Rh7CG199500

Belongs to the 'GDSL' lipolytic enzyme family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0018655
Physical Location & Seq
Forward (+)
17723545 .. 17723919
375 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG199500.1

Sequence Viewer

Length: 375 bp
ATGGCGATGATCAATCTTCTTCTCTCTTTTCTCTGCATTTTCACCACCACTGCCCTTTCACAACCAACCAGTGCTCCGCCGTACTCTCAAGAACTCATCGACGCCGCCACCCCCATCTCTCCTCCTCCTCCTTCAATCTCCCCAACCCCACCACTGGCTTCAATCCCACCCAAGACTTCTCTCGTCCCTGCCCTCTCCGTCATCGGAGACTCCTACGGCACCAACAATTTCCTTGGGACATTGGCACGCACCGACAGCCTCCCTTACGGCCGCGATTTCGACACGCACGAGCCCATTGGGCGGTTCTGCAATGGCAGAATCCCAGTCGATTATATTGGTAATTTCGCTTCTTTTGAATACCATTTTCTTGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lipase_GDSL

Protein Analysis

124

Amino Acids

13.36

Weight (kDa)

4.63

Isoelectric Point (pI)

36.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 218
AccII CGCG 1 cut(s) 273
AciI CCGC 4 cut(s) 77, 105, 271, 301
AcoI YGGCCR 1 cut(s) 268
AcyI GRCGYC 1 cut(s) 102
AfaI GTAC 1 cut(s) 83
AfiI CCNNNNNNNGG 2 cut(s) 154, 300
AgsI TTSAA 3 cut(s) 135, 162, 356
Alw21I GWGCWC 1 cut(s) 76
Alw26I GTCTC 1 cut(s) 201
AoxI GGCC 1 cut(s) 268
AsuHPI GGTGA 1 cut(s) 34
BanI GGYRCC 1 cut(s) 218
BanII GRGCYC 1 cut(s) 294
BarI GAAGNNNNNNTAC 2 cut(s) 331, 363
BauI CACGAG 1 cut(s) 287
Bbv12I GWGCWC 1 cut(s) 76
BccI CCATC 1 cut(s) 122
BceAI ACGGC 3 cut(s) 64, 232, 283
BclI TGATCA 1 cut(s) 9
BcoDI GTCTC 1 cut(s) 201
BglI GCCNNNNNGGC 1 cut(s) 298
BisI GCNGC 2 cut(s) 105, 271
BlsI GCNGC 2 cut(s) 106, 272
BmiI GGNNCC 1 cut(s) 220
BmrI ACTGGG 1 cut(s) 317
BmuI ACTGGG 1 cut(s) 317
BpuEI CTTGAG 1 cut(s) 72
BsaHI GRCGYC 1 cut(s) 102
BsaJI CCNNGG 1 cut(s) 232
BsaXI ACNNNNNCTCC 2 cut(s) 58, 88
Bsc4I CCNNNNNNNGG 2 cut(s) 154, 300
Bse1I ACTGG 3 cut(s) 69, 159, 323
Bse3DI GCAATG 1 cut(s) 316
BseDI CCNNGG 1 cut(s) 232
BseLI CCNNNNNNNGG 2 cut(s) 154, 300
BseMI GCAATG 1 cut(s) 316
BseNI ACTGG 3 cut(s) 69, 159, 323
BseRI GAGGAG 3 cut(s) 111, 114, 117
BseX3I CGGCCG 1 cut(s) 268
Bsh1236I CGCG 1 cut(s) 273
Bsh1285I CGRYCG 1 cut(s) 271
BshFI GGCC 1 cut(s) 270
BshNI GGYRCC 1 cut(s) 218
BsiEI CGRYCG 1 cut(s) 271
BsiHKAI GWGCWC 1 cut(s) 76
BslFI GGGAC 2 cut(s) 170, 250
BslI CCNNNNNNNGG 2 cut(s) 154, 300
BsmAI GTCTC 1 cut(s) 201
BsmFI GGGAC 2 cut(s) 170, 250
BsnI GGCC 1 cut(s) 270
Bsp1286I GDGCHC 2 cut(s) 76, 294
Bsp143I GATC 1 cut(s) 9
BspACI CCGC 4 cut(s) 77, 105, 271, 301
BspANI GGCC 1 cut(s) 270
BspFNI CGCG 1 cut(s) 273
BspLI GGNNCC 1 cut(s) 220
BspT107I GGYRCC 1 cut(s) 218
BsrDI GCAATG 1 cut(s) 316
BsrI ACTGG 3 cut(s) 69, 159, 323
BssECI CCNNGG 1 cut(s) 232
BssMI GATC 1 cut(s) 9
BssNI GRCGYC 1 cut(s) 102
