Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0018134

Physical Location & Seq

Genomic Coordinates Reverse (-)

25099892 .. 25100666

Gene Structure 775 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000023542

Sequence Viewer

CDS Protein Promoter (2k)

Length: 633 bp

ATGCTCAGACAGTGGTGCTTGCCTGGCATGAGCTGGAAGATCATGAATGGGTGTAAGGGCACCCAGGCGTTTACCATTAATCCATCTAGAATAACCCCTGCAAATGATGGAGTAGGAGACAAGGTTGGTCACAGCCGGGTCAACTCGGTTCAATCTAGATCGAACTGGAGTTTCCAAGCCCCGAACCCGACCGGAAACAATGCCTTGGTCAAGAGTCTTCTTCCCTATGAACTCCCATCGTTAGATCTCCTTGAGCCCCAAATCGAGCTTTGCCTCAAGATCGTTGATTTTGTCGAAACACTGGCTGATGTGTACCGCAGGATTGAGAATTTTCTGCAATTCGAGAAATCTAAGATGTACGTGGAGCAATGCGCGACCTTTCGAGGTACGTCAGATCTGAAACTGTTCTGGCAGAGTCTCCAATCGGCGAGGCAGCACGTGGTGGATGTCCATACCAAAGTGGTGCTTACGGCGTGGTTCAGGTACAAGAGGAGGGAGGATGAGCTGGTTGGGTCATCTTCAATGACTTGTTGCAGTAGAAATGTTGAATGTCCCAAGGCTAGTTTGGTAGCTGGGTATGATCCGAAGTCTGTTTATGAAGAGGACTTGATATATGAGAAAATTGCAGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BTB TPR_8

Protein Analysis

211

Amino Acids

23.91

Weight (kDa)

7.55

Isoelectric Point (pI)

47.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018134)

