Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0018655

Physical Location & Seq

Genomic Coordinates Reverse (-)

53270405 .. 53271079

Gene Structure 675 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000014446

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

ATGATCAATCTTCTTCTCTCTTTTCTCTGCATTTTCACCACCACCGCCCTTTCACAACCAACCAGTGCTCTGCCGTACTCTCAAGAACCCATCGACTCCGCCACCCCCATCTCTCCTCCTCCTCGTCCTCCTTTAATCTCCCCAACCCCACCACCGACTTCAATCCCACCCAAGACTCCTCTCGTCCCTGACCTCTTCGTCATCGGAGACTCCTCCGTCGACTCCAGCACCAACAATTTCCTCGGAACATTGGCACGCGCCGGCCACCTCCCCTACGGCCGCGATTTCGACACGCACGAGCCCACTGGGCTGTTCTGCAATGGCAGAATCCCATTCGATTATATTGCATTGCGGCTTGGGCTTCCTTTTGTACCCAGTTTTCTGTGGAAGATATGCTTCATGGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lipase_GDSL

Protein Analysis

136

Amino Acids

14.7

Weight (kDa)

5.1

Isoelectric Point (pI)

48.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018655)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000008837 RLG00000014446
rosa_multiflora	Rmu_sc0000301.1_g000002 Rmu_sc0001616.1_g000025 Rmu_sc0002290.1_g000011
rosa_samantha	Rh5CG243400 Rh5DG411700 Rh6AG099600 Rh6DG082900 Rh7CG199500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	197, 215
AccI	GTMKAC	1 cut(s)	219
AccII	CGCG	2 cut(s)	258, 282
AciI	CCGC	4 cut(s)	45, 99, 280, 352
AcoI	YGGCCR	2 cut(s)	262, 277
AfaI	GTAC	2 cut(s)	77, 372
AgsI	TTSAA	1 cut(s)	162
Alw21I	GWGCWC	1 cut(s)	70
Alw26I	GTCTC	1 cut(s)	201
AoxI	GGCC	2 cut(s)	262, 277
AspLEI	GCGC	1 cut(s)	260
AsuHPI	GGTGA	1 cut(s)	28
BanII	GRGCYC	1 cut(s)	303
BauI	CACGAG	1 cut(s)	296
Bbv12I	GWGCWC	1 cut(s)	70
BccI	CCATC	2 cut(s)	98, 116
BceAI	ACGGC	2 cut(s)	58, 292
BcgI	CGANNNNNNTGC	2 cut(s)	326, 360
BclI	TGATCA	1 cut(s)	3
BcoDI	GTCTC	1 cut(s)	201
BglI	GCCNNNNNGGC	1 cut(s)	307
BisI	GCNGC	2 cut(s)	280, 353
BlsI	GCNGC	2 cut(s)	281, 354
BmrI	ACTGGG	2 cut(s)	315, 369
BmuI	ACTGGG	2 cut(s)	315, 369
BpmI	CTGGAG	1 cut(s)	208
BpuEI	CTTGAG	1 cut(s)	66
BsaJI	CCNNGG	1 cut(s)	241
Bse118I	RCCGGY	1 cut(s)	260
Bse1I	ACTGG	3 cut(s)	63, 310, 375
Bse3DI	GCAATG	2 cut(s)	325, 347
BseDI	CCNNGG	1 cut(s)	241
BseMI	GCAATG	2 cut(s)	325, 347
