIII	CATG	1 cut(s)	412
NmeAIII	GCCGAG	1 cut(s)	188
NmuCI	GTSAC	2 cut(s)	126, 322
NspI	RCATGY	1 cut(s)	412
PkrI	GCNGC	4 cut(s)	168, 283, 286, 289
PleI	GAGTC	1 cut(s)	300
PpsI	GAGTC	1 cut(s)	300
Psp124BI	GAGCTC	1 cut(s)	72
PspFI	CCCAGC	1 cut(s)	336
PstI	CTGCAG	1 cut(s)	286
PstNI	CAGNNNCTG	1 cut(s)	169
PvuII	CAGCTG	1 cut(s)	166
RseI	CAYNNNNRTG	1 cut(s)	413
SacI	GAGCTC	1 cut(s)	72
SaqAI	TTAA	2 cut(s)	57, 137
SatI	GCNGC	4 cut(s)	167, 282, 285, 288
Sau3AI	GATC	2 cut(s)	43, 155
SchI	GAGTC	1 cut(s)	301
SduI	GDGCHC	1 cut(s)	72
SetI	ASST	6 cut(s)	30, 57, 72, 168, 182, 338
SfcI	CTRYAG	1 cut(s)	282
SmiMI	CAYNNNNRTG	1 cut(s)	413
SpeI	ACTAGT	1 cut(s)	374
Sse9I	AATT	2 cut(s)	226, 355
SsiI	CCGC	1 cut(s)	287
SspMI	CTAG	1 cut(s)	375
SstI	GAGCTC	1 cut(s)	72
StyI	CCWWGG	1 cut(s)	5
TaaI	ACNGT	1 cut(s)	254
TaiI	ACGT	1 cut(s)	57
TasI	AATT	2 cut(s)	226, 355
TauI	GCSGC	1 cut(s)	290
Tru1I	TTAA	2 cut(s)	57, 137
Tru9I	TTAA	2 cut(s)	57, 137
TseFI	GTSAC	2 cut(s)	126, 322
TseI	GCWGC	3 cut(s)	166, 281, 284
Tsp45I	GTSAC	2 cut(s)	126, 322
TspGWI	ACGGA	1 cut(s)	320
XceI	RCATGY	1 cut(s)	412
XspI	CTAG	1 cut(s)	375

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.