Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0019056

Physical Location & Seq

Genomic Coordinates Forward (+)

50065889 .. 50067727

Gene Structure 1839 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00368250.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 627 bp

ATGAGCTTATTCAAAACGTTTCCTCTAGGAGAGAGTCTTGCATTCGTCAACCGTATCACGTGGCGATCTGTATCACGTGTCCGGTACGTCGACATATGCAAGAATTTCTCTTCCTCTAGTCAAGCCATTGCAGATGATTGGATCCAAAGAAATGTTGGAAACTATGGGGATGCGAACTTCAAATACATTGCAGTTGGAAATGAAATAGATGTCAAAGATCCAATGGCACCATATGTTGGCCTTGCCATAGAAAAGTTCATGCTGCAATTTCTAAGCTATGCTGCATCACCAATTTCACAATATGACGAAGAAGAACGACGCCAAGGGCAAAGACAGTCAACAAGCTCAGCCAAAAATGCCGATCAAGTCCAACTTAACTGGCCTGACCTCGATGACGACGACTCTGAAGAAGTCGGCTGCGGTGGAGTGAATACAATAAAGACAAGATCGGGGCCTTTGTCGCAGGAGAGCTTTTTCGGGTTTAGGGGAGACAAAGGCTTGAAGTGGTCTAGTAATTTGTCGAGGCCTATCGCCAGTGATGGTAGTGCAGGGTTGAAGAAGAAGGAGGATGCGACGACGAGTCTGAGCAGGACGAGGTTCAATGAGAGTGTGACAAGTGGGAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0046777 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

208

Amino Acids

23.06

Weight (kDa)

5.35

Isoelectric Point (pI)

