Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0010483

Physical Location & Seq

Genomic Coordinates Forward (+)

8490184 .. 8500252

Gene Structure 10069 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000011314

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3276 bp

ATGGAGAGGTTTTCACAAAGAGAGAGCACTATTTTAGGCTACAGTCCTCAAAATTCCTTCATCAACTCTGGCTCTTCGCCCCGCAGTCCCTACAAGAACTCAGATGTTGATTTCCATGATGTGTTTGGTGGCCCGCCGAGGCAATCATCGATTCAAGATATGAGGTACAGCTTCAACGATGTTACAGTTACCAGTGCACCCAAAGGGGATGATGATGATGAGGAAGGTTCGTCTGAGAAGCCGGTTTTTGGGGGAGAGTCCCACAATAGAATGCGGACTCACAGTGATGACTTCTTTGATGACATATTTAAAGCCAGCAATTCAGTGAGTTCTAGTCCGAGGAGGCTTCAACGGGACCCTTATTCTTCTTCTCCAGGTTCTCGGGTTCTAAGTCCGGCACGGCCCCTGCCGCCTAAACCAGAATCTTCTCTGGGTTCCTCACTGCCACCACAATTCAGCCTGCCTGCCAAATTGACCAAAGGGGTGGACTCTTCTCCAACAATTGGTGCCATTACTCGCTCGACTTCTCTTTCTAGATTTTCAAGCCAAGCATTTCAAAGTTCTGAAAACTTGAAAAGTGACATTCGGTCATCACTTCGCATGAGCCATTTTTCCCAGGACTTTTCTGTTACCGGTGAAGGGTCCTCAAACTTGGCCAAGACTGACAAAGATGATACAGGAGGCAATTTGGAACAGGATTCTAAGAGTTCCCAAAGTCCAACTAGTAGCAATCTGTTTCAGTTTCATTTCTCAATATACAAGTGGGCTAGCAAGCCAATGGTGATGCCTCTTAGGGGAAGGAGTGGTTCAAGAGCGCAAGCGACTAAAAATGAGGAGCAATCAAGCACTTGTGAATACGCTGGTAACAAGAGTATTGGAAGGAAATCACCTATATCCACTCTGCCTAGTACTGATTTTACCTCCATTGATCACCCGCTGACAGATTCTACGTCGTCCAAGTTGGAAAGCAACAAACAAGAAAATGATTTGCTTCTTGATGAAAGCATTACCAACAAAGTAGAAGAACAGCCAAGTCGATTCAATGAGGAGACAATTCTTCCTGTAGTTGAATCTTCAGAAACTTTCCGCAGCCTTTGTAGTACTGTTGAAGATGTAGCTGGTGCCACTGTTTCATGCCAATGGCCAAAAAAAGATACCGATTCATGCCATTGGCCGAAAAAAGACACCGATTCATGCCATTGGCCGAAAAAAGACACCGATTCATGCCATTGGCCGAAAAAAGACACCGATTCATGCCAGGCTAGTGAAGATATAGAGCCTCGTCCTCTGCTTCAAACAGCTTGTGAAGATCCACAAGTAAAAGTTCATGTGCTTATGGAACAACTGCACAAGCCTGAGATAAAGCCTACTCATTCTCTGTTTTTTGATAATGATCTTGGAGAAGGAACAAAGGAGATAACTAAATTGGCTGGTAAAACGGAAAGCCTGGTCGAAGCCACCAACAAATCATCTGTAGATGTTGGTTCTAGTAGAAATGTGAAAAATCAGAATGGAAAAAGAAGTTCCTTGACTAATGTTCAAGTTGATAAAGCTGGTGTCCAAGGTTCACTTCAGAAATTGGGAGACAATCTTGGGAGAAACAAAGTCAAGGGAACGGTTAAGGATTTTGTTAAAATGTTCAACCAAGAAGCATTGTCAAAACCCAAAGATGATGATGACTTTGGAAGTCGGCGCTTTAAACGGAAGGAGAAAAATCCTATTGAATCGGTGAATGAAGCAAGTATAAGCACAACTATAATGCATGAGGAATTACAAAATTCCAATGTGAAGAAAACATTTCCAGATGCTTCTTCCATCAAGATAAAAGAAGATCTCAAACGTTCAGAGAAAGAAGCTTTTGAAGCAAAGACTGCTAGCTTTATCCTTAATAATGTTCCTAAGCAGTATGCCTCAGCTTCAAGTACTGGATCAGTTGCCAACTGCTCTAAGGCAAATACTGGAGATTTAGATGAGTCCTTCCATGAAAACTTCCAGATCAAAGAATTAACTCAAGATGAGAAGAAACCGCCAGTAGTTGGCAATAATCATGAAGAGTTGCAGGTTATTGATGCCAAAATCCGGCAGTGGTCAAAGGGAAAGGAAGGAAACATACGCTCACTGCTCACTACTATGCAACATATTGTTTGGCCTGAGAGCGGGTGGAAGACGGTACCTCTAGTTGATATAATTGAAGGTAATGCTGTGAAAAGATCATATCAAAGGGCTTTACTCTGTTTACACCCAGATAAACTACAACAGAAAGGAGCTACTTCACAACAGAAATACATTGCAGAAAAAGTCTTTGATATCTTGCAGCTTCTTCAGTATTTTGTGGCCACCAGTTGGAAGTTGGAGGAATACGAAGAGCTCTCTCTCTCTCTCTCTCATAGCGGTTGTTGGTTACTGAAGCACAGAGCTAGCTTCTGCTGCTGGGTTTTGCTGGGCTCCAATGGCTTCTGTCTTCTCTTAATCTACTGGAGGCAAGCATTGACTGTTTTCTGGTCACACTATCAACAAAACATGAAATTTGAATTAAAGAAAAGATGGAAATCAATTGTCCCACTTCAGTTGAAACACAAATCAGCCACCCGTTTTTCTTTATTTCCCAAATCGAAGTCAGATTTTGGTCCAGGCAAAGCACCTGTATATCTCAATGTATATGACTTAACACCCATGAATGGCTATGTCTATTGGGCAGGCTTTGGAATTTTTCACTCTGGTGTTGAAGTTCATGGTGTTGAATTTGCATTTGGAGCACATGACTACCCTACCAGTGGTGTTTTTGAGGTTGAACCTCGGCAATGCCCAGGATTCAAGTTCAGGAAATCTATATTTATTGGGACCACAAGCTTAGACCCTATTCAGGTTAGAGAGTTCATGGAGCGCCAGTCATTGAGGTACAATGGTGATACATATCACCTGATTGTCAAGAATTGCAACCATTTCTGCAGAGATATCTGTTACAAGCTAACTGGGAAATCAATTCCAAAGTGGGTAAATCGACTGGCAAGAATAGGTTCAATATGCAACTGCATACTTCCTGAAGCGCTAAAGATTTCTGCTGTGCAACATGACCCTAACAACCAACCATATGATAGTGAGAAGAGGAGTTTGAGAAGTGCCTTCAGTTGCCTGTCTTCTATCTCAATGCGGCAGAAGCAATTGTCATCATCTTCATTGTTTCTACAGTCACCCTTGAAAGGCTGCTTGCCACCATGGGAATTAAGAAGGTCAAACAATGGTTCCTTGAAGGAAAGACACTCAGCCTCGGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006897 GO:0006898 GO:0006996 GO:0007010 GO:0007015 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009637 GO:0009657 GO:0009658 GO:0009902 GO:0009903 GO:0009904 GO:0009987 GO:0016043 GO:0016192 GO:0019750 GO:0030029 GO:0030036 GO:0031982 GO:0043226 GO:0043227 GO:0044424 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0051644 GO:0051649 GO:0051656 GO:0051667 GO:0051716 GO:0071214 GO:0071478 GO:0071482 GO:0071483 GO:0071840 GO:0097435 GO:0098657 GO:0104004

