Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0019056

Physical Location & Seq

Genomic Coordinates Forward (+)

13908696 .. 13909052

Gene Structure 357 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG159300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 357 bp

ATGGTGTTCGAGGGGAGGTTCTTCTCCTCCAAGAAATCAGACTCCTCCAACAATATTGATGGCTCCACCAACAACCCCCCATCGCTAGGCTTCTCCTCCCCAAGCAGATCTGATAAGAAGAAATCCAAATCCTCGCCAAAGATGATTCCAAAGTCGAGACTACAAGCTCCGACAACAGTAGCTGTGGAGGATTTGGCAAAAGGGACCCGGTTTAGGGGAGACAAAGGCACTGTGTTGGGGTCTAGTAATTTATCAAGGCCTGTCACTGGTGACGGTAATGCAGGGTTGAAGAAGAAGGAGGCTGCGACGGCGAATCTGAGCAGGACGGGGTTGTCACACTCTCATGGTTTCAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0046777 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

118

Amino Acids

12.48

Weight (kDa)

10.66

Isoelectric Point (pI)

46.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019056)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000007408
rosa_multiflora	Rmu_sc0028504.1_g000001
rosa_roxburghii	Rroxscaffold_5G00368250
rosa_samantha	Rh2AG153700 Rh2AG217900 Rh2BG159700 Rh2CG159300 Rh2DG159300 Rh2DG590200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	331
AfiI	CCNNNNNNNGG	4 cut(s)	86, 213, 214, 266
AgsI	TTSAA	1 cut(s)	289
AluBI	AGCT	2 cut(s)	167, 182
AluI	AGCT	2 cut(s)	167, 182
Alw26I	GTCTC	2 cut(s)	151, 213
AlwNI	CAGNNNCTG	1 cut(s)	182
AoxI	GGCC	1 cut(s)	257
ApeKI	GCWGC	1 cut(s)	302
AspS9I	GGNCC	1 cut(s)	204
AsuC2I	CCSGG	1 cut(s)	208
AsuHPI	GGTGA	1 cut(s)	281
AvaII	GGWCC	1 cut(s)	204
BbvI	GCAGC	1 cut(s)	289
BccI	CCATC	2 cut(s)	53, 88
BceAI	ACGGC	1 cut(s)	324
BcnI	CCSGG	1 cut(s)	208
BcoDI	GTCTC	2 cut(s)	151, 213
BfaI	CTAG	2 cut(s)	86, 243
BglII	AGATCT	1 cut(s)	107
BisI	GCNGC	1 cut(s)	303
BlsI	GCNGC	1 cut(s)	304
Bme1390I	CCNGG	1 cut(s)	208
Bme18I	GGWCC	1 cut(s)	204
BmgT120I	GGNCC	1 cut(s)	204
BmiI	GGNNCC	3 cut(s)	64, 205, 206
BmrFI	CCNGG	1 cut(s)	208
BpuMI	CCSGG	1 cut(s)	208
Bsc4I	CCNNNNNNNGG	4 cut(s)	86, 213, 214, 266
Bse1I	ACTGG	1 cut(s)	271
BseLI	CCNNNNNNNGG	4 cut(s)	86, 213, 214, 266
BseMII	CTCAG	1 cut(s)	308
BseNI	ACTGG	1 cut(s)	271
BseRI	GAGGAG	3 cut(s)	16, 34, 85
BseXI	GCAGC	1 cut(s)	289
BshFI	GGCC	1 cut(s)	259
BsiSI	CCGG	1 cut(s)	208
BslFI	GGGAC	1 cut(s)	217
BslI	CCNNNNNNNGG	4 cut(s)	86, 213, 214, 266
BsmAI	GTCTC	2 cut(s)	151, 213
BsmFI	GGGAC	1 cut(s)	217
BsnI	GGCC	1 cut(s)	259
Bsp143I	GATC	1 cut(s)	107
BspANI	GGCC	1 cut(s)	259
BspCNI	CTCAG	1 cut(s)	309
BspLI	GGNNCC	3 cut(s)	64, 205, 206
BsrI	ACTGG	1 cut(s)	271
BssMI	GATC	1 cut(s)	107
Bst4CI	ACNGT	3 cut(s)	178, 232, 275
BstDEI	CTNAG	1 cut(s)	317
BstKTI	GATC	1 cut(s)	110
BstMAI	GTCTC	2 cut(s)	151, 213
BstMBI	GATC	1 cut(s)	107
BstMWI	GCNNNNNNNGC	1 cut(s)	308
BstSCI	CCNGG	1 cut(s)	206
BstV1I	GCAGC	1 cut(s)	289
BstX2I	RGATCY	1 cut(s)	107
BstYI	RGATCY	1 cut(s)	107
BsuRI	GGCC	1 cut(s)	259
BtgZI	GCGATG	1 cut(s)	66
BtsIMutI	CAGTG	2 cut(s)	228, 264