Species	Orthologous Gene IDs
pyrus_communis	pycom04g14560 pycom12g16640
rosa_laevigata	RLG00000007193 RLG00000009406 RLG00000014508 RLG00000023542 RLG00000024870 RLG00000031287
rosa_multiflora	Rmu_co8278443.1_g000001 Rmu_sc0009800.1_g000005
rosa_samantha	Rh3BG354700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	59
AccII	CGCG	1 cut(s)	374
AciI	CCGC	1 cut(s)	316
AclWI	GGATC	1 cut(s)	575
AcsI	RAATTY	1 cut(s)	328
AcvI	CACGTG	1 cut(s)	439
AdeI	CACNNNGTG	1 cut(s)	442
AfaI	GTAC	4 cut(s)	314, 359, 388, 485
AgsI	TTSAA	3 cut(s)	152, 522, 548
AjnI	CCWGG	2 cut(s)	22, 63
AluBI	AGCT	4 cut(s)	33, 268, 505, 572
AluI	AGCT	4 cut(s)	33, 268, 505, 572
Alw26I	GTCTC	2 cut(s)	111, 422
AlwI	GGATC	1 cut(s)	575
ApeKI	GCWGC	1 cut(s)	433
ApoI	RAATTY	1 cut(s)	328
AseI	ATTAAT	1 cut(s)	78
Asp700I	GAANNNNTTC	1 cut(s)	404
AspLEI	GCGC	1 cut(s)	374
AsuC2I	CCSGG	1 cut(s)	137
BaeGI	GKGCMC	1 cut(s)	62
BanI	GGYRCC	1 cut(s)	59
BanII	GRGCYC	1 cut(s)	258
BbrPI	CACGTG	1 cut(s)	439
BbsI	GAAGAC	1 cut(s)	209
BbvI	GCAGC	1 cut(s)	445
BccI	CCATC	3 cut(s)	91, 101, 244
BceAI	ACGGC	1 cut(s)	486
BciT130I	CCWGG	2 cut(s)	24, 65
BcnI	CCSGG	1 cut(s)	137
BcoDI	GTCTC	2 cut(s)	111, 422
BfaI	CTAG	3 cut(s)	87, 156, 561
BglII	AGATCT	2 cut(s)	244, 394
BisI	GCNGC	1 cut(s)	434
BlsI	GCNGC	1 cut(s)	435
Bme1390I	CCNGG	3 cut(s)	24, 65, 137
BmiI	GGNNCC	1 cut(s)	61
BmrFI	CCNGG	3 cut(s)	24, 65, 137
BpiI	GAAGAC	1 cut(s)	209
BpmI	CTGGAG	1 cut(s)	187
BpuEI	CTTGAG	2 cut(s)	260, 272
BpuMI	CCSGG	1 cut(s)	137
BsaAI	YACGTR	2 cut(s)	361, 439
BsaJI	CCNNGG	3 cut(s)	63, 204, 555
BsaWI	WCCGGW	1 cut(s)	191
BsaXI	ACNNNNNCTCC	2 cut(s)	108, 138
Bse1I	ACTGG	2 cut(s)	170, 306
Bse3DI	GCAATG	1 cut(s)	374
BseBI	CCWGG	2 cut(s)	24, 65
BseDI	CCNNGG	3 cut(s)	63, 204, 555
BseGI	GGATG	2 cut(s)	451, 505
BseMI	GCAATG	1 cut(s)	374
BseMII	CTCAG	1 cut(s)	19
BseNI	ACTGG	2 cut(s)	170, 306
BseRI	GAGGAG	1 cut(s)	505
BseSI	GKGCMC	1 cut(s)	62
BseXI	GCAGC	1 cut(s)	445
BseYI	CCCAGC	1 cut(s)	572
Bsh1236I	CGCG	1 cut(s)	374
Bsh1285I	CGRYCG	1 cut(s)	192
BshNI	GGYRCC	1 cut(s)	59
BsiEI	CGRYCG	1 cut(s)	192
BsiSI	CCGG	2 cut(s)	136, 192
BslFI	GGGAC	1 cut(s)	537
BsmAI	GTCTC	2 cut(s)	111, 422
BsmFI	GGGAC	1 cut(s)	537
Bsp1286I	GDGCHC	2 cut(s)	62, 258
Bsp143I	GATC	6 cut(s)	39, 158, 244, 279, 394, 580
BspACI	CCGC	1 cut(s)	316
BspCNI	CTCAG	1 cut(s)	18
BspFNI	CGCG	1 cut(s)	374
BspHI	TCATGA	1 cut(s)	42
BspLI	GGNNCC	1 cut(s)	61
BspPI	GGATC	1 cut(s)	575
BspT107I	GGYRCC	1 cut(s)	59
BsrDI	GCAATG	1 cut(s)	374
BsrI	ACTGG	2 cut(s)	170, 306