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

1092

Amino Acids

122.33

Weight (kDa)

8.52

Isoelectric Point (pI)

54.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_C97	PF05903	881 - 1016	4.4e-48	PPPDE putative peptidase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0010483)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G75100
fragaria_vesca	FvH4_2g40090
malus_domestica	MD08G1032500.v1.1 MD15G1029200.v1.1
prunus_persica	Prupe.1G382200_v2.0.a1 Prupe.1G382200_v2.0.a1
pyrus_communis	pycom08g02580 pycom15g02590
rosa_chinensis	RchiOBHm_Chr6g0300651
rosa_laevigata	RLG00000011314
rosa_multiflora	Rmu_co8005646.1_g000001 Rmu_sc0004226.1_g000015 Rmu_sc0014374.1_g000001
rosa_roxburghii	Rroxscaffold_7G00167530
rosa_rugosa	Rorug06G0298200
rosa_samantha	Rh6AG410800 Rh6BG418000 Rh6CG425500 Rh6DG410900
rosa_wichuraiana	Rw0G002200 Rw6G035940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	2050
Acc65I	GGTACC	1 cut(s)	2170
AccB1I	GGYRCC	3 cut(s)	506, 1121, 2170
AccB7I	CCANNNNNTGG	3 cut(s)	503, 2036, 2343
AccBSI	CCGCTC	1 cut(s)	2157
AclI	AACGTT	1 cut(s)	1840
AclWI	GGATC	2 cut(s)	1304, 1936
AcoI	YGGCCR	6 cut(s)	654, 1142, 1172, 1202, 1232, 2334
AcsI	RAATTY	5 cut(s)	52, 1777, 2525, 2706, 2741
AcuI	CTGAAG	7 cut(s)	1059, 1556, 2306, 2426, 2549, 3063, 3109
AfaI	GTAC	6 cut(s)	167, 910, 1102, 1924, 2172, 2900
AfeI	AGCGCT	1 cut(s)	3048
AgeI	ACCGGT	1 cut(s)	632
AhdI	GACNNNNNGTC	1 cut(s)	586
AhlI	ACTAGT	1 cut(s)	722
AjnI	CCWGG	6 cut(s)	373, 615, 1257, 1446, 2629, 2806
AjuI	GAANNNNNNNTTGG	4 cut(s)	1554, 1586, 2733, 2765
AleI	CACNNNNGTG	1 cut(s)	2718
Alw21I	GWGCWC	4 cut(s)	29, 199, 2370, 2758
Alw26I	GTCTC	2 cut(s)	1043, 1578
Alw44I	GTGCAC	1 cut(s)	195
AlwI	GGATC	2 cut(s)	1304, 1936
Ama87I	CYCGRG	1 cut(s)	381
Aor51HI	AGCGCT	1 cut(s)	3048
AoxI	GGCC	9 cut(s)	130, 401, 654, 1142, 1172, 1202, 1232, 2147, 2334
ApaLI	GTGCAC	1 cut(s)	195
ApeKI	GCWGC	4 cut(s)	1089, 2314, 2427, 3204
ApoI	RAATTY	5 cut(s)	52, 1777, 2525, 2706, 2741
AsiGI	ACCGGT	1 cut(s)	632
Asp700I	GAANNNNTTC	1 cut(s)	3016
Asp718I	GGTACC	1 cut(s)	2170
AspLEI	GCGC	4 cut(s)	817, 1695, 2886, 3049
AspS9I	GGNCC	6 cut(s)	131, 355, 402, 642, 2627, 2841
AsuHPI	GGTGA	8 cut(s)	647, 793, 879, 923, 1741, 2909, 2918, 3183
AsuNHI	GCTAGC	3 cut(s)	767, 1874, 2417
AvaI	CYCGRG	1 cut(s)	381
AvaII	GGWCC	4 cut(s)	355, 642, 2627, 2841