CaiI	CAGNNNCTG	1 cut(s)	182
Cfr13I	GGNCC	1 cut(s)	204
CviAII	CATG	1 cut(s)	344
CviJI	RGCY	6 cut(s)	63, 90, 167, 182, 259, 302
CviKI_1	RGCY	6 cut(s)	63, 90, 167, 182, 259, 302
DdeI	CTNAG	1 cut(s)	317
DpnI	GATC	1 cut(s)	109
DpnII	GATC	1 cut(s)	107
DrdI	GACNNNNNNGTC	1 cut(s)	331
DseDI	GACNNNNNNGTC	1 cut(s)	331
Eco147I	AGGCCT	1 cut(s)	259
Eco47I	GGWCC	1 cut(s)	204
EcoO109I	RGGNCCY	1 cut(s)	204
FaeI	CATG	1 cut(s)	347
FaiI	YATR	1 cut(s)	345
FaqI	GGGAC	1 cut(s)	217
FatI	CATG	1 cut(s)	343
Fnu4HI	GCNGC	1 cut(s)	303
Fsp4HI	GCNGC	1 cut(s)	303
FspBI	CTAG	2 cut(s)	86, 243
GluI	GCNGC	1 cut(s)	303
HaeIII	GGCC	1 cut(s)	259
HapII	CCGG	1 cut(s)	208
Hin1II	CATG	1 cut(s)	347
HinfI	GANTC	3 cut(s)	41, 145, 313
HpaII	CCGG	1 cut(s)	208
HphI	GGTGA	1 cut(s)	281
Hpy188I	TCNGA	5 cut(s)	40, 112, 171, 318, 353
Hpy188III	TCNNGA	1 cut(s)	156
Hpy99I	CGWCG	1 cut(s)	310
HpyAV	CCTTC	1 cut(s)	289
HpyCH4III	ACNGT	3 cut(s)	178, 232, 275
HpyCH4V	TGCA	1 cut(s)	281
HpyF10VI	GCNNNNNNNGC	1 cut(s)	308
HpyF3I	CTNAG	1 cut(s)	317
Hsp92II	CATG	1 cut(s)	347
KflI	GGGWCCC	1 cut(s)	204
Kzo9I	GATC	1 cut(s)	107
LmnI	GCTCC	2 cut(s)	68, 172
LpnPI	CCDG	5 cut(s)	221, 252, 267, 273, 307
Lsp1109I	GCAGC	1 cut(s)	289
MaeI	CTAG	2 cut(s)	86, 243
MaeIII	GTNAC	3 cut(s)	262, 269, 333
MalI	GATC	1 cut(s)	109
MboI	GATC	1 cut(s)	107
MboII	GAAGA	4 cut(s)	13, 130, 301, 304
MflI	RGATCY	1 cut(s)	107
MluCI	AATT	1 cut(s)	247
MlyI	GAGTC	1 cut(s)	35
MmeI	TCCRAC	2 cut(s)	72, 194
MnlI	CCTC	8 cut(s)	4, 9, 37, 55, 106, 142, 181, 292
MslI	CAYNNNNRTG	1 cut(s)	342
MspI	CCGG	1 cut(s)	208
MspR9I	CCNGG	1 cut(s)	208
MwoI	GCNNNNNNNGC	1 cut(s)	308
NciI	CCSGG	1 cut(s)	208
NdeII	GATC	1 cut(s)	107
NlaIII	CATG	1 cut(s)	347
NlaIV	GGNNCC	3 cut(s)	64, 205, 206
NmuCI	GTSAC	3 cut(s)	262, 269, 333
PceI	AGGCCT	1 cut(s)	259
PfeI	GAWTC	2 cut(s)	145, 313
PkrI	GCNGC	1 cut(s)	304
PleI	GAGTC	1 cut(s)	35
PpsI	GAGTC	1 cut(s)	35
PpuMI	RGGWCCY	1 cut(s)	204
Psp5II	RGGWCCY	1 cut(s)	204
PspN4I	GGNNCC	3 cut(s)	64, 205, 206
PspPI	GGNCC	1 cut(s)	204
PspPPI	RGGWCCY	1 cut(s)	204
PstNI	CAGNNNCTG	1 cut(s)	182
PsuI	RGATCY	1 cut(s)	107
RseI	CAYNNNNRTG	1 cut(s)	342
SatI	GCNGC	1 cut(s)	303
Sau3AI	GATC	1 cut(s)	107
Sau96I	GGNCC	1 cut(s)	204
SchI	GAGTC	1 cut(s)	35
ScrFI	CCNGG	1 cut(s)	208
SetI	ASST	3 cut(s)	20, 169, 184
SinI	GGWCC	1 cut(s)	204
SmiMI	CAYNNNNRTG	1 cut(s)	342
Sse9I	AATT	1 cut(s)	247
SseBI	AGGCCT	1 cut(s)	259
SspI	AATATT	1 cut(s)	55
SspMI	CTAG	2 cut(s)	86, 243
StuI	AGGCCT	1 cut(s)	259
StyD4I	CCNGG	1 cut(s)	206
TaaI	ACNGT	3 cut(s)	178, 232, 275
TaqI	TCGA	2 cut(s)	9, 155
TasI	AATT	1 cut(s)	247
TfiI	GAWTC	2 cut(s)	145, 313
TscAI	CASTG	2 cut(s)	235, 271
TseFI	GTSAC	3 cut(s)	262, 269, 333
TseI	GCWGC	1 cut(s)	302
Tsp45I	GTSAC	3 cut(s)	262, 269, 333
TspRI	CASTG	2 cut(s)	235, 271
VpaK11BI	GGWCC	1 cut(s)	204
XspI	CTAG	2 cut(s)	86, 243

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.