Rh5DG411700

Belongs to the 'GDSL' lipolytic enzyme family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0018655
Physical Location & Seq
Reverse (-)
65385826 .. 65386194
369 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG411700.1

Sequence Viewer

Length: 369 bp
ATGGCGATGATCAATCTTCTTCTCTCTTTTCTCTGCATTTTCACCACCACCGCCCTTTCACAACCAACCAGTGCTCCGCCGTACTCTCAAGAACCCATCGACGCCGCCACCCCCATCTCTCCTCCTTCAATCTCCCCAACCCCACCACTGGCTTCAATCCCACCCAAGACTCCTCTCGTCCCTGCCCTTTTCGTCATCGGAGACTCCTACGACACCAACAATTTCCCCGGGATATTGGCACACACCGACAGCCTCCCTTACGACCGCGATTTCGACACGCACGAGCCCACTGGGCGATTCTGCAATGGCAGAATCCCAGTCGATTATATTGGTAATTTCACTTCTTTAGAATACCCTTTTCTTGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lipase_GDSL

Protein Analysis

122

Amino Acids

13.26

Weight (kDa)

4.24

Isoelectric Point (pI)

43.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 267
AciI CCGC 4 cut(s) 51, 77, 105, 265
AcyI GRCGYC 1 cut(s) 102
AfaI GTAC 1 cut(s) 83
AfiI CCNNNNNNNGG 1 cut(s) 148
AgsI TTSAA 2 cut(s) 129, 156
Alw21I GWGCWC 1 cut(s) 76
Alw26I GTCTC 1 cut(s) 195
Ama87I CYCGRG 1 cut(s) 227
ArsI GACNNNNNNTTYG 2 cut(s) 254, 286
AsuC2I CCSGG 2 cut(s) 228, 229
AsuHPI GGTGA 1 cut(s) 34
AvaI CYCGRG 1 cut(s) 227
BanII GRGCYC 1 cut(s) 288
BarI GAAGNNNNNNTAC 2 cut(s) 325, 357
BauI CACGAG 1 cut(s) 281
Bbv12I GWGCWC 1 cut(s) 76
BccI CCATC 2 cut(s) 104, 122
BceAI ACGGC 1 cut(s) 64
BclI TGATCA 1 cut(s) 9
BcnI CCSGG 2 cut(s) 228, 229
BcoDI GTCTC 1 cut(s) 195
BglI GCCNNNNNGGC 1 cut(s) 292
BisI GCNGC 1 cut(s) 105
BlsI GCNGC 1 cut(s) 106
Bme1390I CCNGG 2 cut(s) 228, 229
BmeT110I CYCGRG 1 cut(s) 227
BmrFI CCNGG 2 cut(s) 228, 229
BmrI ACTGGG 2 cut(s) 300, 311
BmuI ACTGGG 2 cut(s) 300, 311
BpuEI CTTGAG 1 cut(s) 72
BpuMI CCSGG 2 cut(s) 228, 229
BsaHI GRCGYC 1 cut(s) 102
BsaJI CCNNGG 2 cut(s) 226, 227
BsaXI ACNNNNNCTCC 2 cut(s) 58, 88
Bsc4I CCNNNNNNNGG 1 cut(s) 148
Bse1I ACTGG 4 cut(s) 69, 153, 295, 317
Bse3DI GCAATG 1 cut(s) 310
BseDI CCNNGG 2 cut(s) 226, 227
BseLI CCNNNNNNNGG 1 cut(s) 148
BseMI GCAATG 1 cut(s) 310
BseNI ACTGG 4 cut(s) 69, 153, 295, 317
BseRI GAGGAG 2 cut(s) 111, 162
Bsh1236I CGCG 1 cut(s) 267
Bsh1285I CGRYCG 1 cut(s) 265
BsiEI CGRYCG 1 cut(s) 265
BsiHKAI GWGCWC 1 cut(s) 76
BsiHKCI CYCGRG 1 cut(s) 227
BsiSI CCGG 1 cut(s) 228
BslFI GGGAC 1 cut(s) 164
BslI CCNNNNNNNGG 1 cut(s) 148
BsmAI GTCTC 1 cut(s) 195
BsmFI GGGAC 1 cut(s) 164
BsoBI CYCGRG 1 cut(s) 227
Bsp1286I GDGCHC 2 cut(s) 76, 288
Bsp143I GATC 1 cut(s) 9
BspACI CCGC 4 cut(s) 51, 77, 105, 265
BspFNI CGCG 1 cut(s) 267
BsrDI GCAATG 1 cut(s) 310
BsrI ACTGG 4 cut(s) 69, 153, 295, 317
