Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0019056

Physical Location & Seq

Genomic Coordinates Forward (+)

82321496 .. 82322600

Gene Structure 1105 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG590200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 444 bp

ATGGTGTTCAAGGGGAGGTTTTTCTCCCCCAAGAAATCAGACTTCTCCAACAATCCTAATGTCAACAGCCCCCGATCGCTCGACTTCAACTCCCCAAGCAGATCCTATAAGAAGAAATCCAAATCCGCAGTCAAAGACGACTCTAAAGCCGCAACTACAAGCTTCGGTGGCGGCGGCGGAGGATTTGACCCAGTTGATCAAACCCTAGCAACCATCCTCATCCTCAGGCCTCCTCAACCAGATACCCCATCTCTTCTACCCCAAAGTCATCGTCGCCATGACCCGCGCCGTCTCCGACGTCTCCCAGACCCTCTCTATCCTCAACGCCCTCGGCGACTGCCCCGACCACGAGGCCTTCGACACCGCCAAGGCCAAGCTCGCTCACAACAAGCCCACTCCCTCCAAGAAGCTCAAGGACCTCGTCCTCTTCCCCCGCCCCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0046777 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

147

Amino Acids

16.5

Weight (kDa)

11.69

Isoelectric Point (pI)

84.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019056)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000007408
rosa_multiflora	Rmu_sc0028504.1_g000001
rosa_roxburghii	Rroxscaffold_5G00368250
rosa_samantha	Rh2AG153700 Rh2AG217900 Rh2BG159700 Rh2CG159300 Rh2DG159300 Rh2DG590200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	301
AccII	CGCG	1 cut(s)	286
AciI	CCGC	8 cut(s)	126, 150, 171, 174, 177, 284, 364, 434
AclWI	GGATC	1 cut(s)	96
AcyI	GRCGYC	1 cut(s)	298
AgsI	TTSAA	2 cut(s)	10, 88
AluBI	AGCT	3 cut(s)	162, 377, 410
AluI	AGCT	3 cut(s)	162, 377, 410
Alw26I	GTCTC	2 cut(s)	296, 305
AlwI	GGATC	1 cut(s)	96
AoxI	GGCC	3 cut(s)	227, 352, 370
ArsI	GACNNNNNNTTYG	4 cut(s)	114, 146, 256, 288
AspLEI	GCGC	1 cut(s)	288
AspS9I	GGNCC	1 cut(s)	416
AvaII	GGWCC	1 cut(s)	416
AxyI	CCTNAGG	1 cut(s)	224
BauI	CACGAG	1 cut(s)	348
BccI	CCATC	2 cut(s)	221, 256
BceAI	ACGGC	1 cut(s)	273
BclI	TGATCA	1 cut(s)	196
BcoDI	GTCTC	2 cut(s)	296, 305
BfaI	CTAG	1 cut(s)	206
BisI	GCNGC	3 cut(s)	150, 172, 175
BlsI	GCNGC	3 cut(s)	151, 173, 176
Bme18I	GGWCC	1 cut(s)	416
BmgT120I	GGNCC	1 cut(s)	416
BmrI	ACTGGG	1 cut(s)	185
BmuI	ACTGGG	1 cut(s)	185
BpuEI	CTTGAG	1 cut(s)	396
BsaHI	GRCGYC	1 cut(s)	298
BsaJI	CCNNGG	2 cut(s)	329, 367
BsaXI	ACNNNNNCTCC	2 cut(s)	74, 104
Bse1I	ACTGG	1 cut(s)	191
