Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0010483

Physical Location & Seq

Genomic Coordinates Reverse (-)

60821628 .. 60825937

Gene Structure 4310 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG425500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2268 bp

ATGGAGAGGTTTTCACAAAGAGAGAGCATTCTTTTAGGCTACAGTCCTCAAAATTCCTTCGTCAACTCTGGTTCTTCGCCCCGCAGTCCCTACAAGAACTCAGATGTTGATTTCCATGATGTGTTTGGTGGCCCTCCGAGGCGATCATCGATTCAAGATATGAGGTACAGCTTCAACGATGTTACAGTGACCAGTGCACCCAAAGGGGATGATGATGATGATGAGGAAGGTTTGTCTGAGAAGCCGGTGTTTGGGGGAGAGTCCCACAACAGAAGGCGGACTCACAGTGATGACTTCTTTGATGACATATTTAAAGCCAGCAATTCAGTGAGTTCTAGTCCGAGGAGGCTTCAACGGGACCCTTATTCTTCTTCTCCAGGTTCTCGGGTTCTAAGTCCGGCACGGCCCCTGCCGCCTAAACCGGAATCTTCTCTGGGTTCCTCACTGCCACCACAATTCAGCCTGCCTGCCAAATTGACCAAAGGGGTGGACTCTCCTCCAACAATTGGTGCCATTACTCGCACGACTTCTCTTTCTAGATTTTCAAGCCAAGCATTTCAAAGTTCTGAAAACTTGAAAAGTGACATTCGGTCATCACTTCGCATGAGCCATTTTTCCCAGGACTTTTCTGTTACCGGTGAAGGGTCCTCAAACTTGGCCAAGACTGACAAAGATGATACAGGAGGCAATTTGGAACAGGATTCTAAGAGTTCCCAAAGTCCAACTAGTAGCAATCTGTTTCAGTTTCATTTCTCAATATACAAGTGGGCTAGCAAGCCAATGGTGATGCCTTTTAGGGGAAGGAGTGGTTCAAGAGCGCAAGCGACTAAAAATGAGGAGCAATCAAGCACTTGTGAATACGCTGGTAACAAGAGTATTGGAAGGAAATCACCTATATCCACTCTGCCTAGTACTGATTTTACCTCCAATGATCACCCGCTGACAGATTCTACGTCGTCCAAGTTGGAAAGCAACAAACAAGAAAATGATTTGCTTCTTGATGAAAGCATTACCAACAAAGTAGAAGAACAGCCAAATCGATTCATTGAAGAGACAATTCTTCCTGTAGTTGAATCTTCAGAAACTTTCCGCAGCCTTTGTAGTACTGTTGAAGATGAAGCTGGTGGCACTGTTTCATGCCAATGGCCAAAAAAAGACACCGATTCATGCCAGACTTGTGAAGATATAGAGCCTCGTCCTTTGCTTCAAACAGCTTGTGAAGATCCACAAGAAAAAGTTCATGTGCTTATGGAACAACTGCACAAGCCTGAGATAAAACCTACTCATTCTCTGTTTTTTGATAATGATCTTGGAGAAGGAACTAAGGAGATAACTAAATTGGCTGGTAAAAAGGAAAGCCTGGTCGAAGCCACCAAAAAATCATCTGTAGATGTTGGTTCTAGTAGAAATGTGAAAAATCAGAATGGAAAAAGAAGTTCCCTGACTAATGTTCAAGTTGATAAAGCTGGTGTCCAAGGTTCACTTCGGAACTTGGGAGACCATCTTGGGAGAAACAAAGTCAAGGGAACGGTTAAGGATTTTGTTAAAATGTTCAACCAAGAAGCATTGTCAAAACCCAAAGATGATGATGACTTTGGAAGTCGGCGCTTTAAACGGAAGGAGAAAAATCCTATTGAATCGGTGAATGAAGCAAGTATAAGCACAACTATAATGCATGAGGAATTACAAAATTCCAATGTGAAGAAAACATTTCCAGATGCTTCTTCCATCAAGATAAAAGAAGTTCTCAAACGTTCAGAGAAAGAAGCTTTTGAAGCAAAGACTGCTAGCTTTATCCTTAATAATGTTCCTAAGCAGTATGCCTCAGCTTCAAGTACTGGATCAGTTGCCAACTGCTCTAAGGCAAATACTGGAGATTTAGATGAGTCCTTCCATGAAAACTTCCAGATCAAAGAATTAACTCAAGATGAGAAGAAACCGCCAGTAGTTGGCAATAATCATGAGGAGTTGCAGGTTATTGATGCTAAAATCCGGCAGTGGTCAAAGGGAAAGGAAGGAAACGTACGCTCACTGCTCACTACTATGCAACATATTGTTTGGCCTGAGAGCGGGTGGAAGACTGTACCTCTAGTTGATATAATTGAAGGTAATGCTGTGAAAAGATCATATCAAAGGGCTTTACTCTGTTTACACCCTGATAAACTACAACAGAAAGGAGCTACTTCACAACAGAAATACATTGCAGAAAAAGTCTTTGATATCTTGCAGGAGGCATGGAATCACTTCAACTCGCTTGGTCCACTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006897 GO:0006898 GO:0006996 GO:0007010 GO:0007015 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009637 GO:0009657 GO:0009658 GO:0009902 GO:0009903 GO:0009904 GO:0009987 GO:0016043 GO:0016192 GO:0019750 GO:0030029 GO:0030036 GO:0031982 GO:0043226 GO:0043227 GO:0044424 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0051644 GO:0051649 GO:0051656 GO:0051667 GO:0051716 GO:0071214 GO:0071478 GO:0071482 GO:0071483 GO:0071840 GO:0097435 GO:0098657 GO:0104004