BaeGI	GKGCMC	1 cut(s)	199
BaeI	ACNNNNGTAYC	2 cut(s)	2890, 2923
BalI	TGGCCA	3 cut(s)	656, 1144, 2336
BanI	GGYRCC	3 cut(s)	506, 1121, 2170
BanII	GRGCYC	2 cut(s)	2370, 2447
BarI	GAAGNNNNNNTAC	2 cut(s)	2094, 2126
BbsI	GAAGAC	3 cut(s)	2171, 2453, 3129
Bbv12I	GWGCWC	4 cut(s)	29, 199, 2370, 2758
BbvCI	CCTCAGC	1 cut(s)	1912
BbvI	GCAGC	4 cut(s)	1101, 2326, 2414, 3191
BccI	CCATC	2 cut(s)	1823, 2538
BceAI	ACGGC	1 cut(s)	416
BciT130I	CCWGG	6 cut(s)	375, 617, 1259, 1448, 2631, 2808
BclI	TGATCA	1 cut(s)	928
BcoDI	GTCTC	2 cut(s)	1043, 1578
BcuI	ACTAGT	1 cut(s)	722
BfmI	CTRYAG	5 cut(s)	40, 1062, 1473, 2947, 3185
BfoI	RGCGCY	3 cut(s)	1696, 2887, 3050
BfuAI	ACCTGC	1 cut(s)	2050
BglII	AGATCT	1 cut(s)	1831
BisI	GCNGC	6 cut(s)	410, 1090, 2315, 2428, 3152, 3205
BlsI	GCNGC	6 cut(s)	411, 1091, 2316, 2429, 3153, 3206
BmcAI	AGTACT	3 cut(s)	910, 1102, 1924
Bme1390I	CCNGG	6 cut(s)	375, 617, 1259, 1448, 2631, 2808
Bme18I	GGWCC	4 cut(s)	355, 642, 2627, 2841
BmeRI	GACNNNNNGTC	1 cut(s)	586
BmeT110I	CYCGRG	1 cut(s)	381
BmgT120I	GGNCC	6 cut(s)	131, 355, 402, 642, 2627, 2841
BmrFI	CCNGG	6 cut(s)	375, 617, 1259, 1448, 2631, 2808
BmrI	ACTGGG	1 cut(s)	2982
BmsI	GCATC	3 cut(s)	774, 1795, 2059
BmtI	GCTAGC	3 cut(s)	771, 1878, 2421
BmuI	ACTGGG	1 cut(s)	2982
BpiI	GAAGAC	3 cut(s)	2171, 2453, 3129
BpmI	CTGGAG	3 cut(s)	357, 1980, 2497
Bpu10I	CCTNAGC	2 cut(s)	1899, 1912
BpuEI	CTTGAG	1 cut(s)	1995
Bsa29I	ATCGAT	1 cut(s)	149
BsaBI	GATNNNNATC	3 cut(s)	1392, 2548, 2913
BsaJI	CCNNGG	8 cut(s)	137, 338, 615, 1561, 2795, 2806, 3215, 3267
BsaWI	WCCGGW	1 cut(s)	632
BsaXI	ACNNNNNCTCC	2 cut(s)	2873, 2903
Bse118I	RCCGGY	2 cut(s)	241, 632
Bse3DI	GCAATG	2 cut(s)	2286, 2807
Bse8I	GATNNNNATC	3 cut(s)	1392, 2548, 2913
BseBI	CCWGG	6 cut(s)	375, 617, 1259, 1448, 2631, 2808
BseCI	ATCGAT	1 cut(s)	149
BseDI	CCNNGG	8 cut(s)	137, 338, 615, 1561, 2795, 2806, 3215, 3267
BseGI	GGATG	1 cut(s)	214
BseJI	GATNNNNATC	3 cut(s)	1392, 2548, 2913
BseMI	GCAATG	2 cut(s)	2286, 2807
BseMII	CTCAG	6 cut(s)	114, 225, 1347, 1926, 2142, 3276
BseRI	GAGGAG	4 cut(s)	355, 848, 1061, 3121
BseSI	GKGCMC	1 cut(s)	199
BseXI	GCAGC	4 cut(s)	1101, 2326, 2414, 3191
BseYI	CCCAGC	2 cut(s)	2430, 2440
BsgI	GTGCAG	1 cut(s)	1331
BshFI	GGCC	9 cut(s)	132, 403, 656, 1144, 1174, 1204, 1234, 2149, 2336
BshNI	GGYRCC	3 cut(s)	506, 1121, 2170
BshTI	ACCGGT	1 cut(s)	632