BssECI	CCNNGG	3 cut(s)	63, 204, 555
BssMI	GATC	6 cut(s)	39, 158, 244, 279, 394, 580
BssT1I	CCWWGG	2 cut(s)	204, 555
Bst2UI	CCWGG	2 cut(s)	24, 65
Bst4CI	ACNGT	2 cut(s)	12, 405
Bst6I	CTCTTC	1 cut(s)	594
BstBAI	YACGTR	2 cut(s)	361, 439
BstC8I	GCNNGC	1 cut(s)	20
BstDEI	CTNAG	2 cut(s)	5, 351
BstF5I	GGATG	2 cut(s)	451, 505
BstFNI	CGCG	1 cut(s)	374
BstHHI	GCGC	1 cut(s)	374
BstKTI	GATC	6 cut(s)	42, 161, 247, 282, 397, 583
BstMAI	GTCTC	2 cut(s)	111, 422
BstMBI	GATC	6 cut(s)	39, 158, 244, 279, 394, 580
BstMCI	CGRYCG	1 cut(s)	192
BstMWI	GCNNNNNNNGC	1 cut(s)	24
BstNI	CCWGG	2 cut(s)	24, 65
BstSCI	CCNGG	3 cut(s)	22, 63, 135
BstSLI	GKGCMC	1 cut(s)	62
BstUI	CGCG	1 cut(s)	374
BstV1I	GCAGC	1 cut(s)	445
BstV2I	GAAGAC	1 cut(s)	209
BstX2I	RGATCY	2 cut(s)	244, 394
BstYI	RGATCY	2 cut(s)	244, 394
BtsCI	GGATG	2 cut(s)	451, 505
BtsIMutI	CAGTG	2 cut(s)	17, 299
Cac8I	GCNNGC	1 cut(s)	20
CciI	TCATGA	1 cut(s)	42
CfoI	GCGC	1 cut(s)	374
Csp6I	GTAC	4 cut(s)	313, 358, 387, 484
CviAII	CATG	2 cut(s)	28, 43
CviJI	RGCY	9 cut(s)	33, 135, 179, 256, 268, 305, 505, 560, 572
CviKI_1	RGCY	9 cut(s)	33, 135, 179, 256, 268, 305, 505, 560, 572
CviQI	GTAC	4 cut(s)	313, 358, 387, 484
DdeI	CTNAG	2 cut(s)	5, 351
DpnI	GATC	6 cut(s)	41, 160, 246, 281, 396, 582
DpnII	GATC	6 cut(s)	39, 158, 244, 279, 394, 580
DraIII	CACNNNGTG	1 cut(s)	442
Eam1104I	CTCTTC	1 cut(s)	594
EarI	CTCTTC	1 cut(s)	594
Eco130I	CCWWGG	2 cut(s)	204, 555
Eco24I	GRGCYC	1 cut(s)	258
Eco72I	CACGTG	1 cut(s)	439
EcoRII	CCWGG	2 cut(s)	22, 63
EcoT14I	CCWWGG	2 cut(s)	204, 555
EcoT38I	GRGCYC	1 cut(s)	258
ErhI	CCWWGG	2 cut(s)	204, 555
FaeI	CATG	2 cut(s)	31, 46
FaiI	YATR	8 cut(s)	29, 44, 228, 453, 579, 597, 613, 615
FalI	AAGNNNNNCTT	2 cut(s)	450, 482
FaqI	GGGAC	1 cut(s)	537
FatI	CATG	2 cut(s)	27, 42
Fnu4HI	GCNGC	1 cut(s)	434
FokI	GGATG	2 cut(s)	458, 512
FriOI	GRGCYC	1 cut(s)	258
Fsp4HI	GCNGC	1 cut(s)	434
FspBI	CTAG	3 cut(s)	87, 156, 561
GlaI	GCGC	1 cut(s)	373
GluI	GCNGC	1 cut(s)	434
GsaI	CCCAGC	1 cut(s)	576
GsuI	CTGGAG	1 cut(s)	187
HapII	CCGG	2 cut(s)	136, 192
HhaI	GCGC	1 cut(s)	374
Hin1II	CATG	2 cut(s)	31, 46
Hin6I	GCGC	1 cut(s)	372
HinP1I	GCGC	1 cut(s)	372
HincII	GTYRAC	1 cut(s)	142
HindII	GTYRAC	1 cut(s)	142
HinfI	GANTC	2 cut(s)	214, 415
HpaII	CCGG	2 cut(s)	136, 192
Hpy166II	GTNNAC	3 cut(s)	72, 142, 313
Hpy188I	TCNGA	4 cut(s)	8, 394, 399, 585
Hpy188III	TCNNGA	6 cut(s)	43, 87, 156, 211, 277, 343
Hpy8I	GTNNAC	3 cut(s)	72, 142, 313
HpyCH4III	ACNGT	2 cut(s)	12, 405
HpyCH4IV	ACGT	3 cut(s)	360, 389, 438
HpyCH4V	TGCA	4 cut(s)	101, 337, 534, 626
