Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0028504.1

Orthogroup ID

OG0019056

Physical Location & Seq

Genomic Coordinates Reverse (-)

248 .. 1132

Gene Structure 885 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0028504.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 885 bp

atggtgttcaaggggaggttcttctcctccaagaaatcagactcctccaacagtcctgatggctccaccaacagcccccgatcgctcggctccaactccccaagcagatccgataagaagaaatccaaatccgccgtcaaagacgactccaaagccgccactacaagctccgccgccgtctttggaggcggctctagtcggcaagcgcaagtcaaagacgggacgaagaagaaggacgccaaggggaaagacagtcaacacgcgcagccgaaaacgccgatcaagtccagcttagctggcctgagttcgacgacgacgacgactccgaagaaggcggccgcggtggagccggcgtcggtgtctcccattctggcatcgtcgctcgggttgaacaggataaagacgagatcggggccgctgccgcaggagagctttttcgggtttaggggagacaaaggctcggcgttggggtctagtaatttgtctaggcccggcgccggtgacggtagtgcagggttgaagaagaaggaggcggcggcgagtctgagcaggacggggttcaatgagagtgtgacaagtgggagctgggttgataatggcagtaattcggatagtatgtcaactggtagtgtgccttccagagaccaaagccctaacatgcctgcgccgccgtcgcgcttgcagaatggtggcgaatcctcggctgaagctggtattggttatgagcaatgcacagtgtttttttatgaatttatgccaatttcagtttatgatctagtaatgtggttactaaatggtagtgttttgagcttagtacataggaatcgcatggcattgaaacactctgataggcagtacccagtaaatcactttaactcgaactaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0046777 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

294

Amino Acids

30.8

Weight (kDa)

9.97

Isoelectric Point (pI)

