Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0018655

Physical Location & Seq

Genomic Coordinates Forward (+)

40616413 .. 40616924

Gene Structure 512 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000008837

Sequence Viewer

CDS Protein Promoter (2k)

Length: 444 bp

ATGATTAATCTTCTTCTCTCTTTTCTCTGCATTTTTACCACCACCGCCCTTTCACAACCAACCAGTGCTCTGCCATACTCTCAAGAACCCATCGACGCCACCACCCCCATCTCTCCTCCTCCTCCTTCAATCTCCCCAACCCCACCACCGGCTTCAATCCCACCCAAGACTCCTCTCATCCCTAACGTCTTCATCATCGGAGACACCTCCGTCAACTCCAGCACCAACAATTTCCTTGGGACATTGGCAAGCGCCCACCGCCTCCTTTACGGCCGCTATTTCGACACTCACGAGCCCACTGGGCGGTTCTGCAATGGCAGAATCCCATTCGATTATATTGGTCTTGAAACCCAAAATGTCCAGAATCTGAAACTCAAGGACTGTCGCCAAACAGGTTCTGTGCATAATAGTATGTCAGTTCTTGAAGGAATTAAATGGTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lipase_GDSL

Protein Analysis

148

Amino Acids

16.08

Weight (kDa)

6.81

Isoelectric Point (pI)