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

755

Amino Acids

83.8

Weight (kDa)

6.4

Isoelectric Point (pI)

59.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010483)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G75100
fragaria_vesca	FvH4_2g40090
malus_domestica	MD08G1032500.v1.1 MD15G1029200.v1.1
prunus_persica	Prupe.1G382200_v2.0.a1 Prupe.1G382200_v2.0.a1
pyrus_communis	pycom08g02580 pycom15g02590
rosa_chinensis	RchiOBHm_Chr6g0300651
rosa_laevigata	RLG00000011314
rosa_multiflora	Rmu_co8005646.1_g000001 Rmu_sc0004226.1_g000015 Rmu_sc0014374.1_g000001
rosa_roxburghii	Rroxscaffold_7G00167530
rosa_rugosa	Rorug06G0298200
rosa_samantha	Rh6AG410800 Rh6BG418000 Rh6CG425500 Rh6DG410900
rosa_wichuraiana	Rw0G002200 Rw6G035940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1963
AccB1I	GGYRCC	1 cut(s)	509
AccB7I	CCANNNNNTGG	2 cut(s)	506, 1949
AccBSI	CCGCTC	1 cut(s)	2070
AciI	CCGC	7 cut(s)	82, 277, 413, 938, 1090, 1940, 2070
AclI	AACGTT	1 cut(s)	1753
AclWI	GGATC	2 cut(s)	1217, 1849
AcoI	YGGCCR	2 cut(s)	657, 1145
AcsI	RAATTY	2 cut(s)	52, 1690
AcuI	CTGAAG	1 cut(s)	1062
AfaI	GTAC	6 cut(s)	167, 913, 1105, 1837, 2025, 2085
AfiI	CCNNNNNNNGG	6 cut(s)	251, 506, 642, 797, 1949, 2069
AgeI	ACCGGT	1 cut(s)	635
AhdI	GACNNNNNGTC	1 cut(s)	589
AhlI	ACTAGT	1 cut(s)	725
AjnI	CCWGG	3 cut(s)	376, 618, 1359
AjuI	GAANNNNNNNTTGG	2 cut(s)	1467, 1499
AluBI	AGCT	8 cut(s)	171, 1121, 1214, 1466, 1769, 1791, 1829, 2180
AluI	AGCT	8 cut(s)	171, 1121, 1214, 1466, 1769, 1791, 1829, 2180
Alw21I	GWGCWC	1 cut(s)	199
Alw26I	GTCTC	2 cut(s)	1046, 1491
Alw44I	GTGCAC	1 cut(s)	195
AlwI	GGATC	2 cut(s)	1217, 1849
Ama87I	CYCGRG	1 cut(s)	384
AoxI	GGCC	5 cut(s)	130, 404, 657, 1145, 2060
ApaLI	GTGCAC	1 cut(s)	195
ApeKI	GCWGC	1 cut(s)	1092
ApoI	RAATTY	2 cut(s)	52, 1690
AsiGI	ACCGGT	1 cut(s)	635
Asp700I	GAANNNNTTC	2 cut(s)	1236, 2243