44.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019056)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000007408
rosa_multiflora	Rmu_sc0028504.1_g000001
rosa_roxburghii	Rroxscaffold_5G00368250
rosa_samantha	Rh2AG153700 Rh2AG217900 Rh2BG159700 Rh2CG159300 Rh2DG159300 Rh2DG590200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	226
AccB7I	CCANNNNNTGG	1 cut(s)	236
AccI	GTMKAC	1 cut(s)	90
AciI	CCGC	1 cut(s)	420
AclI	AACGTT	1 cut(s)	17
AclWI	GGATC	3 cut(s)	136, 149, 212
AcsI	RAATTY	1 cut(s)	103
AcuI	CTGAAG	1 cut(s)	426
AcvI	CACGTG	2 cut(s)	60, 77
AcyI	GRCGYC	1 cut(s)	319
AfaI	GTAC	1 cut(s)	86
AfiI	CCNNNNNNNGG	1 cut(s)	236
AflIII	ACRYGT	1 cut(s)	76
AgsI	TTSAA	5 cut(s)	13, 181, 502, 556, 601
AhdI	GACNNNNNGTC	1 cut(s)	579
AluBI	AGCT	5 cut(s)	6, 276, 345, 471, 624
AluI	AGCT	5 cut(s)	6, 276, 345, 471, 624
Alw26I	GTCTC	1 cut(s)	483
AlwI	GGATC	3 cut(s)	136, 149, 212
AoxI	GGCC	4 cut(s)	238, 380, 452, 524
ApeKI	GCWGC	3 cut(s)	262, 281, 417
ApoI	RAATTY	1 cut(s)	103
AspS9I	GGNCC	1 cut(s)	452
AsuHPI	GGTGA	1 cut(s)	279
BamHI	GGATCC	1 cut(s)	141
BanI	GGYRCC	1 cut(s)	226
BbrPI	CACGTG	2 cut(s)	60, 77
BbvI	GCAGC	3 cut(s)	249, 268, 404
BccI	CCATC	1 cut(s)	533
BcoDI	GTCTC	1 cut(s)	483
BfaI	CTAG	4 cut(s)	26, 117, 510, 625
BisI	GCNGC	3 cut(s)	263, 282, 418
BlpI	GCTNAGC	1 cut(s)	346
BlsI	GCNGC	3 cut(s)	264, 283, 419
BmeRI	GACNNNNNGTC	1 cut(s)	579
BmgT120I	GGNCC	1 cut(s)	452
BmiI	GGNNCC	3 cut(s)	143, 228, 453
BmsI	GCATC	3 cut(s)	160, 293, 559
Bpu1102I	GCTNAGC	1 cut(s)	346
BsaAI	YACGTR	2 cut(s)	60, 77
BsaBI	GATNNNNATC	1 cut(s)	70
BsaHI	GRCGYC	1 cut(s)	319
BsaJI	CCNNGG	1 cut(s)	322
BsaWI	WCCGGW	1 cut(s)	81
Bsc4I	CCNNNNNNNGG	1 cut(s)	236
Bse1I	ACTGG	2 cut(s)	383, 534
Bse3DI	GCAATG	2 cut(s)	126, 186
Bse8I	GATNNNNATC	1 cut(s)	70
BseDI	CCNNGG	1 cut(s)	322
BseGI	GGATG	2 cut(s)	175, 574
BseJI	GATNNNNATC	1 cut(s)	70
BseLI	CCNNNNNNNGG	1 cut(s)	236
BseMI	GCAATG	2 cut(s)	126, 186
BseMII	CTCAG	2 cut(s)	360, 575
BseNI	ACTGG	2 cut(s)	383, 534
BseXI	GCAGC	3 cut(s)	249, 268, 404
BsgI	GTGCAG	1 cut(s)	567
BshFI	GGCC	4 cut(s)	240, 382, 454, 526
BshNI	GGYRCC	1 cut(s)	226
BsiSI	CCGG	1 cut(s)	82
BslI	CCNNNNNNNGG	1 cut(s)	236
BsmAI	GTCTC	1 cut(s)	483
BsmI	GAATGC	1 cut(s)	41
BsnI	GGCC	4 cut(s)	240, 382, 454, 526
Bsp143I	GATC	5 cut(s)	65, 141, 217, 361, 446
Bsp1720I	GCTNAGC	1 cut(s)	346
BspACI	CCGC	1 cut(s)	420
BspANI	GGCC	4 cut(s)	240, 382, 454, 526
BspCNI	CTCAG	2 cut(s)	359, 576
BspLI	GGNNCC	3 cut(s)	143, 228, 453