BshVI	ATCGAT	1 cut(s)	149
BsiHKAI	GWGCWC	4 cut(s)	29, 199, 2370, 2758
BsiHKCI	CYCGRG	1 cut(s)	381
BsiSI	CCGG	4 cut(s)	242, 395, 633, 2080
BslFI	GGGAC	5 cut(s)	72, 244, 368, 2543, 2854
BsmAI	GTCTC	2 cut(s)	1043, 1578
BsmFI	GGGAC	5 cut(s)	72, 244, 368, 2543, 2854
BsmI	GAATGC	1 cut(s)	276
BsnI	GGCC	9 cut(s)	132, 403, 656, 1144, 1174, 1204, 1234, 2149, 2336
BsoBI	CYCGRG	1 cut(s)	381
Bsp1286I	GDGCHC	5 cut(s)	29, 199, 2370, 2447, 2758
Bsp143I	GATC	7 cut(s)	928, 1309, 1393, 1831, 1928, 1995, 2210
Bsp19I	CCATGG	1 cut(s)	3215
BspANI	GGCC	9 cut(s)	132, 403, 656, 1144, 1174, 1204, 1234, 2149, 2336
BspCNI	CTCAG	6 cut(s)	113, 226, 1348, 1925, 2143, 3275
BspDI	ATCGAT	1 cut(s)	149
BspHI	TCATGA	1 cut(s)	2047
BspMAI	CTGCAG	1 cut(s)	2951
BspMI	ACCTGC	1 cut(s)	2050
BspOI	GCTAGC	3 cut(s)	771, 1878, 2421
BspPI	GGATC	2 cut(s)	1304, 1936
BspQI	GCTCTTC	2 cut(s)	79, 2358
BspT107I	GGYRCC	3 cut(s)	506, 1121, 2170
BsrBI	CCGCTC	1 cut(s)	2157
BsrDI	GCAATG	2 cut(s)	2286, 2807
BsrFI	RCCGGY	2 cut(s)	241, 632
BssAI	RCCGGY	2 cut(s)	241, 632
BssECI	CCNNGG	8 cut(s)	137, 338, 615, 1561, 2795, 2806, 3215, 3267
BssMI	GATC	7 cut(s)	928, 1309, 1393, 1831, 1928, 1995, 2210
BssT1I	CCWWGG	2 cut(s)	1561, 3215
Bst2UI	CCWGG	6 cut(s)	375, 617, 1259, 1448, 2631, 2808
Bst4CI	ACNGT	9 cut(s)	44, 187, 284, 1105, 1129, 1618, 2170, 2494, 3189
Bst6I	CTCTTC	5 cut(s)	79, 496, 2046, 2358, 3098
BstAPI	GCANNNNNTGC	1 cut(s)	1871
BstDSI	CCRYGG	1 cut(s)	3215
BstF5I	GGATG	1 cut(s)	214
BstH2I	RGCGCY	3 cut(s)	1696, 2887, 3050
BstHHI	GCGC	4 cut(s)	817, 1695, 2886, 3049
BstKTI	GATC	7 cut(s)	931, 1312, 1396, 1834, 1931, 1998, 2213
BstMAI	GTCTC	2 cut(s)	1043, 1578
BstMBI	GATC	7 cut(s)	928, 1309, 1393, 1831, 1928, 1995, 2210
BstMWI	GCNNNNNNNGC	7 cut(s)	409, 1862, 1871, 2427, 2451, 2753, 3157
BstNI	CCWGG	6 cut(s)	375, 617, 1259, 1448, 2631, 2808
BstSCI	CCNGG	6 cut(s)	373, 615, 1257, 1446, 2629, 2806
BstSFI	CTRYAG	5 cut(s)	40, 1062, 1473, 2947, 3185
BstSLI	GKGCMC	1 cut(s)	199
BstV1I	GCAGC	4 cut(s)	1101, 2326, 2414, 3191
BstV2I	GAAGAC	3 cut(s)	2171, 2453, 3129
BstX2I	RGATCY	2 cut(s)	1309, 1831
BstXI	CCANNNNNNTGG	1 cut(s)	484
BstYI	RGATCY	2 cut(s)	1309, 1831
Bsu15I	ATCGAT	1 cut(s)	149
BsuRI	GGCC	9 cut(s)	132, 403, 656, 1144, 1174, 1204, 1234, 2149, 2336
BsuTUI	ATCGAT	1 cut(s)	149
BtgI	CCRYGG	1 cut(s)	3215
BtsCI	GGATG	1 cut(s)	214
