Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0019056

Physical Location & Seq

Genomic Coordinates Forward (+)

14189319 .. 14189675

Gene Structure 357 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG153700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 357 bp

ATGGTGTGCGAGGGGAGGTTCTTCTCCTCCAAGAAATCAGACTCCTCCAACAATATTGATGGCTCCACCAACAGCCCCCCATCGCTAGGCTTCACCTCCCCAAGCAGATATGATAAGAAGAAATCCAAATCCTCGTCAAAGATGACTCCAAAGTCGAGACTACAAGCTCCGGCGGCAGTAGCTGTGGAGGATTTGGCAAAAGGGACCCAGTTTAGGGGAGACAAAGGCACTGTGTTGGGGTCTAGTAATTTATCAAGGCCTGTCACCGGTGACGGTAATGCAGGGTTGAAGAAGAAGGAGGCTGCGACGGCGAATCTGAGCAGGACGGGGTTGTCATACTCTCATGGTTTCGGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0046777 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

118

Amino Acids

12.32

Weight (kDa)

10.06

Isoelectric Point (pI)

45.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019056)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000007408
rosa_multiflora	Rmu_sc0028504.1_g000001
rosa_roxburghii	Rroxscaffold_5G00368250
rosa_samantha	Rh2AG153700 Rh2AG217900 Rh2BG159700 Rh2CG159300 Rh2DG159300 Rh2DG590200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	151, 331
AciI	CCGC	1 cut(s)	173
AfiI	CCNNNNNNNGG	4 cut(s)	86, 213, 214, 266
AgeI	ACCGGT	1 cut(s)	266
AgsI	TTSAA	1 cut(s)	289
AluBI	AGCT	2 cut(s)	167, 182
AluI	AGCT	2 cut(s)	167, 182
Alw26I	GTCTC	2 cut(s)	151, 213
AlwNI	CAGNNNCTG	1 cut(s)	182
AoxI	GGCC	1 cut(s)	257
ApeKI	GCWGC	1 cut(s)	302
AsiGI	ACCGGT	1 cut(s)	266
AspS9I	GGNCC	1 cut(s)	204
AsuHPI	GGTGA	3 cut(s)	85, 256, 281
AvaII	GGWCC	1 cut(s)	204
BbvI	GCAGC	1 cut(s)	289
BccI	CCATC	2 cut(s)	53, 88
BceAI	ACGGC	1 cut(s)	324
BcoDI	GTCTC	2 cut(s)	151, 213
BfaI	CTAG	2 cut(s)	86, 243
BisI	GCNGC	2 cut(s)	174, 303
BlsI	GCNGC	2 cut(s)	175, 304
Bme18I	GGWCC	1 cut(s)	204
BmgT120I	GGNCC	1 cut(s)	204
BmiI	GGNNCC	3 cut(s)	64, 205, 206
BmrI	ACTGGG	1 cut(s)	202
BmuI	ACTGGG	1 cut(s)	202
BsaWI	WCCGGW	1 cut(s)	266
Bsc4I	CCNNNNNNNGG	4 cut(s)	86, 213, 214, 266
Bse118I	RCCGGY	1 cut(s)	266
Bse1I	ACTGG	1 cut(s)	208
BseLI	CCNNNNNNNGG	4 cut(s)	86, 213, 214, 266
BseMII	CTCAG	1 cut(s)	308
BseNI	ACTGG	1 cut(s)	208
BseRI	GAGGAG	2 cut(s)	16, 34
BseXI	GCAGC	1 cut(s)	289
BshFI	GGCC	1 cut(s)	259
BshTI	ACCGGT	1 cut(s)	266
BsiSI	CCGG	2 cut(s)	170, 267
BslFI	GGGAC	1 cut(s)	217
BslI	CCNNNNNNNGG	4 cut(s)	86, 213, 214, 266
BsmAI	GTCTC	2 cut(s)	151, 213
BsmFI	GGGAC	1 cut(s)	217
BsnI	GGCC	1 cut(s)	259
BspACI	CCGC	1 cut(s)	173
BspANI	GGCC	1 cut(s)	259
BspCNI	CTCAG	1 cut(s)	309
BspLI	GGNNCC	3 cut(s)	64, 205, 206
BsrFI	RCCGGY	1 cut(s)	266
BsrI	ACTGG	1 cut(s)	208
BssAI	RCCGGY	1 cut(s)	266
Bst4CI	ACNGT	2 cut(s)	232, 275
BstDEI	CTNAG	1 cut(s)	317
BstMAI	GTCTC	2 cut(s)	151, 213
BstMWI	GCNNNNNNNGC	3 cut(s)	173, 179, 308
