RLG00000009406

Ethylene-overproduction protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0018134
Physical Location & Seq
Reverse (-)
52461707 .. 52462315
609 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000009406

Sequence Viewer

Length: 528 bp
ATGCGCAGCTGGAAGATCATGGATAGGTGTAAGGGCACCCAGGTTTTTGCCATTTCTCCATCTGGAACTACCCCCACAAATGGTGGAGTAGGAGACAAGGTTAGTCACAGCCGGGTCAACTTAGTTCGATCTAGATCGAACTGGAGTTTCCAAGCCCCGAACCCGACTGGAAACAATGCCTTGGTCGAGAGTCTTCTTCCCTATGAACTCCCATCGATTGAGAATTGTCCGCAATTCGAGAAATCTAAGATGTATGTGGAGCAATGTGTGATCTTTTGGGGTATGTCAGATCCGAAACTGTTTTGGCGGGGTCTCCAGTCGGCGAGGCAGCACGCGGTGGATGTCCATAACAAAGTGGTGCTTGTGGCGTGGTTCAGGTATGAGAGGAGGGAGGATGAGTTGGTTGGGTCATCTTCAATGACTTGTTGCGGTAGAAATGTTGAATGTCCCAAGGCTAGTTTGGTAGCTGGGTATGATCTGGAGTCTGTTTATGAAGAGGACTTGATATATGAGAACATTGCAGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BTB TPR_8

Protein Analysis

176

Amino Acids

19.79

Weight (kDa)

5.95

Isoelectric Point (pI)

