Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0019056

Physical Location & Seq

Genomic Coordinates Reverse (-)

22258211 .. 22283992

Gene Structure 25782 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG217900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 324 bp

ATGGTGTTCGAGGGGAGGTTCTTCTCCCCCAAGAAATCAGACTTCTCCAATAGTCCTGATGTCTCCACCAACACCCCCCGATCGCTTGACTTCAACTCCCCAAGCAGATCCGATAAGAAGAAATCCAAATCCGCAGTCAAAGACGACTCCAAAGCTGCAACTACAAGCTTCGGTGGCGGCAGCGGAGGATTTGGCCCAGTTGATCAAACCCCAGCAACCATCCTCATCCTTAGGCCTCCTCAACTAGATACCCCACCTCTTCGACCCCAAAGTCATCGCCGCCATGACCCGCACCTGGGTTCAATTCGGTACAAGAACCCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0046777 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

107

Amino Acids

11.68

Weight (kDa)

10.16

Isoelectric Point (pI)

62.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019056)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000007408
rosa_multiflora	Rmu_sc0028504.1_g000001
rosa_roxburghii	Rroxscaffold_5G00368250
rosa_samantha	Rh2AG153700 Rh2AG217900 Rh2BG159700 Rh2CG159300 Rh2DG159300 Rh2DG590200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	270
AciI	CCGC	5 cut(s)	132, 177, 183, 280, 290
AclWI	GGATC	1 cut(s)	102
AfaI	GTAC	1 cut(s)	311
AfiI	CCNNNNNNNGG	2 cut(s)	295, 296
AgsI	TTSAA	2 cut(s)	94, 303
AjnI	CCWGG	1 cut(s)	294
AluBI	AGCT	2 cut(s)	155, 168
AluI	AGCT	2 cut(s)	155, 168
Alw26I	GTCTC	1 cut(s)	67
AlwI	GGATC	1 cut(s)	102
AoxI	GGCC	2 cut(s)	193, 233
ApeKI	GCWGC	2 cut(s)	155, 180
ArsI	GACNNNNNNTTYG	2 cut(s)	120, 152
AspS9I	GGNCC	1 cut(s)	194
AxyI	CCTNAGG	1 cut(s)	230
BbvI	GCAGC	2 cut(s)	142, 192
BccI	CCATC	1 cut(s)	227
BciT130I	CCWGG	1 cut(s)	296
BclI	TGATCA	1 cut(s)	202
BcoDI	GTCTC	1 cut(s)	67
BfaI	CTAG	1 cut(s)	245
BisI	GCNGC	4 cut(s)	156, 178, 181, 280
BlsI	GCNGC	4 cut(s)	157, 179, 182, 281
Bme1390I	CCNGG	1 cut(s)	296
BmgT120I	GGNCC	1 cut(s)	194
BmrFI	CCNGG	1 cut(s)	296
BmrI	ACTGGG	1 cut(s)	191
BmuI	ACTGGG	1 cut(s)	191
BsaJI	CCNNGG	1 cut(s)	295
BsaXI	ACNNNNNCTCC	2 cut(s)	80, 110
Bsc4I	CCNNNNNNNGG	2 cut(s)	295, 296
Bse1I	ACTGG	1 cut(s)	197
Bse21I	CCTNAGG	1 cut(s)	230
BseBI	CCWGG	1 cut(s)	296
BseDI	CCNNGG	1 cut(s)	295
BseGI	GGATG	2 cut(s)	219, 225
BseLI	CCNNNNNNNGG	2 cut(s)	295, 296
BseNI	ACTGG	1 cut(s)	197
BseRI	GAGGAG	1 cut(s)	228
BseXI	GCAGC	2 cut(s)	142, 192
BseYI	CCCAGC	1 cut(s)	211
Bsh1285I	CGRYCG	1 cut(s)	83
BshFI	GGCC	2 cut(s)	195, 235
BsiEI	CGRYCG	1 cut(s)	83
BslI	CCNNNNNNNGG	2 cut(s)	295, 296
BsmAI	GTCTC	1 cut(s)	67
BsnI	GGCC	2 cut(s)	195, 235
Bsp143I	GATC	3 cut(s)	80, 107, 202
BspACI	CCGC	5 cut(s)	132, 177, 183, 280, 290
BspANI	GGCC	2 cut(s)	195, 235
BspPI	GGATC	1 cut(s)	102
BsrI	ACTGG	1 cut(s)	197
BssECI	CCNNGG	1 cut(s)	295
BssMI	GATC	3 cut(s)	80, 107, 202
Bst2UI	CCWGG	1 cut(s)	296
Bst6I	CTCTTC	1 cut(s)	264
BstDEI	CTNAG	2 cut(s)	230, 321
BstF5I	GGATG	2 cut(s)	219, 225
BstKTI	GATC	3 cut(s)	83, 110, 205