BseNI	ACTGG	3 cut(s)	63, 310, 375
BseRI	GAGGAG	5 cut(s)	105, 108, 111, 168, 202
BseX3I	CGGCCG	1 cut(s)	277
Bsh1236I	CGCG	2 cut(s)	258, 282
Bsh1285I	CGRYCG	1 cut(s)	280
BshFI	GGCC	2 cut(s)	264, 279
BsiEI	CGRYCG	1 cut(s)	280
BsiHKAI	GWGCWC	1 cut(s)	70
BsiSI	CCGG	1 cut(s)	261
BslFI	GGGAC	1 cut(s)	170
BsmAI	GTCTC	1 cut(s)	201
BsmFI	GGGAC	1 cut(s)	170
BsnI	GGCC	2 cut(s)	264, 279
Bsp1286I	GDGCHC	2 cut(s)	70, 303
Bsp143I	GATC	1 cut(s)	3
BspACI	CCGC	4 cut(s)	45, 99, 280, 352
BspANI	GGCC	2 cut(s)	264, 279
BspFNI	CGCG	2 cut(s)	258, 282
BsrDI	GCAATG	2 cut(s)	325, 347
BsrFI	RCCGGY	1 cut(s)	260
BsrI	ACTGG	3 cut(s)	63, 310, 375
BssAI	RCCGGY	1 cut(s)	260
BssECI	CCNNGG	1 cut(s)	241
BssMI	GATC	1 cut(s)	3
BssSI	CACGAG	1 cut(s)	296
Bst2BI	CACGAG	1 cut(s)	296
Bst6I	CTCTTC	1 cut(s)	200
BstC8I	GCNNGC	2 cut(s)	256, 262
BstFNI	CGCG	2 cut(s)	258, 282
BstHHI	GCGC	1 cut(s)	260
BstKTI	GATC	1 cut(s)	6
BstMAI	GTCTC	1 cut(s)	201
BstMBI	GATC	1 cut(s)	3
BstMCI	CGRYCG	1 cut(s)	280
BstMWI	GCNNNNNNNGC	2 cut(s)	307, 358
BstUI	CGCG	2 cut(s)	258, 282
BstZI	CGGCCG	1 cut(s)	277
BsuRI	GGCC	2 cut(s)	264, 279
BtsIMutI	CAGTG	2 cut(s)	70, 303
Cac8I	GCNNGC	2 cut(s)	256, 262
CfoI	GCGC	1 cut(s)	260
Cfr10I	RCCGGY	1 cut(s)	260
Csp6I	GTAC	2 cut(s)	76, 371
CviAII	CATG	1 cut(s)	400
CviJI	RGCY	6 cut(s)	264, 279, 301, 310, 355, 361
CviKI_1	RGCY	6 cut(s)	264, 279, 301, 310, 355, 361
CviQI	GTAC	2 cut(s)	76, 371
DpnI	GATC	1 cut(s)	5
DpnII	GATC	1 cut(s)	3
DrdI	GACNNNNNNGTC	2 cut(s)	197, 215
DseDI	GACNNNNNNGTC	2 cut(s)	197, 215
EaeI	YGGCCR	2 cut(s)	262, 277
EagI	CGGCCG	1 cut(s)	277
Eam1104I	CTCTTC	1 cut(s)	200
EarI	CTCTTC	1 cut(s)	200
EciI	GGCGGA	1 cut(s)	88
EclXI	CGGCCG	1 cut(s)	277
Eco24I	GRGCYC	1 cut(s)	303
Eco52I	CGGCCG	1 cut(s)	277
EcoT38I	GRGCYC	1 cut(s)	303
FaeI	CATG	1 cut(s)	403
FaiI	YATR	3 cut(s)	342, 394, 401
FalI	AAGNNNNNCTT	1 cut(s)	380
FaqI	GGGAC	1 cut(s)	170
FatI	CATG	1 cut(s)	399
FbaI	TGATCA	1 cut(s)	3
FblI	GTMKAC	1 cut(s)	219
Fnu4HI	GCNGC	2 cut(s)	280, 353
FriOI	GRGCYC	1 cut(s)	303
Fsp4HI	GCNGC	2 cut(s)	280, 353
GlaI	GCGC	1 cut(s)	259
GluI	GCNGC	2 cut(s)	280, 353