Bse21I	CCTNAGG	1 cut(s)	224
BseDI	CCNNGG	2 cut(s)	329, 367
BseGI	GGATG	2 cut(s)	213, 219
BseMII	CTCAG	1 cut(s)	238
BseNI	ACTGG	1 cut(s)	191
BseRI	GAGGAG	1 cut(s)	222
Bsh1236I	CGCG	1 cut(s)	286
Bsh1285I	CGRYCG	1 cut(s)	77
BshFI	GGCC	3 cut(s)	229, 354, 372
BsiEI	CGRYCG	1 cut(s)	77
BsmAI	GTCTC	2 cut(s)	296, 305
BsmBI	CGTCTC	2 cut(s)	296, 305
BsnI	GGCC	3 cut(s)	229, 354, 372
Bsp143I	GATC	3 cut(s)	74, 101, 196
BspACI	CCGC	8 cut(s)	126, 150, 171, 174, 177, 284, 364, 434
BspANI	GGCC	3 cut(s)	229, 354, 372
BspCNI	CTCAG	1 cut(s)	237
BspFNI	CGCG	1 cut(s)	286
BspPI	GGATC	1 cut(s)	96
BsrI	ACTGG	1 cut(s)	191
BssECI	CCNNGG	2 cut(s)	329, 367
BssMI	GATC	3 cut(s)	74, 101, 196
BssNI	GRCGYC	1 cut(s)	298
BssSI	CACGAG	1 cut(s)	348
BssT1I	CCWWGG	1 cut(s)	367
Bst2BI	CACGAG	1 cut(s)	348
Bst6I	CTCTTC	2 cut(s)	258, 432
BstACI	GRCGYC	1 cut(s)	298
BstC8I	GCNNGC	1 cut(s)	379
BstDEI	CTNAG	1 cut(s)	224
BstF5I	GGATG	2 cut(s)	213, 219
BstFNI	CGCG	1 cut(s)	286
BstHHI	GCGC	1 cut(s)	288
BstKTI	GATC	3 cut(s)	77, 104, 199
BstMAI	GTCTC	2 cut(s)	296, 305
BstMBI	GATC	3 cut(s)	74, 101, 196
BstMCI	CGRYCG	1 cut(s)	77
BstMWI	GCNNNNNNNGC	2 cut(s)	168, 378
BstUI	CGCG	1 cut(s)	286
BstX2I	RGATCY	1 cut(s)	101
BstYI	RGATCY	1 cut(s)	101
Bsu36I	CCTNAGG	1 cut(s)	224
BsuRI	GGCC	3 cut(s)	229, 354, 372
BtsCI	GGATG	2 cut(s)	213, 219
Cac8I	GCNNGC	1 cut(s)	379
CfoI	GCGC	1 cut(s)	288
Cfr13I	GGNCC	1 cut(s)	416
CviAII	CATG	1 cut(s)	278
CviJI	RGCY	9 cut(s)	69, 149, 162, 229, 354, 372, 377, 392, 410
CviKI_1	RGCY	9 cut(s)	69, 149, 162, 229, 354, 372, 377, 392, 410
DdeI	CTNAG	1 cut(s)	224
DpnI	GATC	3 cut(s)	76, 103, 198
DpnII	GATC	3 cut(s)	74, 101, 196
Eam1104I	CTCTTC	2 cut(s)	258, 432
EarI	CTCTTC	2 cut(s)	258, 432
EciI	GGCGGA	1 cut(s)	192
Eco130I	CCWWGG	1 cut(s)	367
Eco147I	AGGCCT	2 cut(s)	229, 354
Eco47I	GGWCC	1 cut(s)	416
Eco81I	CCTNAGG	1 cut(s)	224
EcoO109I	RGGNCCY	1 cut(s)	416
EcoT14I	CCWWGG	1 cut(s)	367
ErhI	CCWWGG	1 cut(s)	367
Esp3I	CGTCTC	2 cut(s)	296, 305
FaeI	CATG	1 cut(s)	281
FaiI	YATR	2 cut(s)	108, 279
FatI	CATG	1 cut(s)	277
FauI	CCCGC	2 cut(s)	291, 441
FbaI	TGATCA	1 cut(s)	196
Fnu4HI	GCNGC	3 cut(s)	150, 172, 175
FokI	GGATG	2 cut(s)	200, 206
Fsp4HI	GCNGC	3 cut(s)	150, 172, 175
FspBI	CTAG	1 cut(s)	206