HpyF10VI	GCNNNNNNNGC	1 cut(s)	24
HpyF3I	CTNAG	2 cut(s)	5, 351
HpySE526I	ACGT	3 cut(s)	360, 389, 438
Hsp92II	CATG	2 cut(s)	31, 46
HspAI	GCGC	1 cut(s)	372
Kzo9I	GATC	6 cut(s)	39, 158, 244, 279, 394, 580
LmnI	GCTCC	1 cut(s)	364
Lsp1109I	GCAGC	1 cut(s)	445
MaeI	CTAG	3 cut(s)	87, 156, 561
MaeII	ACGT	3 cut(s)	360, 389, 438
MaeIII	GTNAC	1 cut(s)	128
MalI	GATC	6 cut(s)	41, 160, 246, 281, 396, 582
MboI	GATC	6 cut(s)	39, 158, 244, 279, 394, 580
MboII	GAAGA	5 cut(s)	49, 209, 212, 510, 611
MflI	RGATCY	2 cut(s)	244, 394
MhlI	GDGCHC	2 cut(s)	62, 258
MluCI	AATT	3 cut(s)	328, 338, 621
MlyI	GAGTC	2 cut(s)	223, 424
MnlI	CCTC	7 cut(s)	284, 377, 423, 483, 486, 490, 595
MroXI	GAANNNNTTC	1 cut(s)	404
MseI	TTAA	1 cut(s)	78
MspI	CCGG	2 cut(s)	136, 192
MspR9I	CCNGG	3 cut(s)	24, 65, 137
MvaI	CCWGG	2 cut(s)	24, 65
MvnI	CGCG	1 cut(s)	374
MwoI	GCNNNNNNNGC	1 cut(s)	24
NciI	CCSGG	1 cut(s)	137
NdeII	GATC	6 cut(s)	39, 158, 244, 279, 394, 580
NlaIII	CATG	2 cut(s)	31, 46
NlaIV	GGNNCC	1 cut(s)	61
NmuCI	GTSAC	1 cut(s)	128
PagI	TCATGA	1 cut(s)	42
PdmI	GAANNNNTTC	1 cut(s)	404
PkrI	GCNGC	1 cut(s)	435
PleI	GAGTC	2 cut(s)	222, 423
PmaCI	CACGTG	1 cut(s)	439
PmlI	CACGTG	1 cut(s)	439
PpsI	GAGTC	2 cut(s)	222, 423
Ppu21I	YACGTR	2 cut(s)	361, 439
PshBI	ATTAAT	1 cut(s)	78
Psp6I	CCWGG	2 cut(s)	22, 63
PspCI	CACGTG	1 cut(s)	439
PspFI	CCCAGC	1 cut(s)	572
PspGI	CCWGG	2 cut(s)	22, 63
PspN4I	GGNNCC	1 cut(s)	61
PsuI	RGATCY	2 cut(s)	244, 394
RsaI	GTAC	4 cut(s)	314, 359, 388, 485
RsaNI	GTAC	4 cut(s)	313, 358, 387, 484
SaqAI	TTAA	1 cut(s)	78
SatI	GCNGC	1 cut(s)	434
Sau3AI	GATC	6 cut(s)	39, 158, 244, 279, 394, 580
SchI	GAGTC	2 cut(s)	223, 424
ScrFI	CCNGG	3 cut(s)	24, 65, 137
SduI	GDGCHC	2 cut(s)	62, 258
SmlI	CTYRAG	2 cut(s)	251, 275
SmoI	CTYRAG	2 cut(s)	251, 275
Sse9I	AATT	3 cut(s)	328, 338, 621
SsiI	CCGC	1 cut(s)	316
SspMI	CTAG	3 cut(s)	87, 156, 561
StyD4I	CCNGG	3 cut(s)	22, 63, 135
StyI	CCWWGG	2 cut(s)	204, 555
TaaI	ACNGT	2 cut(s)	12, 405
TaiI	ACGT	3 cut(s)	363, 392, 441
TaqI	TCGA	5 cut(s)	161, 264, 294, 342, 382
TasI	AATT	3 cut(s)	328, 338, 621
Tru1I	TTAA	1 cut(s)	78
Tru9I	TTAA	1 cut(s)	78
TscAI	CASTG	2 cut(s)	17, 306
TseFI	GTSAC	1 cut(s)	128
TseI	GCWGC	1 cut(s)	433
Tsp45I	GTSAC	1 cut(s)	128
TspDTI	ATGAA	3 cut(s)	59, 243, 612
TspRI	CASTG	2 cut(s)	17, 306
VspI	ATTAAT	1 cut(s)	78
XapI	RAATTY	1 cut(s)	328
XbaI	TCTAGA	2 cut(s)	86, 155
XcmI	CCANNNNNNNNNTGG	1 cut(s)	562
XmnI	GAANNNNTTC	1 cut(s)	404
XspI	CTAG	3 cut(s)	87, 156, 561

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.