AspLEI	GCGC	2 cut(s)	820, 1608
AspS9I	GGNCC	5 cut(s)	131, 358, 405, 645, 2258
AsuHPI	GGTGA	5 cut(s)	650, 796, 882, 926, 1654
AsuNHI	GCTAGC	2 cut(s)	770, 1787
AvaI	CYCGRG	1 cut(s)	384
AvaII	GGWCC	3 cut(s)	358, 645, 2258
BaeGI	GKGCMC	1 cut(s)	199
BalI	TGGCCA	2 cut(s)	659, 1147
BanI	GGYRCC	1 cut(s)	509
BarI	GAAGNNNNNNTAC	2 cut(s)	2007, 2039
BbsI	GAAGAC	1 cut(s)	2084
Bbv12I	GWGCWC	1 cut(s)	199
BbvCI	CCTCAGC	1 cut(s)	1825
BbvI	GCAGC	1 cut(s)	1104
BccI	CCATC	2 cut(s)	1509, 1736
BceAI	ACGGC	1 cut(s)	419
BciT130I	CCWGG	3 cut(s)	378, 620, 1361
BclI	TGATCA	1 cut(s)	931
BcoDI	GTCTC	2 cut(s)	1046, 1491
BcuI	ACTAGT	1 cut(s)	725
BfaI	CTAG	8 cut(s)	336, 537, 726, 771, 909, 1401, 1788, 2090
BfmI	CTRYAG	3 cut(s)	40, 1065, 1386
BfoI	RGCGCY	1 cut(s)	1609
BfuAI	ACCTGC	1 cut(s)	1963
BisI	GCNGC	2 cut(s)	413, 1093
BlsI	GCNGC	2 cut(s)	414, 1094
BmcAI	AGTACT	3 cut(s)	913, 1105, 1837
Bme1390I	CCNGG	3 cut(s)	378, 620, 1361
Bme18I	GGWCC	3 cut(s)	358, 645, 2258
BmeRI	GACNNNNNGTC	1 cut(s)	589
BmeT110I	CYCGRG	1 cut(s)	384
BmgT120I	GGNCC	5 cut(s)	131, 358, 405, 645, 2258
BmiI	GGNNCC	6 cut(s)	359, 360, 407, 439, 511, 646
BmrFI	CCNGG	3 cut(s)	378, 620, 1361
BmsI	GCATC	3 cut(s)	777, 1708, 1972
BmtI	GCTAGC	2 cut(s)	774, 1791
BpiI	GAAGAC	1 cut(s)	2084
BpmI	CTGGAG	2 cut(s)	360, 1893
Bpu10I	CCTNAGC	2 cut(s)	1812, 1825
BpuEI	CTTGAG	1 cut(s)	1908
Bsa29I	ATCGAT	2 cut(s)	149, 1039
BsaBI	GATNNNNATC	1 cut(s)	1305
BsaI	GGTCTC	1 cut(s)	1491
BsaJI	CCNNGG	4 cut(s)	137, 341, 618, 1474
BsaWI	WCCGGW	2 cut(s)	421, 635
Bsc4I	CCNNNNNNNGG	6 cut(s)	251, 506, 642, 797, 1949, 2069
Bse118I	RCCGGY	2 cut(s)	244, 635
Bse1I	ACTGG	4 cut(s)	192, 1843, 1876, 1943
Bse3DI	GCAATG	1 cut(s)	2199
Bse8I	GATNNNNATC	1 cut(s)	1305
BseBI	CCWGG	3 cut(s)	378, 620, 1361
BseCI	ATCGAT	2 cut(s)	149, 1039
BseDI	CCNNGG	4 cut(s)	137, 341, 618, 1474
BseGI	GGATG	1 cut(s)	214