BstMAI	GTCTC	1 cut(s)	67
BstMBI	GATC	3 cut(s)	80, 107, 202
BstMCI	CGRYCG	1 cut(s)	83
BstMWI	GCNNNNNNNGC	1 cut(s)	174
BstNI	CCWGG	1 cut(s)	296
BstSCI	CCNGG	1 cut(s)	294
BstV1I	GCAGC	2 cut(s)	142, 192
BstX2I	RGATCY	1 cut(s)	107
BstYI	RGATCY	1 cut(s)	107
Bsu36I	CCTNAGG	1 cut(s)	230
BsuRI	GGCC	2 cut(s)	195, 235
BtgZI	GCGATG	1 cut(s)	260
BtsCI	GGATG	2 cut(s)	219, 225
Cfr13I	GGNCC	1 cut(s)	194
Csp6I	GTAC	1 cut(s)	310
CviAII	CATG	1 cut(s)	284
CviJI	RGCY	4 cut(s)	155, 168, 195, 235
CviKI_1	RGCY	4 cut(s)	155, 168, 195, 235
CviQI	GTAC	1 cut(s)	310
DdeI	CTNAG	2 cut(s)	230, 321
DpnI	GATC	3 cut(s)	82, 109, 204
DpnII	GATC	3 cut(s)	80, 107, 202
DrdI	GACNNNNNNGTC	1 cut(s)	270
DseDI	GACNNNNNNGTC	1 cut(s)	270
Eam1104I	CTCTTC	1 cut(s)	264
EarI	CTCTTC	1 cut(s)	264
Eco147I	AGGCCT	1 cut(s)	235
Eco81I	CCTNAGG	1 cut(s)	230
EcoRII	CCWGG	1 cut(s)	294
FaeI	CATG	1 cut(s)	287
FaiI	YATR	1 cut(s)	285
FatI	CATG	1 cut(s)	283
FauI	CCCGC	1 cut(s)	297
FbaI	TGATCA	1 cut(s)	202
Fnu4HI	GCNGC	4 cut(s)	156, 178, 181, 280
FokI	GGATG	2 cut(s)	206, 212
Fsp4HI	GCNGC	4 cut(s)	156, 178, 181, 280
FspBI	CTAG	1 cut(s)	245
GluI	GCNGC	4 cut(s)	156, 178, 181, 280
GsaI	CCCAGC	1 cut(s)	215
HaeIII	GGCC	2 cut(s)	195, 235
Hin1II	CATG	1 cut(s)	287
HindIII	AAGCTT	1 cut(s)	166
HinfI	GANTC	1 cut(s)	146
Hpy188I	TCNGA	2 cut(s)	40, 112
Hpy188III	TCNNGA	1 cut(s)	56
HpyCH4V	TGCA	1 cut(s)	158
HpyF10VI	GCNNNNNNNGC	1 cut(s)	174
HpyF3I	CTNAG	2 cut(s)	230, 321
Hsp92II	CATG	1 cut(s)	287
Ksp22I	TGATCA	1 cut(s)	202
Kzo9I	GATC	3 cut(s)	80, 107, 202
LpnPI	CCDG	5 cut(s)	69, 210, 225, 281, 308
Lsp1109I	GCAGC	2 cut(s)	142, 192
MaeI	CTAG	1 cut(s)	245
MalI	GATC	3 cut(s)	82, 109, 204
MboI	GATC	3 cut(s)	80, 107, 202
MboII	GAAGA	3 cut(s)	13, 130, 251
MflI	RGATCY	1 cut(s)	107
MluCI	AATT	1 cut(s)	303
MlyI	GAGTC	1 cut(s)	140
MnlI	CCTC	7 cut(s)	4, 9, 179, 233, 246, 249, 267
MspA1I	CMGCKG	1 cut(s)	183
MspR9I	CCNGG	1 cut(s)	296
MvaI	CCWGG	1 cut(s)	296
MwoI	GCNNNNNNNGC	1 cut(s)	174
NdeII	GATC	3 cut(s)	80, 107, 202
NlaIII	CATG	1 cut(s)	287
PceI	AGGCCT	1 cut(s)	235
PkrI	GCNGC	4 cut(s)	157, 179, 182, 281
Ple19I	CGATCG	1 cut(s)	83
PleI	GAGTC	1 cut(s)	140
PpsI	GAGTC	1 cut(s)	140
Psp6I	CCWGG	1 cut(s)	294
PspFI	CCCAGC	1 cut(s)	211
PspGI	CCWGG	1 cut(s)	294
PspPI	GGNCC	1 cut(s)	194
PsuI	RGATCY	1 cut(s)	107
PvuI	CGATCG	1 cut(s)	83
RsaI	GTAC	1 cut(s)	311
RsaNI	GTAC	1 cut(s)	310
SatI	GCNGC	4 cut(s)	156, 178, 181, 280
Sau3AI	GATC	3 cut(s)	80, 107, 202
Sau96I	GGNCC	1 cut(s)	194
SchI	GAGTC	1 cut(s)	140
ScrFI	CCNGG	1 cut(s)	296
SetI	ASST	5 cut(s)	20, 157, 170, 259, 297
Sse9I	AATT	1 cut(s)	303
SseBI	AGGCCT	1 cut(s)	235
SsiI	CCGC	5 cut(s)	132, 177, 183, 280, 290
SspMI	CTAG	1 cut(s)	245
StuI	AGGCCT	1 cut(s)	235
StyD4I	CCNGG	1 cut(s)	294
TaqI	TCGA	2 cut(s)	9, 262
TasI	AATT	1 cut(s)	303
TauI	GCSGC	2 cut(s)	180, 282
TseI	GCWGC	2 cut(s)	155, 180
XspI	CTAG	1 cut(s)	245

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.