33.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018655)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000008837 RLG00000014446
rosa_multiflora	Rmu_sc0000301.1_g000002 Rmu_sc0001616.1_g000025 Rmu_sc0002290.1_g000011
rosa_samantha	Rh5CG243400 Rh5DG411700 Rh6AG099600 Rh6DG082900 Rh7CG199500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	209
AciI	CCGC	4 cut(s)	45, 259, 274, 304
AcoI	YGGCCR	1 cut(s)	271
AcyI	GRCGYC	1 cut(s)	96
AfiI	CCNNNNNNNGG	2 cut(s)	148, 303
AgsI	TTSAA	4 cut(s)	129, 156, 347, 425
Alw21I	GWGCWC	1 cut(s)	70
Alw26I	GTCTC	1 cut(s)	195
AlwNI	CAGNNNCTG	2 cut(s)	367, 398
AoxI	GGCC	1 cut(s)	271
AseI	ATTAAT	1 cut(s)	6
AspLEI	GCGC	1 cut(s)	254
BanII	GRGCYC	1 cut(s)	297
BauI	CACGAG	1 cut(s)	290
BbsI	GAAGAC	1 cut(s)	181
Bbv12I	GWGCWC	1 cut(s)	70
BccI	CCATC	2 cut(s)	98, 116
BceAI	ACGGC	1 cut(s)	286
BcoDI	GTCTC	1 cut(s)	195
BfoI	RGCGCY	1 cut(s)	255
BglI	GCCNNNNNGGC	1 cut(s)	301
BisI	GCNGC	1 cut(s)	274
BlsI	GCNGC	1 cut(s)	275
BmrI	ACTGGG	1 cut(s)	309
BmuI	ACTGGG	1 cut(s)	309
BpiI	GAAGAC	1 cut(s)	181
BpmI	CTGGAG	1 cut(s)	202
BpuEI	CTTGAG	2 cut(s)	66, 359
BsaHI	GRCGYC	1 cut(s)	96
BsaJI	CCNNGG	1 cut(s)	235
Bsc4I	CCNNNNNNNGG	2 cut(s)	148, 303
Bse118I	RCCGGY	1 cut(s)	148
Bse1I	ACTGG	2 cut(s)	63, 304
Bse3DI	GCAATG	1 cut(s)	319
BseDI	CCNNGG	1 cut(s)	235
BseGI	GGATG	1 cut(s)	177
BseLI	CCNNNNNNNGG	2 cut(s)	148, 303
BseMI	GCAATG	1 cut(s)	319
BseNI	ACTGG	2 cut(s)	63, 304
BseRI	GAGGAG	4 cut(s)	105, 108, 111, 162
BseX3I	CGGCCG	1 cut(s)	271
Bsh1285I	CGRYCG	1 cut(s)	274
BshFI	GGCC	1 cut(s)	273
BsiEI	CGRYCG	1 cut(s)	274
BsiHKAI	GWGCWC	1 cut(s)	70
BsiSI	CCGG	1 cut(s)	149
BslFI	GGGAC	1 cut(s)	253
BslI	CCNNNNNNNGG	2 cut(s)	148, 303
BsmAI	GTCTC	1 cut(s)	195
BsmFI	GGGAC	1 cut(s)	253
BsnI	GGCC	1 cut(s)	273
Bsp1286I	GDGCHC	2 cut(s)	70, 297
BspACI	CCGC	4 cut(s)	45, 259, 274, 304
BspANI	GGCC	1 cut(s)	273
BsrDI	GCAATG	1 cut(s)	319
BsrFI	RCCGGY	1 cut(s)	148
BsrI	ACTGG	2 cut(s)	63, 304
BssAI	RCCGGY	1 cut(s)	148
BssECI	CCNNGG	1 cut(s)	235
BssNI	GRCGYC	1 cut(s)	96
BssSI	CACGAG	1 cut(s)	290
BssT1I	CCWWGG	1 cut(s)	235
Bst2BI	CACGAG	1 cut(s)	290
Bst4CI	ACNGT	1 cut(s)	383
BstACI	GRCGYC	1 cut(s)	96
BstC8I	GCNNGC	1 cut(s)	250
BstF5I	GGATG	1 cut(s)	177
BstH2I	RGCGCY	1 cut(s)	255
BstHHI	GCGC	1 cut(s)	254
BstMAI	GTCTC	1 cut(s)	195
BstMCI	CGRYCG	1 cut(s)	274
BstMWI	GCNNNNNNNGC	2 cut(s)	258, 301
BstV2I	GAAGAC	1 cut(s)	181
BstZI	CGGCCG	1 cut(s)	271
BsuRI	GGCC	1 cut(s)	273
BtsCI	GGATG	1 cut(s)	177
BtsIMutI	CAGTG	2 cut(s)	70, 297
Cac8I	GCNNGC	1 cut(s)	250
CaiI	CAGNNNCTG	2 cut(s)	367, 398
CfoI	GCGC	1 cut(s)	254
Cfr10I	RCCGGY	1 cut(s)	148
CseI	GACGC	1 cut(s)	104
CviJI	RGCY	3 cut(s)	152, 273, 295
CviKI_1	RGCY	3 cut(s)	152, 273, 295
DrdI	GACNNNNNNGTC	1 cut(s)	209
DseDI	GACNNNNNNGTC	1 cut(s)	209
EaeI	YGGCCR	1 cut(s)	271
EagI	CGGCCG	1 cut(s)	271
EclXI	CGGCCG	1 cut(s)	271
Eco130I	CCWWGG	1 cut(s)	235
Eco24I	GRGCYC	1 cut(s)	297
Eco52I	CGGCCG	1 cut(s)	271
EcoT14I	CCWWGG	1 cut(s)	235
EcoT38I	GRGCYC	1 cut(s)	297
ErhI	CCWWGG	1 cut(s)	235
FaiI	YATR	4 cut(s)	76, 336, 405, 413
FaqI	GGGAC	1 cut(s)	253
Fnu4HI	GCNGC	1 cut(s)	274
FokI	GGATG	1 cut(s)	164
FriOI	GRGCYC	1 cut(s)	297
Fsp4HI	GCNGC	1 cut(s)	274
GlaI	GCGC	1 cut(s)	253
GluI	GCNGC	1 cut(s)	274
GsuI	CTGGAG	1 cut(s)	202
HaeII	RGCGCY	1 cut(s)	255
HaeIII	GGCC	1 cut(s)	273
HapII	CCGG	1 cut(s)	149
HgaI	GACGC	1 cut(s)	104
HhaI	GCGC	1 cut(s)	254
Hin1I	GRCGYC	1 cut(s)	96
Hin6I	GCGC	1 cut(s)	252
HinP1I	GCGC	1 cut(s)	252
HincII	GTYRAC	1 cut(s)	214
HindII	GTYRAC	1 cut(s)	214
HinfI	GANTC	3 cut(s)	169, 321, 364
HpaII	CCGG	1 cut(s)	149
Hpy166II	GTNNAC	1 cut(s)	214
Hpy188I	TCNGA	3 cut(s)	200, 369, 443
Hpy188III	TCNNGA	5 cut(s)	83, 290, 344, 361, 422
Hpy8I	GTNNAC	1 cut(s)	214
Hpy99I	CGWCG	1 cut(s)	98
HpyAV	CCTTC	2 cut(s)	135, 419
HpyCH4III	ACNGT	1 cut(s)	383
HpyCH4IV	ACGT	1 cut(s)	186
HpyCH4V	TGCA	3 cut(s)	30, 312, 403
HpyF10VI	GCNNNNNNNGC	2 cut(s)	258, 301
HpySE526I	ACGT	1 cut(s)	186
Hsp92I	GRCGYC	1 cut(s)	96
HspAI	GCGC	1 cut(s)	252
LpnPI	CCDG	6 cut(s)	76, 162, 232, 285, 374, 378
MaeII	ACGT	1 cut(s)	186
MboII	GAAGA	2 cut(s)	5, 181
MhlI	GDGCHC	2 cut(s)	70, 297
MluCI	AATT	2 cut(s)	229, 429
MlyI	GAGTC	1 cut(s)	163
MnlI	CCTC	6 cut(s)	126, 129, 132, 183, 217, 272
MseI	TTAA	2 cut(s)	6, 432
MspI	CCGG	1 cut(s)	149
MwoI	GCNNNNNNNGC	2 cut(s)	258, 301
PcsI	WCGNNNNNNNCGW	1 cut(s)	288
PfeI	GAWTC	2 cut(s)	321, 364
PkrI	GCNGC	1 cut(s)	275
PleI	GAGTC	1 cut(s)	163
PpsI	GAGTC	1 cut(s)	163
PshBI	ATTAAT	1 cut(s)	6
PstNI	CAGNNNCTG	2 cut(s)	367, 398
SaqAI	TTAA	2 cut(s)	6, 432
SatI	GCNGC	1 cut(s)	274
SchI	GAGTC	1 cut(s)	163
SduI	GDGCHC	2 cut(s)	70, 297
SetI	ASST	3 cut(s)	189, 209, 397
SmlI	CTYRAG	2 cut(s)	81, 374
SmoI	CTYRAG	2 cut(s)	81, 374
Sse9I	AATT	2 cut(s)	229, 429
SsiI	CCGC	4 cut(s)	45, 259, 274, 304
StyI	CCWWGG	1 cut(s)	235
TaaI	ACNGT	1 cut(s)	383
TaiI	ACGT	1 cut(s)	189
TaqI	TCGA	3 cut(s)	93, 282, 330
TasI	AATT	2 cut(s)	229, 429
TauI	GCSGC	1 cut(s)	276
TfiI	GAWTC	2 cut(s)	321, 364
Tru1I	TTAA	2 cut(s)	6, 432
Tru9I	TTAA	2 cut(s)	6, 432
TscAI	CASTG	2 cut(s)	70, 304
TspDTI	ATGAA	1 cut(s)	181
TspGWI	ACGGA	1 cut(s)	199
TspRI	CASTG	2 cut(s)	70, 304
VspI	ATTAAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.