BtsI	GCAGTG	3 cut(s)	440, 2090, 2117
BtsIMutI	CAGTG	8 cut(s)	199, 289, 330, 440, 1125, 2090, 2117, 2779
BveI	ACCTGC	1 cut(s)	2050
CciI	TCATGA	1 cut(s)	2047
CfoI	GCGC	4 cut(s)	817, 1695, 2886, 3049
Cfr10I	RCCGGY	2 cut(s)	241, 632
Cfr13I	GGNCC	6 cut(s)	131, 355, 402, 642, 2627, 2841
ClaI	ATCGAT	1 cut(s)	149
Csp6I	GTAC	6 cut(s)	166, 909, 1101, 1923, 2171, 2899
CspAI	ACCGGT	1 cut(s)	632
CspCI	CAANNNNNGTGG	2 cut(s)	2550, 2585
CviQI	GTAC	6 cut(s)	166, 909, 1101, 1923, 2171, 2899
DpnI	GATC	7 cut(s)	930, 1311, 1395, 1833, 1930, 1997, 2212
DpnII	GATC	7 cut(s)	928, 1309, 1393, 1831, 1928, 1995, 2210
DraI	TTTAAA	2 cut(s)	310, 1699
DriI	GACNNNNNGTC	1 cut(s)	586
EaeI	YGGCCR	6 cut(s)	654, 1142, 1172, 1202, 1232, 2334
Eam1104I	CTCTTC	5 cut(s)	79, 496, 2046, 2358, 3098
Eam1105I	GACNNNNNGTC	1 cut(s)	586
EarI	CTCTTC	5 cut(s)	79, 496, 2046, 2358, 3098
Ecl136II	GAGCTC	1 cut(s)	2368
Eco130I	CCWWGG	2 cut(s)	1561, 3215
Eco24I	GRGCYC	2 cut(s)	2370, 2447
Eco32I	GATATC	2 cut(s)	2308, 2956
Eco47I	GGWCC	4 cut(s)	355, 642, 2627, 2841
Eco47III	AGCGCT	1 cut(s)	3048
Eco53kI	GAGCTC	1 cut(s)	2368
Eco57I	CTGAAG	7 cut(s)	1059, 1556, 2306, 2426, 2549, 3063, 3109
Eco88I	CYCGRG	1 cut(s)	381
EcoICRI	GAGCTC	1 cut(s)	2368
EcoO109I	RGGNCCY	2 cut(s)	355, 642
EcoRII	CCWGG	6 cut(s)	373, 615, 1257, 1446, 2629, 2806
EcoRV	GATATC	2 cut(s)	2308, 2956
EcoT14I	CCWWGG	2 cut(s)	1561, 3215
EcoT22I	ATGCAT	1 cut(s)	1764
EcoT38I	GRGCYC	2 cut(s)	2370, 2447
ErhI	CCWWGG	2 cut(s)	1561, 3215
FalI	AAGNNNNNCTT	2 cut(s)	1554, 1586
FaqI	GGGAC	5 cut(s)	72, 244, 368, 2543, 2854
FauI	CCCGC	4 cut(s)	89, 141, 942, 2150
FauNDI	CATATG	1 cut(s)	3091
FbaI	TGATCA	1 cut(s)	928
Fnu4HI	GCNGC	6 cut(s)	410, 1090, 2315, 2428, 3152, 3205
FokI	GGATG	1 cut(s)	221
FriOI	GRGCYC	2 cut(s)	2370, 2447
Fsp4HI	GCNGC	6 cut(s)	410, 1090, 2315, 2428, 3152, 3205
GlaI	GCGC	4 cut(s)	816, 1694, 2885, 3048
GluI	GCNGC	6 cut(s)	410, 1090, 2315, 2428, 3152, 3205
GsaI	CCCAGC	2 cut(s)	2434, 2444
GsuI	CTGGAG	3 cut(s)	357, 1980, 2497
HaeII	RGCGCY	3 cut(s)	1696, 2887, 3050
HaeIII	GGCC	9 cut(s)	132, 403, 656, 1144, 1174, 1204, 1234, 2149, 2336
HapII	CCGG	4 cut(s)	242, 395, 633, 2080
HhaI	GCGC	4 cut(s)	817, 1695, 2886, 3049
Hin6I	GCGC	4 cut(s)	815, 1693, 2884, 3047
HinP1I	GCGC	4 cut(s)	815, 1693, 2884, 3047
HindIII	AAGCTT	2 cut(s)	1854, 2848
HpaII	CCGG	4 cut(s)	242, 395, 633, 2080