50.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 5
AccB1I GGYRCC 1 cut(s) 35
AccII CGCG 1 cut(s) 335
AciI CCGC 4 cut(s) 230, 307, 335, 429
AclWI GGATC 1 cut(s) 284
AdeI CACNNNGTG 1 cut(s) 337
AfiI CCNNNNNNNGG 1 cut(s) 80
AgsI TTSAA 2 cut(s) 417, 443
AjnI CCWGG 1 cut(s) 39
AluBI AGCT 2 cut(s) 9, 467
AluI AGCT 2 cut(s) 9, 467
Alw26I GTCTC 2 cut(s) 87, 317
AlwI GGATC 1 cut(s) 284
ApeKI GCWGC 2 cut(s) 6, 328
AspLEI GCGC 1 cut(s) 6
AsuC2I CCSGG 1 cut(s) 113
BaeGI GKGCMC 1 cut(s) 38
BanI GGYRCC 1 cut(s) 35
BbsI GAAGAC 1 cut(s) 185
BbvI GCAGC 2 cut(s) 18, 340
BccI CCATC 2 cut(s) 67, 220
BciT130I CCWGG 1 cut(s) 41
BcnI CCSGG 1 cut(s) 113
BcoDI GTCTC 2 cut(s) 87, 317
BfaI CTAG 2 cut(s) 132, 456
BisI GCNGC 2 cut(s) 7, 329
BlsI GCNGC 2 cut(s) 8, 330
Bme1390I CCNGG 2 cut(s) 41, 113
BmiI GGNNCC 1 cut(s) 37
BmrFI CCNGG 2 cut(s) 41, 113
BpiI GAAGAC 1 cut(s) 185
BpmI CTGGAG 3 cut(s) 163, 299, 500
BpuMI CCSGG 1 cut(s) 113
Bsa29I ATCGAT 1 cut(s) 215
BsaBI GATNNNNATC 1 cut(s) 133
BsaI GGTCTC 1 cut(s) 317
BsaJI CCNNGG 3 cut(s) 39, 180, 450
BsaXI ACNNNNNCTCC 4 cut(s) 84, 114, 383, 413
Bsc4I CCNNNNNNNGG 1 cut(s) 80
Bse1I ACTGG 3 cut(s) 146, 172, 316
Bse3DI GCAATG 2 cut(s) 269, 516
Bse8I GATNNNNATC 1 cut(s) 133
BseBI CCWGG 1 cut(s) 41
BseCI ATCGAT 1 cut(s) 215
BseDI CCNNGG 3 cut(s) 39, 180, 450
BseGI GGATG 2 cut(s) 346, 400
BseJI GATNNNNATC 1 cut(s) 133
BseLI CCNNNNNNNGG 1 cut(s) 80
BseMI GCAATG 2 cut(s) 269, 516
BseNI ACTGG 3 cut(s) 146, 172, 316
BseRI GAGGAG 1 cut(s) 400
BseSI GKGCMC 1 cut(s) 38
BseXI GCAGC 2 cut(s) 18, 340
BseYI CCCAGC 1 cut(s) 467
Bsh1236I CGCG 1 cut(s) 335
BshNI GGYRCC 1 cut(s) 35
BshVI ATCGAT 1 cut(s) 215
BsiSI CCGG 1 cut(s) 112
BslFI GGGAC 1 cut(s) 432
BslI CCNNNNNNNGG 1 cut(s) 80
BsmAI GTCTC 2 cut(s) 87, 317
BsmFI GGGAC 1 cut(s) 432
Bso31I GGTCTC 1 cut(s) 317
Bsp1286I GDGCHC 1 cut(s) 38
Bsp143I GATC 6 cut(s) 15, 128, 134, 270, 289, 475
BspACI CCGC 4 cut(s) 230, 307, 335, 429
BspDI ATCGAT 1 cut(s) 215
BspFNI CGCG 1 cut(s) 335
BspLI GGNNCC 1 cut(s) 37
BspPI GGATC 1 cut(s) 284
BspT107I GGYRCC 1 cut(s) 35
BspTNI GGTCTC 1 cut(s) 317
BsrDI GCAATG 2 cut(s) 269, 516
BsrI ACTGG 3 cut(s) 146, 172, 316
BssECI CCNNGG 3 cut(s) 39, 180, 450
BssMI GATC 6 cut(s) 15, 128, 134, 270, 289, 475
BssT1I CCWWGG 2 cut(s) 180, 450
Bst2UI CCWGG 1 cut(s) 41
Bst4CI ACNGT 1 cut(s) 300
Bst6I CTCTTC 1 cut(s) 489
BstC8I GCNNGC 1 cut(s) 333
BstDEI CTNAG 2 cut(s) 121, 246
BstF5I GGATG 2 cut(s) 346, 400
BstFNI CGCG 1 cut(s) 335
BstHHI GCGC 1 cut(s) 6
BstKTI GATC 6 cut(s) 18, 131, 137, 273, 292, 478
BstMAI GTCTC 2 cut(s) 87, 317
BstMBI GATC 6 cut(s) 15, 128, 134, 270, 289, 475
BstNI CCWGG 1 cut(s) 41
BstSCI CCNGG 2 cut(s) 39, 111
BstSLI GKGCMC 1 cut(s) 38
BstUI CGCG 1 cut(s) 335
BstV1I GCAGC 2 cut(s) 18, 340
BstV2I GAAGAC 1 cut(s) 185
BstX2I RGATCY 1 cut(s) 289
BstYI RGATCY 1 cut(s) 289
Bsu15I ATCGAT 1 cut(s) 215
BsuTUI ATCGAT 1 cut(s) 215
BtsCI GGATG 2 cut(s) 346, 400
Cac8I GCNNGC 1 cut(s) 333
CfoI GCGC 1 cut(s) 6
ClaI ATCGAT 1 cut(s) 215
CviAII CATG 1 cut(s) 19
