Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002290.1

Orthogroup ID

OG0018655

Physical Location & Seq

Genomic Coordinates Reverse (-)

52550 .. 52840

Gene Structure 291 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002290.1_g000011.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 291 bp

ctgtgcgtattgctcattttgctagtagtgatctctcatcctcctccttcaatctccccaaccccaccactggcttcaatcccacccaagactcctctcgtccctgctctcttcgtcatcggagactcctacggcaccaacaatttcctcgggacattggcacgcgccgacagcctcccctactgccgcgatttctacacgcacgagcccactaagcggttctgcaatggcagaatcccagtcgattatattggtaatttcgcttctttagaatacccttttcttgattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lipase_GDSL

Protein Analysis

96

Amino Acids

10.55

Weight (kDa)

6.06

Isoelectric Point (pI)

35.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018655)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000008837 RLG00000014446
rosa_multiflora	Rmu_sc0000301.1_g000002 Rmu_sc0001616.1_g000025 Rmu_sc0002290.1_g000011
rosa_samantha	Rh5CG243400 Rh5DG411700 Rh6AG099600 Rh6DG082900 Rh7CG199500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	134
AccII	CGCG	2 cut(s)	165, 189
AciI	CCGC	2 cut(s)	187, 217
AfiI	CCNNNNNNNGG	2 cut(s)	70, 216
AgsI	TTSAA	2 cut(s)	51, 78
Alw26I	GTCTC	1 cut(s)	117
Ama87I	CYCGRG	1 cut(s)	149
AspLEI	GCGC	1 cut(s)	167
AvaI	CYCGRG	1 cut(s)	149
BanI	GGYRCC	1 cut(s)	134
BanII	GRGCYC	1 cut(s)	210
BarI	GAAGNNNNNNTAC	2 cut(s)	247, 279
BauI	CACGAG	1 cut(s)	203
BceAI	ACGGC	1 cut(s)	148
BcoDI	GTCTC	1 cut(s)	117
BfaI	CTAG	1 cut(s)	23
BisI	GCNGC	1 cut(s)	187
BlsI	GCNGC	1 cut(s)	188
BmeT110I	CYCGRG	1 cut(s)	149
BmiI	GGNNCC	1 cut(s)	136
BmrI	ACTGGG	1 cut(s)	233
BmuI	ACTGGG	1 cut(s)	233
BsaJI	CCNNGG	1 cut(s)	148
Bsc4I	CCNNNNNNNGG	2 cut(s)	70, 216
Bse1I	ACTGG	2 cut(s)	75, 239
Bse3DI	GCAATG	1 cut(s)	232
BseDI	CCNNGG	1 cut(s)	148
BseGI	GGATG	1 cut(s)	37
BseLI	CCNNNNNNNGG	2 cut(s)	70, 216
BseMI	GCAATG	1 cut(s)	232
BseNI	ACTGG	2 cut(s)	75, 239
BseRI	GAGGAG	2 cut(s)	33, 84
Bsh1236I	CGCG	2 cut(s)	165, 189
BshNI	GGYRCC	1 cut(s)	134
BsiHKCI	CYCGRG	1 cut(s)	149
BslFI	GGGAC	2 cut(s)	86, 166
BslI	CCNNNNNNNGG	2 cut(s)	70, 216
BsmAI	GTCTC	1 cut(s)	117
BsmFI	GGGAC	2 cut(s)	86, 166
BsoBI	CYCGRG	1 cut(s)	149
Bsp1286I	GDGCHC	1 cut(s)	210
Bsp143I	GATC	1 cut(s)	30
BspACI	CCGC	2 cut(s)	187, 217
BspFNI	CGCG	2 cut(s)	165, 189
BspLI	GGNNCC	1 cut(s)	136