HphI	GGTGA	8 cut(s)	647, 793, 879, 923, 1741, 2909, 2918, 3183
Hpy166II	GTNNAC	4 cut(s)	197, 487, 1568, 2237
Hpy8I	GTNNAC	4 cut(s)	197, 487, 1568, 2237
Hpy99I	CGWCG	1 cut(s)	955
HpyCH4III	ACNGT	9 cut(s)	44, 187, 284, 1105, 1129, 1618, 2170, 2494, 3189
HpyCH4IV	ACGT	2 cut(s)	950, 1840
HpyF10VI	GCNNNNNNNGC	7 cut(s)	409, 1862, 1871, 2427, 2451, 2753, 3157
HpySE526I	ACGT	2 cut(s)	950, 1840
HspAI	GCGC	4 cut(s)	815, 1693, 2884, 3047
KflI	GGGWCCC	1 cut(s)	355
KpnI	GGTACC	1 cut(s)	2174
Ksp22I	TGATCA	1 cut(s)	928
Kzo9I	GATC	7 cut(s)	928, 1309, 1393, 1831, 1928, 1995, 2210
LguI	GCTCTTC	2 cut(s)	79, 2358
LmnI	GCTCC	5 cut(s)	835, 2264, 2450, 2753, 2881
Lsp1109I	GCAGC	4 cut(s)	1101, 2326, 2414, 3191
LweI	GCATC	3 cut(s)	774, 1795, 2059
MaeII	ACGT	2 cut(s)	950, 1840
MaeIII	GTNAC	9 cut(s)	181, 187, 578, 628, 863, 2400, 2502, 2960, 3189
MalI	GATC	7 cut(s)	930, 1311, 1395, 1833, 1930, 1997, 2212
MbiI	CCGCTC	1 cut(s)	2157
MboI	GATC	7 cut(s)	928, 1309, 1393, 1831, 1928, 1995, 2210
MfeI	CAATTG	3 cut(s)	501, 2553, 3161
MflI	RGATCY	2 cut(s)	1309, 1831
MhlI	GDGCHC	5 cut(s)	29, 199, 2370, 2447, 2758
MlsI	TGGCCA	3 cut(s)	656, 1144, 2336
MluNI	TGGCCA	3 cut(s)	656, 1144, 2336
MlyI	GAGTC	4 cut(s)	266, 271, 482, 1982
MmeI	TCCRAC	5 cut(s)	521, 743, 942, 2324, 2331
Mox20I	TGGCCA	3 cut(s)	656, 1144, 2336
Mph1103I	ATGCAT	1 cut(s)	1764
MroXI	GAANNNNTTC	1 cut(s)	3016
MscI	TGGCCA	3 cut(s)	656, 1144, 2336
MslI	CAYNNNNRTG	4 cut(s)	285, 1138, 2129, 2718
Msp20I	TGGCCA	3 cut(s)	656, 1144, 2336
MspA1I	CMGCKG	1 cut(s)	937
MspI	CCGG	4 cut(s)	242, 395, 633, 2080
MspR9I	CCNGG	6 cut(s)	375, 617, 1259, 1448, 2631, 2808
MunI	CAATTG	3 cut(s)	501, 2553, 3161
Mva1269I	GAATGC	1 cut(s)	276
MvaI	CCWGG	6 cut(s)	375, 617, 1259, 1448, 2631, 2808
MwoI	GCNNNNNNNGC	7 cut(s)	409, 1862, 1871, 2427, 2451, 2753, 3157
NcoI	CCATGG	1 cut(s)	3215
NdeI	CATATG	1 cut(s)	3091
NdeII	GATC	7 cut(s)	928, 1309, 1393, 1831, 1928, 1995, 2210
NheI	GCTAGC	3 cut(s)	767, 1874, 2417
NmeAIII	GCCGAG	2 cut(s)	162, 2776
NmuCI	GTSAC	3 cut(s)	578, 2502, 3189
NsiI	ATGCAT	1 cut(s)	1764
OliI	CACNNNNGTG	1 cut(s)	2718
PagI	TCATGA	1 cut(s)	2047
PciSI	GCTCTTC	2 cut(s)	79, 2358
PctI	GAATGC	1 cut(s)	276
PdmI	GAANNNNTTC	1 cut(s)	3016
PflMI	CCANNNNNTGG	3 cut(s)	503, 2036, 2343
PinAI	ACCGGT	1 cut(s)	632
PkrI	GCNGC	6 cut(s)	411, 1091, 2316, 2429, 3153, 3206