50.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019056)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000007408
rosa_multiflora	Rmu_sc0028504.1_g000001
rosa_roxburghii	Rroxscaffold_5G00368250
rosa_samantha	Rh2AG153700 Rh2AG217900 Rh2BG159700 Rh2CG159300 Rh2DG159300 Rh2DG590200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	494
AccII	CGCG	3 cut(s)	263, 341, 676
AclWI	GGATC	1 cut(s)	102
AcoI	YGGCCR	1 cut(s)	336
AcsI	RAATTY	1 cut(s)	749
AcuI	CTGAAG	1 cut(s)	726
AcyI	GRCGYC	3 cut(s)	237, 353, 495
AfaI	GTAC	2 cut(s)	816, 857
AfiI	CCNNNNNNNGG	1 cut(s)	497
AgsI	TTSAA	5 cut(s)	10, 391, 520, 562, 838
AjuI	GAANNNNNNNTTGG	2 cut(s)	699, 731
AluBI	AGCT	7 cut(s)	168, 291, 296, 432, 585, 710, 810
AluI	AGCT	7 cut(s)	168, 291, 296, 432, 585, 710, 810
Alw26I	GTCTC	3 cut(s)	366, 444, 636
AlwI	GGATC	1 cut(s)	102
Ama87I	CYCGRG	1 cut(s)	383
AoxI	GGCC	4 cut(s)	298, 336, 413, 488
ApeKI	GCWGC	2 cut(s)	265, 418
ApoI	RAATTY	1 cut(s)	749
ArsI	GACNNNNNNTTYG	2 cut(s)	120, 152
AspLEI	GCGC	5 cut(s)	208, 265, 497, 667, 678
AspS9I	GGNCC	2 cut(s)	413, 489
AsuC2I	CCSGG	1 cut(s)	492
AsuHPI	GGTGA	1 cut(s)	512
AvaI	CYCGRG	1 cut(s)	383
BanI	GGYRCC	1 cut(s)	494
BarI	GAAGNNNNNNTAC	2 cut(s)	619, 651
BbvI	GCAGC	2 cut(s)	277, 405
BccI	CCATC	1 cut(s)	53
BceAI	ACGGC	3 cut(s)	119, 161, 655
BcnI	CCSGG	1 cut(s)	492
BcoDI	GTCTC	3 cut(s)	366, 444, 636
BfaI	CTAG	4 cut(s)	195, 474, 486, 776
BfoI	RGCGCY	1 cut(s)	498
BlpI	GCTNAGC	1 cut(s)	292
Bme1390I	CCNGG	1 cut(s)	492
BmeT110I	CYCGRG	1 cut(s)	383
BmgT120I	GGNCC	2 cut(s)	413, 489
BmiI	GGNNCC	5 cut(s)	64, 91, 348, 414, 496
BmrFI	CCNGG	1 cut(s)	492
BmrI	ACTGGG	1 cut(s)	854
BmsI	GCATC	1 cut(s)	383
BmuI	ACTGGG	1 cut(s)	854
Bpu1102I	GCTNAGC	1 cut(s)	292
BpuMI	CCSGG	1 cut(s)	492
BsaHI	GRCGYC	3 cut(s)	237, 353, 495
BsaI	GGTCTC	1 cut(s)	636
BsaJI	CCNNGG	3 cut(s)	240, 339, 699
BsaXI	ACNNNNNCTCC	4 cut(s)	307, 337, 338, 368
Bsc4I	CCNNNNNNNGG	1 cut(s)	497
Bse118I	RCCGGY	2 cut(s)	349, 497
Bse1I	ACTGG	2 cut(s)	628, 860
Bse3DI	GCAATG	1 cut(s)	734
BseDI	CCNNGG	3 cut(s)	240, 339, 699
BseLI	CCNNNNNNNGG	1 cut(s)	497
BseMI	GCAATG	1 cut(s)	734
BseMII	CTCAG	2 cut(s)	293, 536
BseNI	ACTGG	2 cut(s)	628, 860
BseRI	GAGGAG	2 cut(s)	16, 34
BseX3I	CGGCCG	1 cut(s)	336
BseXI	GCAGC	2 cut(s)	277, 405
BseYI	CCCAGC	1 cut(s)	585
BsgI	GTGCAG	1 cut(s)	531
Bsh1236I	CGCG	3 cut(s)	263, 341, 676
Bsh1285I	CGRYCG	2 cut(s)	83, 339
BshFI	GGCC	4 cut(s)	300, 338, 415, 490
BshNI	GGYRCC	1 cut(s)	494
BsiEI	CGRYCG	2 cut(s)	83, 339
BsiHKCI	CYCGRG	1 cut(s)	383
BsiSI	CCGG	3 cut(s)	350, 492, 498
BslFI	GGGAC	1 cut(s)	235
BslI	CCNNNNNNNGG	1 cut(s)	497
BsmAI	GTCTC	3 cut(s)	366, 444, 636
BsmFI	GGGAC	1 cut(s)	235
BsnI	GGCC	4 cut(s)	300, 338, 415, 490
Bso31I	GGTCTC	1 cut(s)	636
BsoBI	CYCGRG	1 cut(s)	383
Bsp143I	GATC	5 cut(s)	80, 107, 279, 407, 772
Bsp1720I	GCTNAGC	1 cut(s)	292
BspANI	GGCC	4 cut(s)	300, 338, 415, 490
BspCNI	CTCAG	2 cut(s)	294, 537
BspFNI	CGCG	3 cut(s)	263, 341, 676
BspLI	GGNNCC	5 cut(s)	64, 91, 348, 414, 496
BspPI	GGATC	1 cut(s)	102