CviJI RGCY 5 cut(s) 9, 111, 155, 455, 467
CviKI_1 RGCY 5 cut(s) 9, 111, 155, 455, 467
DdeI CTNAG 2 cut(s) 121, 246
DpnI GATC 6 cut(s) 17, 130, 136, 272, 291, 477
DpnII GATC 6 cut(s) 15, 128, 134, 270, 289, 475
DraIII CACNNNGTG 1 cut(s) 337
Eam1104I CTCTTC 1 cut(s) 489
EarI CTCTTC 1 cut(s) 489
Eco130I CCWWGG 2 cut(s) 180, 450
Eco31I GGTCTC 1 cut(s) 317
EcoRII CCWGG 1 cut(s) 39
EcoT14I CCWWGG 2 cut(s) 180, 450
ErhI CCWWGG 2 cut(s) 180, 450
FaeI CATG 1 cut(s) 22
FalI AAGNNNNNCTT 2 cut(s) 345, 377
FaqI GGGAC 1 cut(s) 432
FatI CATG 1 cut(s) 18
FauI CCCGC 1 cut(s) 300
Fnu4HI GCNGC 2 cut(s) 7, 329
FokI GGATG 2 cut(s) 353, 407
Fsp4HI GCNGC 2 cut(s) 7, 329
FspBI CTAG 2 cut(s) 132, 456
FspI TGCGCA 1 cut(s) 5
GlaI GCGC 1 cut(s) 5
GluI GCNGC 2 cut(s) 7, 329
GsaI CCCAGC 1 cut(s) 471
GsuI CTGGAG 3 cut(s) 163, 299, 500
HapII CCGG 1 cut(s) 112
HhaI GCGC 1 cut(s) 6
Hin1II CATG 1 cut(s) 22
Hin6I GCGC 1 cut(s) 4
HinP1I GCGC 1 cut(s) 4
HincII GTYRAC 1 cut(s) 118
HindII GTYRAC 1 cut(s) 118
HinfI GANTC 2 cut(s) 190, 482
HpaII CCGG 1 cut(s) 112
Hpy166II GTNNAC 1 cut(s) 118
Hpy188I TCNGA 2 cut(s) 289, 294
Hpy188III TCNNGA 5 cut(s) 63, 132, 187, 238, 479
Hpy8I GTNNAC 1 cut(s) 118
HpyCH4III ACNGT 1 cut(s) 300
HpyCH4V TGCA 1 cut(s) 521
HpyF3I CTNAG 2 cut(s) 121, 246
Hsp92II CATG 1 cut(s) 22
HspAI GCGC 1 cut(s) 4
Kzo9I GATC 6 cut(s) 15, 128, 134, 270, 289, 475
LmnI GCTCC 1 cut(s) 259
Lsp1109I GCAGC 2 cut(s) 18, 340
MaeI CTAG 2 cut(s) 132, 456
MaeIII GTNAC 1 cut(s) 104
MalI GATC 6 cut(s) 17, 130, 136, 272, 291, 477
MboI GATC 6 cut(s) 15, 128, 134, 270, 289, 475
MboII GAAGA 5 cut(s) 25, 185, 188, 405, 506
MflI RGATCY 1 cut(s) 289
MhlI GDGCHC 1 cut(s) 38
MluCI AATT 2 cut(s) 223, 233
MlyI GAGTC 2 cut(s) 199, 491
MnlI CCTC 5 cut(s) 318, 378, 381, 385, 490
MspA1I CMGCKG 1 cut(s) 9
MspI CCGG 1 cut(s) 112
MspR9I CCNGG 2 cut(s) 41, 113
MvaI CCWGG 1 cut(s) 41
MvnI CGCG 1 cut(s) 335
NciI CCSGG 1 cut(s) 113
NdeII GATC 6 cut(s) 15, 128, 134, 270, 289, 475
NlaIII CATG 1 cut(s) 22
NlaIV GGNNCC 1 cut(s) 37
NmuCI GTSAC 1 cut(s) 104
NsbI TGCGCA 1 cut(s) 5
PkrI GCNGC 2 cut(s) 8, 330
PleI GAGTC 2 cut(s) 198, 490
PpsI GAGTC 2 cut(s) 198, 490
Psp6I CCWGG 1 cut(s) 39
PspFI CCCAGC 1 cut(s) 467
PspGI CCWGG 1 cut(s) 39
PspN4I GGNNCC 1 cut(s) 37
PsuI RGATCY 1 cut(s) 289
PvuII CAGCTG 1 cut(s) 9
SatI GCNGC 2 cut(s) 7, 329
Sau3AI GATC 6 cut(s) 15, 128, 134, 270, 289, 475
SchI GAGTC 2 cut(s) 199, 491
ScrFI CCNGG 2 cut(s) 41, 113
SduI GDGCHC 1 cut(s) 38
SetI ASST 6 cut(s) 11, 29, 45, 102, 380, 469
Sse9I AATT 2 cut(s) 223, 233
SsiI CCGC 4 cut(s) 230, 307, 335, 429
SspMI CTAG 2 cut(s) 132, 456
StyD4I CCNGG 2 cut(s) 39, 111
StyI CCWWGG 2 cut(s) 180, 450
TaaI ACNGT 1 cut(s) 300
TaqI TCGA 5 cut(s) 127, 137, 186, 215, 237
TasI AATT 2 cut(s) 223, 233
TseFI GTSAC 1 cut(s) 104
TseI GCWGC 2 cut(s) 6, 328
Tsp45I GTSAC 1 cut(s) 104
TspDTI ATGAA 2 cut(s) 219, 507
XbaI TCTAGA 1 cut(s) 131
XcmI CCANNNNNNNNNTGG 1 cut(s) 457
XspI CTAG 2 cut(s) 132, 456
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.