PleI	GAGTC	4 cut(s)	265, 271, 482, 1981
PpsI	GAGTC	4 cut(s)	265, 271, 482, 1981
PpuMI	RGGWCCY	2 cut(s)	355, 642
Psp124BI	GAGCTC	1 cut(s)	2370
Psp1406I	AACGTT	1 cut(s)	1840
Psp5II	RGGWCCY	2 cut(s)	355, 642
Psp6I	CCWGG	6 cut(s)	373, 615, 1257, 1446, 2629, 2806
PspFI	CCCAGC	2 cut(s)	2430, 2440
PspGI	CCWGG	6 cut(s)	373, 615, 1257, 1446, 2629, 2806
PspPI	GGNCC	6 cut(s)	131, 355, 402, 642, 2627, 2841
PspPPI	RGGWCCY	2 cut(s)	355, 642
PstI	CTGCAG	1 cut(s)	2951
PsuI	RGATCY	2 cut(s)	1309, 1831
RsaI	GTAC	6 cut(s)	167, 910, 1102, 1924, 2172, 2900
RsaNI	GTAC	6 cut(s)	166, 909, 1101, 1923, 2171, 2899
RseI	CAYNNNNRTG	4 cut(s)	285, 1138, 2129, 2718
SacI	GAGCTC	1 cut(s)	2370
SapI	GCTCTTC	2 cut(s)	79, 2358
SatI	GCNGC	6 cut(s)	410, 1090, 2315, 2428, 3152, 3205
Sau3AI	GATC	7 cut(s)	928, 1309, 1393, 1831, 1928, 1995, 2210
Sau96I	GGNCC	6 cut(s)	131, 355, 402, 642, 2627, 2841
ScaI	AGTACT	3 cut(s)	910, 1102, 1924
SchI	GAGTC	4 cut(s)	266, 271, 482, 1982
ScrFI	CCNGG	6 cut(s)	375, 617, 1259, 1448, 2631, 2808
SduI	GDGCHC	5 cut(s)	29, 199, 2370, 2447, 2758
SfaNI	GCATC	3 cut(s)	774, 1795, 2059
SfcI	CTRYAG	5 cut(s)	40, 1062, 1473, 2947, 3185
SinI	GGWCC	4 cut(s)	355, 642, 2627, 2841
SmiMI	CAYNNNNRTG	4 cut(s)	285, 1138, 2129, 2718
SmlI	CTYRAG	1 cut(s)	2010
SmoI	CTYRAG	1 cut(s)	2010
SpeI	ACTAGT	1 cut(s)	722
SstI	GAGCTC	1 cut(s)	2370
StyD4I	CCNGG	6 cut(s)	373, 615, 1257, 1446, 2629, 2806
StyI	CCWWGG	2 cut(s)	1561, 3215
TaaI	ACNGT	9 cut(s)	44, 187, 284, 1105, 1129, 1618, 2170, 2494, 3189
TaiI	ACGT	2 cut(s)	953, 1843
TaqI	TCGA	6 cut(s)	149, 521, 1036, 1452, 2612, 3001
TaqII	GACCGA	1 cut(s)	576
TatI	WGTACW	3 cut(s)	908, 1100, 1922
TauI	GCSGC	2 cut(s)	412, 3154
TscAI	CASTG	8 cut(s)	199, 289, 330, 447, 1132, 2090, 2124, 2779
TseFI	GTSAC	3 cut(s)	578, 2502, 3189
TseI	GCWGC	4 cut(s)	1089, 2314, 2427, 3204
Tsp45I	GTSAC	3 cut(s)	578, 2502, 3189
TspGWI	ACGGA	2 cut(s)	1454, 1717
TspRI	CASTG	8 cut(s)	199, 289, 330, 447, 1132, 2090, 2124, 2779
Van91I	CCANNNNNTGG	3 cut(s)	503, 2036, 2343
VneI	GTGCAC	1 cut(s)	195
VpaK11BI	GGWCC	4 cut(s)	355, 642, 2627, 2841
XapI	RAATTY	5 cut(s)	52, 1777, 2525, 2706, 2741
XbaI	TCTAGA	1 cut(s)	533
XcmI	CCANNNNNNNNNTGG	2 cut(s)	122, 2347
XmnI	GAANNNNTTC	1 cut(s)	3016
ZrmI	AGTACT	3 cut(s)	910, 1102, 1924
Zsp2I	ATGCAT	1 cut(s)	1764

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.