BseJI	GATNNNNATC	1 cut(s)	1305
BseLI	CCNNNNNNNGG	6 cut(s)	251, 506, 642, 797, 1949, 2069
BseMI	GCAATG	1 cut(s)	2199
BseMII	CTCAG	5 cut(s)	114, 228, 1260, 1839, 2055
BseNI	ACTGG	4 cut(s)	192, 1843, 1876, 1943
BseRI	GAGGAG	4 cut(s)	358, 486, 851, 1979
BseSI	GKGCMC	1 cut(s)	199
BseXI	GCAGC	1 cut(s)	1104
BsgI	GTGCAG	1 cut(s)	1244
BshFI	GGCC	5 cut(s)	132, 406, 659, 1147, 2062
BshNI	GGYRCC	1 cut(s)	509
BshTI	ACCGGT	1 cut(s)	635
BshVI	ATCGAT	2 cut(s)	149, 1039
BsiHKAI	GWGCWC	1 cut(s)	199
BsiHKCI	CYCGRG	1 cut(s)	384
BsiSI	CCGG	5 cut(s)	245, 398, 422, 636, 1993
BsiWI	CGTACG	1 cut(s)	2023
BslFI	GGGAC	3 cut(s)	72, 247, 371
BslI	CCNNNNNNNGG	6 cut(s)	251, 506, 642, 797, 1949, 2069
BsmAI	GTCTC	2 cut(s)	1046, 1491
BsmFI	GGGAC	3 cut(s)	72, 247, 371
BsmI	GAATGC	1 cut(s)	27
BsnI	GGCC	5 cut(s)	132, 406, 659, 1147, 2062
Bso31I	GGTCTC	1 cut(s)	1491
BsoBI	CYCGRG	1 cut(s)	384
Bsp1286I	GDGCHC	1 cut(s)	199
Bsp143I	GATC	7 cut(s)	143, 931, 1222, 1306, 1841, 1908, 2123
BspACI	CCGC	7 cut(s)	82, 277, 413, 938, 1090, 1940, 2070
BspANI	GGCC	5 cut(s)	132, 406, 659, 1147, 2062
BspCNI	CTCAG	5 cut(s)	113, 229, 1261, 1838, 2056
BspDI	ATCGAT	2 cut(s)	149, 1039
BspHI	TCATGA	1 cut(s)	1960
BspLI	GGNNCC	6 cut(s)	359, 360, 407, 439, 511, 646
BspMI	ACCTGC	1 cut(s)	1963
BspOI	GCTAGC	2 cut(s)	774, 1791
BspPI	GGATC	2 cut(s)	1217, 1849
BspT107I	GGYRCC	1 cut(s)	509
BspTNI	GGTCTC	1 cut(s)	1491
BsrBI	CCGCTC	1 cut(s)	2070
BsrDI	GCAATG	1 cut(s)	2199
BsrFI	RCCGGY	2 cut(s)	244, 635
BsrI	ACTGG	4 cut(s)	192, 1843, 1876, 1943
BssAI	RCCGGY	2 cut(s)	244, 635
BssECI	CCNNGG	4 cut(s)	137, 341, 618, 1474
BssMI	GATC	7 cut(s)	143, 931, 1222, 1306, 1841, 1908, 2123
BssT1I	CCWWGG	1 cut(s)	1474
Bst2UI	CCWGG	3 cut(s)	378, 620, 1361
Bst4CI	ACNGT	7 cut(s)	44, 187, 287, 1108, 1132, 1531, 2083
Bst6I	CTCTTC	1 cut(s)	1044
BstAPI	GCANNNNNTGC	1 cut(s)	1784