BssECI CCNNGG 2 cut(s) 226, 227
BssMI GATC 1 cut(s) 9
BssNI GRCGYC 1 cut(s) 102
BssSI CACGAG 1 cut(s) 281
Bst2BI CACGAG 1 cut(s) 281
BstACI GRCGYC 1 cut(s) 102
BstFNI CGCG 1 cut(s) 267
BstKTI GATC 1 cut(s) 12
BstMAI GTCTC 1 cut(s) 195
BstMBI GATC 1 cut(s) 9
BstMCI CGRYCG 1 cut(s) 265
BstMWI GCNNNNNNNGC 1 cut(s) 292
BstSCI CCNGG 2 cut(s) 226, 227
BstUI CGCG 1 cut(s) 267
BtgZI GCGATG 1 cut(s) 20
BtsIMutI CAGTG 3 cut(s) 76, 146, 288
Cfr9I CCCGGG 1 cut(s) 227
CseI GACGC 1 cut(s) 110
Csp6I GTAC 1 cut(s) 82
CviJI RGCY 3 cut(s) 152, 252, 286
CviKI_1 RGCY 3 cut(s) 152, 252, 286
CviQI GTAC 1 cut(s) 82
DpnI GATC 1 cut(s) 11
DpnII GATC 1 cut(s) 9
EciI GGCGGA 1 cut(s) 66
Eco24I GRGCYC 1 cut(s) 288
Eco88I CYCGRG 1 cut(s) 227
EcoT38I GRGCYC 1 cut(s) 288
FaiI YATR 1 cut(s) 327
FaqI GGGAC 1 cut(s) 164
FbaI TGATCA 1 cut(s) 9
Fnu4HI GCNGC 1 cut(s) 105
FriOI GRGCYC 1 cut(s) 288
Fsp4HI GCNGC 1 cut(s) 105
GluI GCNGC 1 cut(s) 105
HapII CCGG 1 cut(s) 228
HgaI GACGC 1 cut(s) 110
Hin1I GRCGYC 1 cut(s) 102
HinfI GANTC 4 cut(s) 169, 203, 297, 312
HpaII CCGG 1 cut(s) 228
HphI GGTGA 1 cut(s) 34
Hpy188I TCNGA 1 cut(s) 200
Hpy188III TCNNGA 2 cut(s) 89, 362
Hpy99I CGWCG 1 cut(s) 104
HpyAV CCTTC 1 cut(s) 135
HpyCH4V TGCA 2 cut(s) 36, 303
HpyF10VI GCNNNNNNNGC 1 cut(s) 292
Hsp92I GRCGYC 1 cut(s) 102
Ksp22I TGATCA 1 cut(s) 9
Kzo9I GATC 1 cut(s) 9
LmnI GCTCC 1 cut(s) 79
LpnPI CCDG 6 cut(s) 82, 134, 195, 241, 276, 330
MalI GATC 1 cut(s) 11
MboI GATC 1 cut(s) 9
MboII GAAGA 2 cut(s) 8, 11
MhlI GDGCHC 2 cut(s) 76, 288
MluCI AATT 2 cut(s) 220, 334
MlyI GAGTC 2 cut(s) 163, 197
MnlI CCTC 3 cut(s) 132, 183, 263
MspI CCGG 1 cut(s) 228
MspR9I CCNGG 2 cut(s) 228, 229
MvnI CGCG 1 cut(s) 267
MwoI GCNNNNNNNGC 1 cut(s) 292
NciI CCSGG 2 cut(s) 228, 229
NdeII GATC 1 cut(s) 9
PcsI WCGNNNNNNNCGW 1 cut(s) 279
PfeI GAWTC 2 cut(s) 297, 312
PkrI GCNGC 1 cut(s) 106
PleI GAGTC 2 cut(s) 163, 197
PpsI GAGTC 2 cut(s) 163, 197
RsaI GTAC 1 cut(s) 83
RsaNI GTAC 1 cut(s) 82
SatI GCNGC 1 cut(s) 105
Sau3AI GATC 1 cut(s) 9
SchI GAGTC 2 cut(s) 163, 197
ScrFI CCNGG 2 cut(s) 228, 229
SduI GDGCHC 2 cut(s) 76, 288
SmaI CCCGGG 1 cut(s) 229
SmlI CTYRAG 1 cut(s) 87
SmoI CTYRAG 1 cut(s) 87
Sse9I AATT 2 cut(s) 220, 334
SsiI CCGC 4 cut(s) 51, 77, 105, 265
StyD4I CCNGG 2 cut(s) 226, 227
TaqI TCGA 3 cut(s) 99, 273, 321
TasI AATT 2 cut(s) 220, 334
TauI GCSGC 1 cut(s) 107
TfiI GAWTC 2 cut(s) 297, 312
TscAI CASTG 3 cut(s) 76, 153, 295
TspMI CCCGGG 1 cut(s) 227
TspRI CASTG 3 cut(s) 76, 153, 295
XmaI CCCGGG 1 cut(s) 227
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.