GlaI	GCGC	1 cut(s)	287
GluI	GCNGC	3 cut(s)	150, 172, 175
HaeIII	GGCC	3 cut(s)	229, 354, 372
HhaI	GCGC	1 cut(s)	288
Hin1I	GRCGYC	1 cut(s)	298
Hin1II	CATG	1 cut(s)	281
Hin6I	GCGC	1 cut(s)	286
HinP1I	GCGC	1 cut(s)	286
HincII	GTYRAC	1 cut(s)	64
HindII	GTYRAC	1 cut(s)	64
HindIII	AAGCTT	1 cut(s)	160
HinfI	GANTC	1 cut(s)	140
Hpy166II	GTNNAC	1 cut(s)	64
Hpy188I	TCNGA	3 cut(s)	40, 296, 443
Hpy8I	GTNNAC	1 cut(s)	64
Hpy99I	CGWCG	2 cut(s)	276, 300
HpyAV	CCTTC	1 cut(s)	365
HpyCH4IV	ACGT	1 cut(s)	298
HpyF10VI	GCNNNNNNNGC	2 cut(s)	168, 378
HpyF3I	CTNAG	1 cut(s)	224
HpySE526I	ACGT	1 cut(s)	298
Hsp92I	GRCGYC	1 cut(s)	298
Hsp92II	CATG	1 cut(s)	281
HspAI	GCGC	1 cut(s)	286
Ksp22I	TGATCA	1 cut(s)	196
Kzo9I	GATC	3 cut(s)	74, 101, 196
LpnPI	CCDG	4 cut(s)	204, 211, 252, 318
MaeI	CTAG	1 cut(s)	206
MaeII	ACGT	1 cut(s)	298
MalI	GATC	3 cut(s)	76, 103, 198
MboI	GATC	3 cut(s)	74, 101, 196
MboII	GAAGA	3 cut(s)	124, 245, 419
MflI	RGATCY	1 cut(s)	101
MlyI	GAGTC	1 cut(s)	134
MmeI	TCCRAC	2 cut(s)	72, 319
MvnI	CGCG	1 cut(s)	286
MwoI	GCNNNNNNNGC	2 cut(s)	168, 378
NdeII	GATC	3 cut(s)	74, 101, 196
NlaIII	CATG	1 cut(s)	281
NmeAIII	GCCGAG	1 cut(s)	310
PceI	AGGCCT	2 cut(s)	229, 354
PcsI	WCGNNNNNNNCGW	2 cut(s)	331, 355
PflFI	GACNNNGTC	1 cut(s)	420
PkrI	GCNGC	3 cut(s)	151, 173, 176
Ple19I	CGATCG	1 cut(s)	77
PleI	GAGTC	1 cut(s)	134
PpsI	GAGTC	1 cut(s)	134
PpuMI	RGGWCCY	1 cut(s)	416
Psp5II	RGGWCCY	1 cut(s)	416
PspPI	GGNCC	1 cut(s)	416
PspPPI	RGGWCCY	1 cut(s)	416
PsuI	RGATCY	1 cut(s)	101
PsyI	GACNNNGTC	1 cut(s)	420
PvuI	CGATCG	1 cut(s)	77
SatI	GCNGC	3 cut(s)	150, 172, 175
Sau3AI	GATC	3 cut(s)	74, 101, 196
Sau96I	GGNCC	1 cut(s)	416
SchI	GAGTC	1 cut(s)	134
SetI	ASST	6 cut(s)	20, 164, 301, 379, 412, 421
SinI	GGWCC	1 cut(s)	416
SmlI	CTYRAG	1 cut(s)	411
SmoI	CTYRAG	1 cut(s)	411
SseBI	AGGCCT	2 cut(s)	229, 354
SsiI	CCGC	8 cut(s)	126, 150, 171, 174, 177, 284, 364, 434
SspMI	CTAG	1 cut(s)	206
StuI	AGGCCT	2 cut(s)	229, 354
StyI	CCWWGG	1 cut(s)	367
TaiI	ACGT	1 cut(s)	301
TaqI	TCGA	2 cut(s)	81, 358
TauI	GCSGC	3 cut(s)	152, 174, 177
Tth111I	GACNNNGTC	1 cut(s)	420
VpaK11BI	GGWCC	1 cut(s)	416
XspI	CTAG	1 cut(s)	206
ZraI	GACGTC	1 cut(s)	299

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.