BstC8I	GCNNGC	7 cut(s)	319, 464, 468, 772, 776, 822, 1789
BstF5I	GGATG	1 cut(s)	214
BstH2I	RGCGCY	1 cut(s)	1609
BstHHI	GCGC	2 cut(s)	820, 1608
BstKTI	GATC	7 cut(s)	146, 934, 1225, 1309, 1844, 1911, 2126
BstMAI	GTCTC	2 cut(s)	1046, 1491
BstMBI	GATC	7 cut(s)	143, 931, 1222, 1306, 1841, 1908, 2123
BstMWI	GCNNNNNNNGC	3 cut(s)	412, 1775, 1784
BstNI	CCWGG	3 cut(s)	378, 620, 1361
BstSCI	CCNGG	3 cut(s)	376, 618, 1359
BstSFI	CTRYAG	3 cut(s)	40, 1065, 1386
BstSLI	GKGCMC	1 cut(s)	199
BstV1I	GCAGC	1 cut(s)	1104
BstV2I	GAAGAC	1 cut(s)	2084
BstX2I	RGATCY	1 cut(s)	1222
BstXI	CCANNNNNNTGG	1 cut(s)	487
BstYI	RGATCY	1 cut(s)	1222
Bsu15I	ATCGAT	2 cut(s)	149, 1039
BsuRI	GGCC	5 cut(s)	132, 406, 659, 1147, 2062
BsuTUI	ATCGAT	2 cut(s)	149, 1039
BtsCI	GGATG	1 cut(s)	214
BtsI	GCAGTG	3 cut(s)	443, 2003, 2030
BtsIMutI	CAGTG	8 cut(s)	192, 199, 292, 333, 443, 1128, 2003, 2030
BveI	ACCTGC	1 cut(s)	1963
Cac8I	GCNNGC	7 cut(s)	319, 464, 468, 772, 776, 822, 1789
CciI	TCATGA	1 cut(s)	1960
CfoI	GCGC	2 cut(s)	820, 1608
Cfr10I	RCCGGY	2 cut(s)	244, 635
Cfr13I	GGNCC	5 cut(s)	131, 358, 405, 645, 2258
ClaI	ATCGAT	2 cut(s)	149, 1039
Csp6I	GTAC	6 cut(s)	166, 912, 1104, 1836, 2024, 2084
CspAI	ACCGGT	1 cut(s)	635
CviAII	CATG	9 cut(s)	116, 604, 1137, 1167, 1241, 1676, 1895, 1961, 2235
CviQI	GTAC	6 cut(s)	166, 912, 1104, 1836, 2024, 2084
DpnI	GATC	7 cut(s)	145, 933, 1224, 1308, 1843, 1910, 2125
DpnII	GATC	7 cut(s)	143, 931, 1222, 1306, 1841, 1908, 2123
DraI	TTTAAA	2 cut(s)	313, 1612
DriI	GACNNNNNGTC	1 cut(s)	589
EaeI	YGGCCR	2 cut(s)	657, 1145
Eam1104I	CTCTTC	1 cut(s)	1044
Eam1105I	GACNNNNNGTC	1 cut(s)	589
EarI	CTCTTC	1 cut(s)	1044
EciI	GGCGGA	1 cut(s)	292
Eco130I	CCWWGG	1 cut(s)	1474
Eco31I	GGTCTC	1 cut(s)	1491
Eco32I	GATATC	1 cut(s)	2221
Eco47I	GGWCC	3 cut(s)	358, 645, 2258
Eco57I	CTGAAG	1 cut(s)	1062
Eco88I	CYCGRG	1 cut(s)	384
EcoO109I	RGGNCCY	2 cut(s)	358, 645