BspT107I	GGYRCC	1 cut(s)	134
BsrDI	GCAATG	1 cut(s)	232
BsrI	ACTGG	2 cut(s)	75, 239
BssECI	CCNNGG	1 cut(s)	148
BssMI	GATC	1 cut(s)	30
BssSI	CACGAG	1 cut(s)	203
Bst2BI	CACGAG	1 cut(s)	203
Bst6I	CTCTTC	1 cut(s)	116
BstC8I	GCNNGC	1 cut(s)	163
BstDEI	CTNAG	1 cut(s)	213
BstF5I	GGATG	1 cut(s)	37
BstFNI	CGCG	2 cut(s)	165, 189
BstHHI	GCGC	1 cut(s)	167
BstKTI	GATC	1 cut(s)	33
BstMAI	GTCTC	1 cut(s)	117
BstMBI	GATC	1 cut(s)	30
BstMWI	GCNNNNNNNGC	3 cut(s)	19, 171, 214
BstUI	CGCG	2 cut(s)	165, 189
BtsCI	GGATG	1 cut(s)	37
BtsIMutI	CAGTG	1 cut(s)	68
Cac8I	GCNNGC	1 cut(s)	163
CfoI	GCGC	1 cut(s)	167
CviJI	RGCY	3 cut(s)	74, 174, 208
CviKI_1	RGCY	3 cut(s)	74, 174, 208
DdeI	CTNAG	1 cut(s)	213
DpnI	GATC	1 cut(s)	32
DpnII	GATC	1 cut(s)	30
Eam1104I	CTCTTC	1 cut(s)	116
EarI	CTCTTC	1 cut(s)	116
Eco24I	GRGCYC	1 cut(s)	210
Eco88I	CYCGRG	1 cut(s)	149
EcoT38I	GRGCYC	1 cut(s)	210
FaiI	YATR	1 cut(s)	249
FaqI	GGGAC	2 cut(s)	86, 166
Fnu4HI	GCNGC	1 cut(s)	187
FokI	GGATG	1 cut(s)	24
FriOI	GRGCYC	1 cut(s)	210
Fsp4HI	GCNGC	1 cut(s)	187
FspBI	CTAG	1 cut(s)	23
GlaI	GCGC	1 cut(s)	166
GluI	GCNGC	1 cut(s)	187
HhaI	GCGC	1 cut(s)	167
Hin6I	GCGC	1 cut(s)	165
HinP1I	GCGC	1 cut(s)	165
HinfI	GANTC	3 cut(s)	91, 125, 234
Hpy188I	TCNGA	1 cut(s)	122
Hpy188III	TCNNGA	2 cut(s)	151, 284
HpyAV	CCTTC	1 cut(s)	57
HpyCH4V	TGCA	1 cut(s)	225
HpyF10VI	GCNNNNNNNGC	3 cut(s)	19, 171, 214
HpyF3I	CTNAG	1 cut(s)	213
HspAI	GCGC	1 cut(s)	165
Kzo9I	GATC	1 cut(s)	30
LpnPI	CCDG	3 cut(s)	56, 117, 252
MaeI	CTAG	1 cut(s)	23
MalI	GATC	1 cut(s)	32
MboI	GATC	1 cut(s)	30
MboII	GAAGA	1 cut(s)	103
MhlI	GDGCHC	1 cut(s)	210
MluCI	AATT	2 cut(s)	142, 256
MlyI	GAGTC	2 cut(s)	85, 119
MnlI	CCTC	5 cut(s)	51, 54, 105, 158, 185
MvnI	CGCG	2 cut(s)	165, 189
MwoI	GCNNNNNNNGC	3 cut(s)	19, 171, 214
NdeII	GATC	1 cut(s)	30
NlaIV	GGNNCC	1 cut(s)	136
PfeI	GAWTC	1 cut(s)	234
PkrI	GCNGC	1 cut(s)	188
PleI	GAGTC	2 cut(s)	85, 119
PpsI	GAGTC	2 cut(s)	85, 119
PspN4I	GGNNCC	1 cut(s)	136
SatI	GCNGC	1 cut(s)	187
Sau3AI	GATC	1 cut(s)	30
SchI	GAGTC	2 cut(s)	85, 119
SduI	GDGCHC	1 cut(s)	210
Sse9I	AATT	2 cut(s)	142, 256
SsiI	CCGC	2 cut(s)	187, 217
SspMI	CTAG	1 cut(s)	23
TaqI	TCGA	1 cut(s)	243
TasI	AATT	2 cut(s)	142, 256
TauI	GCSGC	1 cut(s)	189
TfiI	GAWTC	1 cut(s)	234
TscAI	CASTG	1 cut(s)	75
TspRI	CASTG	1 cut(s)	75
XspI	CTAG	1 cut(s)	23

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.