BstV1I	GCAGC	1 cut(s)	289
BsuRI	GGCC	1 cut(s)	259
BtgZI	GCGATG	1 cut(s)	66
BtsIMutI	CAGTG	1 cut(s)	228
CaiI	CAGNNNCTG	1 cut(s)	182
Cfr10I	RCCGGY	1 cut(s)	266
Cfr13I	GGNCC	1 cut(s)	204
CspAI	ACCGGT	1 cut(s)	266
CviAII	CATG	1 cut(s)	344
CviJI	RGCY	7 cut(s)	63, 75, 90, 167, 182, 259, 302
CviKI_1	RGCY	7 cut(s)	63, 75, 90, 167, 182, 259, 302
DdeI	CTNAG	1 cut(s)	317
DrdI	GACNNNNNNGTC	2 cut(s)	151, 331
DseDI	GACNNNNNNGTC	2 cut(s)	151, 331
Eco147I	AGGCCT	1 cut(s)	259
Eco47I	GGWCC	1 cut(s)	204
EcoO109I	RGGNCCY	1 cut(s)	204
FaeI	CATG	1 cut(s)	347
FaiI	YATR	3 cut(s)	111, 337, 345
FaqI	GGGAC	1 cut(s)	217
FatI	CATG	1 cut(s)	343
Fnu4HI	GCNGC	2 cut(s)	174, 303
Fsp4HI	GCNGC	2 cut(s)	174, 303
FspBI	CTAG	2 cut(s)	86, 243
GluI	GCNGC	2 cut(s)	174, 303
HaeIII	GGCC	1 cut(s)	259
HapII	CCGG	2 cut(s)	170, 267
Hin1II	CATG	1 cut(s)	347
HinfI	GANTC	3 cut(s)	41, 145, 313
HpaII	CCGG	2 cut(s)	170, 267
HphI	GGTGA	3 cut(s)	85, 256, 281
Hpy188I	TCNGA	3 cut(s)	40, 318, 353
Hpy188III	TCNNGA	1 cut(s)	156
Hpy99I	CGWCG	1 cut(s)	310
HpyAV	CCTTC	1 cut(s)	289
HpyCH4III	ACNGT	2 cut(s)	232, 275
HpyCH4V	TGCA	1 cut(s)	281
HpyF10VI	GCNNNNNNNGC	3 cut(s)	173, 179, 308
HpyF3I	CTNAG	1 cut(s)	317
Hsp92II	CATG	1 cut(s)	347
KflI	GGGWCCC	1 cut(s)	204
LmnI	GCTCC	2 cut(s)	68, 172
LpnPI	CCDG	6 cut(s)	183, 221, 267, 273, 280, 307
Lsp1109I	GCAGC	1 cut(s)	289
MaeI	CTAG	2 cut(s)	86, 243
MaeIII	GTNAC	2 cut(s)	262, 269
MboII	GAAGA	4 cut(s)	13, 130, 301, 304
MluCI	AATT	1 cut(s)	247
MlyI	GAGTC	2 cut(s)	35, 139
MmeI	TCCRAC	1 cut(s)	72
MnlI	CCTC	8 cut(s)	4, 9, 37, 55, 106, 142, 181, 292
MspI	CCGG	2 cut(s)	170, 267
MwoI	GCNNNNNNNGC	3 cut(s)	173, 179, 308
NlaIII	CATG	1 cut(s)	347
NlaIV	GGNNCC	3 cut(s)	64, 205, 206
NmuCI	GTSAC	2 cut(s)	262, 269
PceI	AGGCCT	1 cut(s)	259
PfeI	GAWTC	1 cut(s)	313
PinAI	ACCGGT	1 cut(s)	266
PkrI	GCNGC	2 cut(s)	175, 304
PleI	GAGTC	2 cut(s)	35, 139
PpsI	GAGTC	2 cut(s)	35, 139
PpuMI	RGGWCCY	1 cut(s)	204
Psp5II	RGGWCCY	1 cut(s)	204
PspN4I	GGNNCC	3 cut(s)	64, 205, 206
PspPI	GGNCC	1 cut(s)	204
PspPPI	RGGWCCY	1 cut(s)	204
PstNI	CAGNNNCTG	1 cut(s)	182
SatI	GCNGC	2 cut(s)	174, 303
Sau96I	GGNCC	1 cut(s)	204
SchI	GAGTC	2 cut(s)	35, 139
SetI	ASST	4 cut(s)	20, 98, 169, 184
SgrAI	CRCCGGYG	1 cut(s)	266
SinI	GGWCC	1 cut(s)	204
Sse9I	AATT	1 cut(s)	247
SseBI	AGGCCT	1 cut(s)	259
SsiI	CCGC	1 cut(s)	173
SspI	AATATT	1 cut(s)	55
SspMI	CTAG	2 cut(s)	86, 243
StuI	AGGCCT	1 cut(s)	259
TaaI	ACNGT	2 cut(s)	232, 275
TaqI	TCGA	1 cut(s)	155
TasI	AATT	1 cut(s)	247
TauI	GCSGC	1 cut(s)	176
TfiI	GAWTC	1 cut(s)	313
TscAI	CASTG	1 cut(s)	235
TseFI	GTSAC	2 cut(s)	262, 269
TseI	GCWGC	1 cut(s)	302
Tsp45I	GTSAC	2 cut(s)	262, 269
TspRI	CASTG	1 cut(s)	235
VpaK11BI	GGWCC	1 cut(s)	204
XspI	CTAG	2 cut(s)	86, 243

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.