EcoRII	CCWGG	3 cut(s)	376, 618, 1359
EcoRV	GATATC	1 cut(s)	2221
EcoT14I	CCWWGG	1 cut(s)	1474
EcoT22I	ATGCAT	1 cut(s)	1677
ErhI	CCWWGG	1 cut(s)	1474
FaeI	CATG	9 cut(s)	119, 607, 1140, 1170, 1244, 1679, 1898, 1964, 2238
FalI	AAGNNNNNCTT	2 cut(s)	1467, 1499
FaqI	GGGAC	3 cut(s)	72, 247, 371
FatI	CATG	9 cut(s)	115, 603, 1136, 1166, 1240, 1675, 1894, 1960, 2234
FauI	CCCGC	3 cut(s)	89, 945, 2063
FbaI	TGATCA	1 cut(s)	931
Fnu4HI	GCNGC	2 cut(s)	413, 1093
FokI	GGATG	1 cut(s)	221
Fsp4HI	GCNGC	2 cut(s)	413, 1093
FspBI	CTAG	8 cut(s)	336, 537, 726, 771, 909, 1401, 1788, 2090
GlaI	GCGC	2 cut(s)	819, 1607
GluI	GCNGC	2 cut(s)	413, 1093
GsuI	CTGGAG	2 cut(s)	360, 1893
HaeII	RGCGCY	1 cut(s)	1609
HaeIII	GGCC	5 cut(s)	132, 406, 659, 1147, 2062
HapII	CCGG	5 cut(s)	245, 398, 422, 636, 1993
HhaI	GCGC	2 cut(s)	820, 1608
Hin1II	CATG	9 cut(s)	119, 607, 1140, 1170, 1244, 1679, 1898, 1964, 2238
Hin6I	GCGC	2 cut(s)	818, 1606
HinP1I	GCGC	2 cut(s)	818, 1606
HincII	GTYRAC	1 cut(s)	64
HindII	GTYRAC	1 cut(s)	64
HindIII	AAGCTT	1 cut(s)	1767
HpaII	CCGG	5 cut(s)	245, 398, 422, 636, 1993
HphI	GGTGA	5 cut(s)	650, 796, 882, 926, 1654
Hpy166II	GTNNAC	6 cut(s)	64, 197, 490, 1481, 2150, 2261
Hpy188I	TCNGA	9 cut(s)	103, 138, 238, 342, 568, 1081, 1422, 1488, 1759
Hpy188III	TCNNGA	9 cut(s)	155, 537, 813, 998, 1715, 1732, 1906, 1925, 1961
Hpy8I	GTNNAC	6 cut(s)	64, 197, 490, 1481, 2150, 2261
Hpy99I	CGWCG	1 cut(s)	958
HpyCH4III	ACNGT	7 cut(s)	44, 187, 287, 1108, 1132, 1531, 2083
HpyCH4IV	ACGT	3 cut(s)	953, 1753, 2022
HpyCH4V	TGCA	7 cut(s)	197, 1261, 1675, 1972, 2047, 2204, 2227
HpyF10VI	GCNNNNNNNGC	3 cut(s)	412, 1775, 1784
HpySE526I	ACGT	3 cut(s)	953, 1753, 2022
Hsp92II	CATG	9 cut(s)	119, 607, 1140, 1170, 1244, 1679, 1898, 1964, 2238
HspAI	GCGC	2 cut(s)	818, 1606
KflI	GGGWCCC	1 cut(s)	358
Ksp22I	TGATCA	1 cut(s)	931
Kzo9I	GATC	7 cut(s)	143, 931, 1222, 1306, 1841, 1908, 2123