BspT107I	GGYRCC	1 cut(s)	494
BspTNI	GGTCTC	1 cut(s)	636
BsrDI	GCAATG	1 cut(s)	734
BsrFI	RCCGGY	2 cut(s)	349, 497
BsrI	ACTGG	2 cut(s)	628, 860
BssAI	RCCGGY	2 cut(s)	349, 497
BssECI	CCNNGG	3 cut(s)	240, 339, 699
BssMI	GATC	5 cut(s)	80, 107, 279, 407, 772
BssNI	GRCGYC	3 cut(s)	237, 353, 495
BssT1I	CCWWGG	1 cut(s)	240
Bst4CI	ACNGT	4 cut(s)	53, 254, 506, 736
BstACI	GRCGYC	3 cut(s)	237, 353, 495
BstC8I	GCNNGC	5 cut(s)	204, 298, 351, 663, 680
BstDEI	CTNAG	4 cut(s)	292, 302, 545, 811
BstDSI	CCRYGG	1 cut(s)	339
BstFNI	CGCG	3 cut(s)	263, 341, 676
BstH2I	RGCGCY	1 cut(s)	498
BstHHI	GCGC	5 cut(s)	208, 265, 497, 667, 678
BstKTI	GATC	5 cut(s)	83, 110, 282, 410, 775
BstMAI	GTCTC	3 cut(s)	366, 444, 636
BstMBI	GATC	5 cut(s)	80, 107, 279, 407, 772
BstMCI	CGRYCG	2 cut(s)	83, 339
BstMWI	GCNNNNNNNGC	5 cut(s)	274, 297, 421, 667, 673
BstNSI	RCATGY	1 cut(s)	661
BstSCI	CCNGG	1 cut(s)	490
BstUI	CGCG	3 cut(s)	263, 341, 676
BstV1I	GCAGC	2 cut(s)	277, 405
BstX2I	RGATCY	1 cut(s)	107
BstYI	RGATCY	1 cut(s)	107
BstZI	CGGCCG	1 cut(s)	336
BsuRI	GGCC	4 cut(s)	300, 338, 415, 490
BtgI	CCRYGG	1 cut(s)	339
BtsIMutI	CAGTG	1 cut(s)	741
Cac8I	GCNNGC	5 cut(s)	204, 298, 351, 663, 680
CciNI	GCGGCCGC	1 cut(s)	336
CfoI	GCGC	5 cut(s)	208, 265, 497, 667, 678
Cfr10I	RCCGGY	2 cut(s)	349, 497
Cfr13I	GGNCC	2 cut(s)	413, 489
Cfr42I	CCGCGG	1 cut(s)	342
CseI	GACGC	2 cut(s)	245, 342
Csp6I	GTAC	2 cut(s)	815, 856
CviAII	CATG	2 cut(s)	658, 829
CviQI	GTAC	2 cut(s)	815, 856
DdeI	CTNAG	4 cut(s)	292, 302, 545, 811
DinI	GGCGCC	1 cut(s)	496
DpnI	GATC	5 cut(s)	82, 109, 281, 409, 774
DpnII	GATC	5 cut(s)	80, 107, 279, 407, 772
EaeI	YGGCCR	1 cut(s)	336
EagI	CGGCCG	1 cut(s)	336
EciI	GGCGGA	2 cut(s)	121, 160
EclXI	CGGCCG	1 cut(s)	336
Eco130I	CCWWGG	1 cut(s)	240
Eco31I	GGTCTC	1 cut(s)	636
Eco52I	CGGCCG	1 cut(s)	336
Eco57I	CTGAAG	1 cut(s)	726
Eco88I	CYCGRG	1 cut(s)	383
EcoT14I	CCWWGG	1 cut(s)	240
EgeI	GGCGCC	1 cut(s)	496
EheI	GGCGCC	1 cut(s)	496
ErhI	CCWWGG	1 cut(s)	240
FaeI	CATG	2 cut(s)	661, 832
FaiI	YATR	8 cut(s)	617, 659, 723, 747, 755, 771, 819, 830
FalI	AAGNNNNNCTT	2 cut(s)	275, 307
FaqI	GGGAC	1 cut(s)	235
FatI	CATG	2 cut(s)	657, 828
FspBI	CTAG	4 cut(s)	195, 474, 486, 776
GlaI	GCGC	5 cut(s)	207, 264, 496, 666, 677
GsaI	CCCAGC	1 cut(s)	589
HaeII	RGCGCY	1 cut(s)	498
HaeIII	GGCC	4 cut(s)	300, 338, 415, 490
HapII	CCGG	3 cut(s)	350, 492, 498
HgaI	GACGC	2 cut(s)	245, 342
HhaI	GCGC	5 cut(s)	208, 265, 497, 667, 678
Hin1I	GRCGYC	3 cut(s)	237, 353, 495
Hin1II	CATG	2 cut(s)	661, 832
Hin6I	GCGC	5 cut(s)	206, 263, 495, 665, 676
HinP1I	GCGC	5 cut(s)	206, 263, 495, 665, 676
HincII	GTYRAC	2 cut(s)	257, 621
HindII	GTYRAC	2 cut(s)	257, 621
HinfI	GANTC	6 cut(s)	41, 146, 322, 541, 695, 823
HpaII	CCGG	3 cut(s)	350, 492, 498
HphI	GGTGA	1 cut(s)	512
Hpy166II	GTNNAC	2 cut(s)	257, 621
Hpy188I	TCNGA	6 cut(s)	40, 112, 327, 546, 610, 847
Hpy188III	TCNNGA	2 cut(s)	56, 639
Hpy8I	GTNNAC	2 cut(s)	257, 621
Hpy99I	CGWCG	7 cut(s)	313, 316, 319, 322, 358, 382, 676
HpyAV	CCTTC	4 cut(s)	226, 325, 520, 645