BssSI CACGAG 1 cut(s) 287
BssT1I CCWWGG 1 cut(s) 232
Bst2BI CACGAG 1 cut(s) 287
BstACI GRCGYC 1 cut(s) 102
BstC8I GCNNGC 1 cut(s) 247
BstFNI CGCG 1 cut(s) 273
BstKTI GATC 1 cut(s) 12
BstMAI GTCTC 1 cut(s) 201
BstMBI GATC 1 cut(s) 9
BstMCI CGRYCG 1 cut(s) 271
BstMWI GCNNNNNNNGC 2 cut(s) 255, 298
BstUI CGCG 1 cut(s) 273
BstZI CGGCCG 1 cut(s) 268
BsuRI GGCC 1 cut(s) 270
BtgZI GCGATG 1 cut(s) 20
BtsI GCAGTG 1 cut(s) 48
BtsIMutI CAGTG 3 cut(s) 48, 76, 152
Cac8I GCNNGC 1 cut(s) 247
CseI GACGC 1 cut(s) 110
Csp6I GTAC 1 cut(s) 82
CviJI RGCY 4 cut(s) 158, 258, 270, 292
CviKI_1 RGCY 4 cut(s) 158, 258, 270, 292
CviQI GTAC 1 cut(s) 82
DpnI GATC 1 cut(s) 11
DpnII GATC 1 cut(s) 9
EaeI YGGCCR 1 cut(s) 268
EagI CGGCCG 1 cut(s) 268
EciI GGCGGA 1 cut(s) 66
EclXI CGGCCG 1 cut(s) 268
Eco130I CCWWGG 1 cut(s) 232
Eco24I GRGCYC 1 cut(s) 294
Eco52I CGGCCG 1 cut(s) 268
EcoT14I CCWWGG 1 cut(s) 232
EcoT38I GRGCYC 1 cut(s) 294
ErhI CCWWGG 1 cut(s) 232
FaiI YATR 1 cut(s) 333
FaqI GGGAC 2 cut(s) 170, 250
FbaI TGATCA 1 cut(s) 9
Fnu4HI GCNGC 2 cut(s) 105, 271
FriOI GRGCYC 1 cut(s) 294
Fsp4HI GCNGC 2 cut(s) 105, 271
GluI GCNGC 2 cut(s) 105, 271
HaeIII GGCC 1 cut(s) 270
HgaI GACGC 1 cut(s) 110
Hin1I GRCGYC 1 cut(s) 102
HinfI GANTC 2 cut(s) 209, 318
HphI GGTGA 1 cut(s) 34
Hpy188I TCNGA 1 cut(s) 206
Hpy188III TCNNGA 2 cut(s) 89, 368
Hpy99I CGWCG 1 cut(s) 104
HpyAV CCTTC 1 cut(s) 141
HpyCH4V TGCA 2 cut(s) 36, 309
HpyF10VI GCNNNNNNNGC 2 cut(s) 255, 298
Hsp92I GRCGYC 1 cut(s) 102
Ksp22I TGATCA 1 cut(s) 9
Kzo9I GATC 1 cut(s) 9
LmnI GCTCC 1 cut(s) 79
LpnPI CCDG 4 cut(s) 82, 140, 201, 336
MalI GATC 1 cut(s) 11
MboI GATC 1 cut(s) 9
MboII GAAGA 2 cut(s) 8, 11
MhlI GDGCHC 2 cut(s) 76, 294
MluCI AATT 2 cut(s) 226, 340
MlyI GAGTC 1 cut(s) 203
MnlI CCTC 5 cut(s) 132, 135, 138, 203, 269
MvnI CGCG 1 cut(s) 273
MwoI GCNNNNNNNGC 2 cut(s) 255, 298
NdeII GATC 1 cut(s) 9
NlaIV GGNNCC 1 cut(s) 220
PcsI WCGNNNNNNNCGW 1 cut(s) 285
PfeI GAWTC 1 cut(s) 318
PkrI GCNGC 2 cut(s) 106, 272
PleI GAGTC 1 cut(s) 203
PpsI GAGTC 1 cut(s) 203
PspN4I GGNNCC 1 cut(s) 220
RsaI GTAC 1 cut(s) 83
RsaNI GTAC 1 cut(s) 82
SatI GCNGC 2 cut(s) 105, 271
Sau3AI GATC 1 cut(s) 9
SchI GAGTC 1 cut(s) 203
SduI GDGCHC 2 cut(s) 76, 294
SmlI CTYRAG 1 cut(s) 87
SmoI CTYRAG 1 cut(s) 87
Sse9I AATT 2 cut(s) 226, 340
SsiI CCGC 4 cut(s) 77, 105, 271, 301
StyI CCWWGG 1 cut(s) 232
TaqI TCGA 3 cut(s) 99, 279, 327
TasI AATT 2 cut(s) 226, 340
TauI GCSGC 2 cut(s) 107, 273
TfiI GAWTC 1 cut(s) 318
TscAI CASTG 3 cut(s) 55, 76, 159
TspGWI ACGGA 1 cut(s) 187
TspRI CASTG 3 cut(s) 55, 76, 159
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.