GsuI	CTGGAG	1 cut(s)	208
HaeIII	GGCC	2 cut(s)	264, 279
HapII	CCGG	1 cut(s)	261
HhaI	GCGC	1 cut(s)	260
Hin1II	CATG	1 cut(s)	403
Hin6I	GCGC	1 cut(s)	258
HinP1I	GCGC	1 cut(s)	258
HincII	GTYRAC	1 cut(s)	220
HindII	GTYRAC	1 cut(s)	220
HinfI	GANTC	5 cut(s)	95, 175, 209, 221, 327
HpaII	CCGG	1 cut(s)	261
HphI	GGTGA	1 cut(s)	28
Hpy166II	GTNNAC	1 cut(s)	220
Hpy188I	TCNGA	2 cut(s)	206, 245
Hpy188III	TCNNGA	1 cut(s)	83
Hpy8I	GTNNAC	1 cut(s)	220
Hpy99I	CGWCG	1 cut(s)	221
HpyCH4V	TGCA	3 cut(s)	30, 318, 347
HpyF10VI	GCNNNNNNNGC	2 cut(s)	307, 358
Hsp92II	CATG	1 cut(s)	403
HspAI	GCGC	1 cut(s)	258
KroI	GCCGGC	1 cut(s)	260
KroNI	GCCGGC	1 cut(s)	262
Ksp22I	TGATCA	1 cut(s)	3
Kzo9I	GATC	1 cut(s)	3
LpnPI	CCDG	6 cut(s)	76, 201, 238, 274, 291, 388
MalI	GATC	1 cut(s)	5
MboI	GATC	1 cut(s)	3
MboII	GAAGA	3 cut(s)	5, 187, 400
MhlI	GDGCHC	2 cut(s)	70, 303
MluCI	AATT	1 cut(s)	235
MlyI	GAGTC	4 cut(s)	89, 169, 203, 215
MnlI	CCTC	9 cut(s)	126, 129, 132, 138, 189, 203, 223, 251, 278
MroNI	GCCGGC	1 cut(s)	260
MseI	TTAA	1 cut(s)	134
MspI	CCGG	1 cut(s)	261
MvnI	CGCG	2 cut(s)	258, 282
MwoI	GCNNNNNNNGC	2 cut(s)	307, 358
NaeI	GCCGGC	1 cut(s)	262
NdeII	GATC	1 cut(s)	3
NgoMIV	GCCGGC	1 cut(s)	260
NlaIII	CATG	1 cut(s)	403
PcsI	WCGNNNNNNNCGW	1 cut(s)	294
PdiI	GCCGGC	1 cut(s)	262
PfeI	GAWTC	1 cut(s)	327
PkrI	GCNGC	2 cut(s)	281, 354
PleI	GAGTC	4 cut(s)	89, 169, 203, 215
PpsI	GAGTC	4 cut(s)	89, 169, 203, 215
RsaI	GTAC	2 cut(s)	77, 372
RsaNI	GTAC	2 cut(s)	76, 371
SalI	GTCGAC	1 cut(s)	218
SaqAI	TTAA	1 cut(s)	134
SatI	GCNGC	2 cut(s)	280, 353
Sau3AI	GATC	1 cut(s)	3
SchI	GAGTC	4 cut(s)	89, 169, 203, 215
SduI	GDGCHC	2 cut(s)	70, 303
SetI	ASST	2 cut(s)	195, 270
SmlI	CTYRAG	1 cut(s)	81
SmoI	CTYRAG	1 cut(s)	81
Sse9I	AATT	1 cut(s)	235
SsiI	CCGC	4 cut(s)	45, 99, 280, 352
TaqI	TCGA	4 cut(s)	93, 219, 288, 336
TasI	AATT	1 cut(s)	235
TauI	GCSGC	2 cut(s)	282, 355
TfiI	GAWTC	1 cut(s)	327
Tru1I	TTAA	1 cut(s)	134
Tru9I	TTAA	1 cut(s)	134
TscAI	CASTG	2 cut(s)	70, 310
TspDTI	ATGAA	1 cut(s)	388
TspGWI	ACGGA	1 cut(s)	205
TspRI	CASTG	2 cut(s)	70, 310
XmiI	GTMKAC	1 cut(s)	219

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.