BspPI	GGATC	3 cut(s)	136, 149, 212
BspT107I	GGYRCC	1 cut(s)	226
BsrDI	GCAATG	2 cut(s)	126, 186
BsrI	ACTGG	2 cut(s)	383, 534
BssECI	CCNNGG	1 cut(s)	322
BssMI	GATC	5 cut(s)	65, 141, 217, 361, 446
BssNI	GRCGYC	1 cut(s)	319
BssT1I	CCWWGG	1 cut(s)	322
Bst4CI	ACNGT	2 cut(s)	53, 336
Bst6I	CTCTTC	1 cut(s)	115
BstACI	GRCGYC	1 cut(s)	319
BstBAI	YACGTR	2 cut(s)	60, 77
BstDEI	CTNAG	3 cut(s)	272, 346, 584
BstF5I	GGATG	2 cut(s)	175, 574
BstKTI	GATC	5 cut(s)	68, 144, 220, 364, 449
BstMAI	GTCTC	1 cut(s)	483
BstMBI	GATC	5 cut(s)	65, 141, 217, 361, 446
BstMWI	GCNNNNNNNGC	2 cut(s)	356, 460
BstV1I	GCAGC	3 cut(s)	249, 268, 404
BstX2I	RGATCY	2 cut(s)	141, 217
BstYI	RGATCY	2 cut(s)	141, 217
BsuRI	GGCC	4 cut(s)	240, 382, 454, 526
BtsCI	GGATG	2 cut(s)	175, 574
BtsIMutI	CAGTG	1 cut(s)	541
Cfr13I	GGNCC	1 cut(s)	452
CseI	GACGC	1 cut(s)	327
Csp6I	GTAC	1 cut(s)	85
CviAII	CATG	1 cut(s)	259
CviQI	GTAC	1 cut(s)	85
DdeI	CTNAG	3 cut(s)	272, 346, 584
DpnI	GATC	5 cut(s)	67, 143, 219, 363, 448
DpnII	GATC	5 cut(s)	65, 141, 217, 361, 446
DriI	GACNNNNNGTC	1 cut(s)	579
Eam1104I	CTCTTC	1 cut(s)	115
Eam1105I	GACNNNNNGTC	1 cut(s)	579
EarI	CTCTTC	1 cut(s)	115
Eco130I	CCWWGG	1 cut(s)	322
Eco147I	AGGCCT	1 cut(s)	526
Eco57I	CTGAAG	1 cut(s)	426
Eco72I	CACGTG	2 cut(s)	60, 77
EcoO109I	RGGNCCY	1 cut(s)	452
EcoT14I	CCWWGG	1 cut(s)	322
ErhI	CCWWGG	1 cut(s)	322
FaeI	CATG	1 cut(s)	262
FaiI	YATR	9 cut(s)	95, 97, 165, 232, 234, 248, 260, 279, 303
FalI	AAGNNNNNCTT	2 cut(s)	357, 389
FatI	CATG	1 cut(s)	258
FauNDI	CATATG	2 cut(s)	95, 232
FblI	GTMKAC	1 cut(s)	90
Fnu4HI	GCNGC	3 cut(s)	263, 282, 418
FokI	GGATG	2 cut(s)	182, 581
Fsp4HI	GCNGC	3 cut(s)	263, 282, 418
FspBI	CTAG	4 cut(s)	26, 117, 510, 625
GluI	GCNGC	3 cut(s)	263, 282, 418
HaeIII	GGCC	4 cut(s)	240, 382, 454, 526
HapII	CCGG	1 cut(s)	82
HgaI	GACGC	1 cut(s)	327
Hin1I	GRCGYC	1 cut(s)	319
Hin1II	CATG	1 cut(s)	262
HincII	GTYRAC	3 cut(s)	49, 91, 339
HindII	GTYRAC	3 cut(s)	49, 91, 339
HinfI	GANTC	3 cut(s)	34, 401, 580
HpaII	CCGG	1 cut(s)	82
HphI	GGTGA	1 cut(s)	279
Hpy166II	GTNNAC	3 cut(s)	49, 91, 339
Hpy188I	TCNGA	2 cut(s)	406, 585
Hpy8I	GTNNAC	3 cut(s)	49, 91, 339
Hpy99I	CGWCG	5 cut(s)	92, 321, 401, 577, 580
HpyAV	CCTTC	1 cut(s)	556
HpyCH4III	ACNGT	2 cut(s)	53, 336
HpyCH4IV	ACGT	4 cut(s)	17, 59, 76, 87
HpyCH4V	TGCA	7 cut(s)	41, 99, 131, 191, 265, 284, 548
HpyF10VI	GCNNNNNNNGC	2 cut(s)	356, 460
HpyF3I	CTNAG	3 cut(s)	272, 346, 584
HpySE526I	ACGT	4 cut(s)	17, 59, 76, 87