HpyCH4III	ACNGT	4 cut(s)	53, 254, 506, 736
HpyCH4V	TGCA	3 cut(s)	512, 682, 732
HpyF10VI	GCNNNNNNNGC	5 cut(s)	274, 297, 421, 667, 673
HpyF3I	CTNAG	4 cut(s)	292, 302, 545, 811
Hsp92I	GRCGYC	3 cut(s)	237, 353, 495
Hsp92II	CATG	2 cut(s)	661, 832
HspAI	GCGC	5 cut(s)	206, 263, 495, 665, 676
KasI	GGCGCC	1 cut(s)	494
KroI	GCCGGC	1 cut(s)	349
KroNI	GCCGGC	1 cut(s)	351
KspI	CCGCGG	1 cut(s)	342
Kzo9I	GATC	5 cut(s)	80, 107, 279, 407, 772
LmnI	GCTCC	5 cut(s)	68, 95, 173, 346, 582
Lsp1109I	GCAGC	2 cut(s)	277, 405
LweI	GCATC	1 cut(s)	383
MaeI	CTAG	4 cut(s)	195, 474, 486, 776
MaeIII	GTNAC	3 cut(s)	500, 571, 786
MalI	GATC	5 cut(s)	82, 109, 281, 409, 774
MboI	GATC	5 cut(s)	80, 107, 279, 407, 772
MboII	GAAGA	7 cut(s)	13, 130, 238, 241, 340, 532, 535
MflI	RGATCY	1 cut(s)	107
MluCI	AATT	4 cut(s)	478, 604, 749, 759
Mly113I	GGCGCC	1 cut(s)	495
MlyI	GAGTC	4 cut(s)	35, 140, 316, 550
MmeI	TCCRAC	2 cut(s)	72, 117
MnlI	CCTC	6 cut(s)	9, 37, 55, 179, 523, 709
MroNI	GCCGGC	1 cut(s)	349
MseI	TTAA	1 cut(s)	873
MspA1I	CMGCKG	2 cut(s)	341, 418
MspI	CCGG	3 cut(s)	350, 492, 498
MspR9I	CCNGG	1 cut(s)	492
MvnI	CGCG	3 cut(s)	263, 341, 676
MwoI	GCNNNNNNNGC	5 cut(s)	274, 297, 421, 667, 673
NaeI	GCCGGC	1 cut(s)	351
NarI	GGCGCC	1 cut(s)	495
NciI	CCSGG	1 cut(s)	492
NdeII	GATC	5 cut(s)	80, 107, 279, 407, 772
NgoMIV	GCCGGC	1 cut(s)	349
NlaIII	CATG	2 cut(s)	661, 832
NlaIV	GGNNCC	5 cut(s)	64, 91, 348, 414, 496
NmeAIII	GCCGAG	3 cut(s)	66, 440, 680
NmuCI	GTSAC	2 cut(s)	500, 571
NotI	GCGGCCGC	1 cut(s)	336
NspI	RCATGY	1 cut(s)	661
PcsI	WCGNNNNNNNCGW	3 cut(s)	314, 317, 323
PdiI	GCCGGC	1 cut(s)	351
PfeI	GAWTC	2 cut(s)	695, 823
Ple19I	CGATCG	1 cut(s)	83
PleI	GAGTC	4 cut(s)	35, 140, 316, 549
PluTI	GGCGCC	1 cut(s)	498
PpsI	GAGTC	4 cut(s)	35, 140, 316, 549
PspFI	CCCAGC	1 cut(s)	585
PspN4I	GGNNCC	5 cut(s)	64, 91, 348, 414, 496
PspPI	GGNCC	2 cut(s)	413, 489
PsuI	RGATCY	1 cut(s)	107
PvuI	CGATCG	1 cut(s)	83
RsaI	GTAC	2 cut(s)	816, 857
RsaNI	GTAC	2 cut(s)	815, 856
SacII	CCGCGG	1 cut(s)	342
SaqAI	TTAA	1 cut(s)	873
Sau3AI	GATC	5 cut(s)	80, 107, 279, 407, 772
Sau96I	GGNCC	2 cut(s)	413, 489
SchI	GAGTC	4 cut(s)	35, 140, 316, 550
ScrFI	CCNGG	1 cut(s)	492
SetI	ASST	8 cut(s)	20, 170, 293, 298, 434, 587, 712, 812
SfaNI	GCATC	1 cut(s)	383
SfoI	GGCGCC	1 cut(s)	496
Sfr303I	CCGCGG	1 cut(s)	342
SgrAI	CRCCGGYG	1 cut(s)	497
SgrBI	CCGCGG	1 cut(s)	342
Sse9I	AATT	4 cut(s)	478, 604, 749, 759
SspDI	GGCGCC	1 cut(s)	494
SspMI	CTAG	4 cut(s)	195, 474, 486, 776
StyD4I	CCNGG	1 cut(s)	490
StyI	CCWWGG	1 cut(s)	240
TaaI	ACNGT	4 cut(s)	53, 254, 506, 736
TaqI	TCGA	2 cut(s)	308, 878
TasI	AATT	4 cut(s)	478, 604, 749, 759
TatI	WGTACW	1 cut(s)	814
TfiI	GAWTC	2 cut(s)	695, 823
Tru1I	TTAA	1 cut(s)	873
Tru9I	TTAA	1 cut(s)	873
TscAI	CASTG	1 cut(s)	741
TseFI	GTSAC	2 cut(s)	500, 571
TseI	GCWGC	2 cut(s)	265, 418
Tsp45I	GTSAC	2 cut(s)	500, 571
TspDTI	ATGAA	1 cut(s)	762
TspRI	CASTG	1 cut(s)	741
XapI	RAATTY	1 cut(s)	749
XceI	RCATGY	1 cut(s)	661
XspI	CTAG	4 cut(s)	195, 474, 486, 776

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.