Hsp92I	GRCGYC	1 cut(s)	319
Hsp92II	CATG	1 cut(s)	262
Kzo9I	GATC	5 cut(s)	65, 141, 217, 361, 446
LmnI	GCTCC	1 cut(s)	621
LpnPI	CCDG	7 cut(s)	95, 364, 396, 449, 534, 547, 574
Lsp1109I	GCAGC	3 cut(s)	249, 268, 404
LweI	GCATC	3 cut(s)	160, 293, 559
MaeI	CTAG	4 cut(s)	26, 117, 510, 625
MaeII	ACGT	4 cut(s)	17, 59, 76, 87
MaeIII	GTNAC	1 cut(s)	610
MalI	GATC	5 cut(s)	67, 143, 219, 363, 448
MboI	GATC	5 cut(s)	65, 141, 217, 361, 446
MboII	GAAGA	6 cut(s)	102, 320, 323, 419, 568, 571
MflI	RGATCY	2 cut(s)	141, 217
MluCI	AATT	4 cut(s)	103, 266, 291, 514
MlyI	GAGTC	3 cut(s)	43, 395, 589
MmeI	TCCRAC	3 cut(s)	136, 175, 394
MnlI	CCTC	6 cut(s)	33, 124, 398, 516, 559, 588
MseI	TTAA	1 cut(s)	375
MspI	CCGG	1 cut(s)	82
Mva1269I	GAATGC	1 cut(s)	41
MwoI	GCNNNNNNNGC	2 cut(s)	356, 460
NdeI	CATATG	2 cut(s)	95, 232
NdeII	GATC	5 cut(s)	65, 141, 217, 361, 446
NlaIII	CATG	1 cut(s)	262
NlaIV	GGNNCC	3 cut(s)	143, 228, 453
NmuCI	GTSAC	1 cut(s)	610
PceI	AGGCCT	1 cut(s)	526
PcsI	WCGNNNNNNNCGW	1 cut(s)	396
PctI	GAATGC	1 cut(s)	41
PflMI	CCANNNNNTGG	1 cut(s)	236
PkrI	GCNGC	3 cut(s)	264, 283, 419
PleI	GAGTC	3 cut(s)	42, 395, 588
PmaCI	CACGTG	2 cut(s)	60, 77
PmlI	CACGTG	2 cut(s)	60, 77
PpsI	GAGTC	3 cut(s)	42, 395, 588
Ppu21I	YACGTR	2 cut(s)	60, 77
Psp1406I	AACGTT	1 cut(s)	17
PspCI	CACGTG	2 cut(s)	60, 77
PspN4I	GGNNCC	3 cut(s)	143, 228, 453
PspPI	GGNCC	1 cut(s)	452
PsrI	GAACNNNNNNTAC	2 cut(s)	167, 199
PsuI	RGATCY	2 cut(s)	141, 217
RsaI	GTAC	1 cut(s)	86
RsaNI	GTAC	1 cut(s)	85
SalI	GTCGAC	1 cut(s)	89
SaqAI	TTAA	1 cut(s)	375
SatI	GCNGC	3 cut(s)	263, 282, 418
Sau3AI	GATC	5 cut(s)	65, 141, 217, 361, 446
Sau96I	GGNCC	1 cut(s)	452
SchI	GAGTC	3 cut(s)	43, 395, 589
SfaNI	GCATC	3 cut(s)	160, 293, 559
Sse9I	AATT	4 cut(s)	103, 266, 291, 514
SseBI	AGGCCT	1 cut(s)	526
SsiI	CCGC	1 cut(s)	420
SspMI	CTAG	4 cut(s)	26, 117, 510, 625
StuI	AGGCCT	1 cut(s)	526
StyI	CCWWGG	1 cut(s)	322
TaaI	ACNGT	2 cut(s)	53, 336
TaiI	ACGT	4 cut(s)	20, 62, 79, 90
TaqI	TCGA	3 cut(s)	90, 390, 521
TasI	AATT	4 cut(s)	103, 266, 291, 514
Tru1I	TTAA	1 cut(s)	375
Tru9I	TTAA	1 cut(s)	375
TscAI	CASTG	1 cut(s)	541
TseFI	GTSAC	1 cut(s)	610
TseI	GCWGC	3 cut(s)	262, 281, 417
Tsp45I	GTSAC	1 cut(s)	610
TspDTI	ATGAA	2 cut(s)	216, 247
TspRI	CASTG	1 cut(s)	541
Van91I	CCANNNNNTGG	1 cut(s)	236
XapI	RAATTY	1 cut(s)	103
XcmI	CCANNNNNNNNNTGG	1 cut(s)	152
XmiI	GTMKAC	1 cut(s)	90
XspI	CTAG	4 cut(s)	26, 117, 510, 625

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.