LmnI	GCTCC	2 cut(s)	838, 2177
Lsp1109I	GCAGC	1 cut(s)	1104
LweI	GCATC	3 cut(s)	777, 1708, 1972
MaeI	CTAG	8 cut(s)	336, 537, 726, 771, 909, 1401, 1788, 2090
MaeII	ACGT	3 cut(s)	953, 1753, 2022
MaeIII	GTNAC	5 cut(s)	181, 187, 581, 631, 866
MalI	GATC	7 cut(s)	145, 933, 1224, 1308, 1843, 1910, 2125
MbiI	CCGCTC	1 cut(s)	2070
MboI	GATC	7 cut(s)	143, 931, 1222, 1306, 1841, 1908, 2123
MfeI	CAATTG	1 cut(s)	504
MflI	RGATCY	1 cut(s)	1222
MhlI	GDGCHC	1 cut(s)	199
MlsI	TGGCCA	2 cut(s)	659, 1147
MluNI	TGGCCA	2 cut(s)	659, 1147
MlyI	GAGTC	4 cut(s)	269, 274, 485, 1895
MmeI	TCCRAC	3 cut(s)	524, 746, 945
Mox20I	TGGCCA	2 cut(s)	659, 1147
Mph1103I	ATGCAT	1 cut(s)	1677
MroXI	GAANNNNTTC	2 cut(s)	1236, 2243
MscI	TGGCCA	2 cut(s)	659, 1147
MseI	TTAA	6 cut(s)	312, 1533, 1545, 1611, 1800, 1919
MslI	CAYNNNNRTG	3 cut(s)	288, 1141, 2042
Msp20I	TGGCCA	2 cut(s)	659, 1147
MspA1I	CMGCKG	1 cut(s)	940
MspI	CCGG	5 cut(s)	245, 398, 422, 636, 1993
MspR9I	CCNGG	3 cut(s)	378, 620, 1361
MunI	CAATTG	1 cut(s)	504
Mva1269I	GAATGC	1 cut(s)	27
MvaI	CCWGG	3 cut(s)	378, 620, 1361
MwoI	GCNNNNNNNGC	3 cut(s)	412, 1775, 1784
NdeII	GATC	7 cut(s)	143, 931, 1222, 1306, 1841, 1908, 2123
NheI	GCTAGC	2 cut(s)	770, 1787
NlaIII	CATG	9 cut(s)	119, 607, 1140, 1170, 1244, 1679, 1898, 1964, 2238
NlaIV	GGNNCC	6 cut(s)	359, 360, 407, 439, 511, 646
NmuCI	GTSAC	2 cut(s)	187, 581
NsiI	ATGCAT	1 cut(s)	1677
PagI	TCATGA	1 cut(s)	1960
PctI	GAATGC	1 cut(s)	27
PdmI	GAANNNNTTC	2 cut(s)	1236, 2243
PfeI	GAWTC	9 cut(s)	151, 425, 701, 947, 1041, 1073, 1163, 1637, 2239
Pfl23II	CGTACG	1 cut(s)	2023
PflMI	CCANNNNNTGG	2 cut(s)	506, 1949
PinAI	ACCGGT	1 cut(s)	635
PkrI	GCNGC	2 cut(s)	414, 1094
PleI	GAGTC	4 cut(s)	268, 274, 485, 1894
PpsI	GAGTC	4 cut(s)	268, 274, 485, 1894
PpuMI	RGGWCCY	2 cut(s)	358, 645
Psp1406I	AACGTT	1 cut(s)	1753
Psp5II	RGGWCCY	2 cut(s)	358, 645
Psp6I	CCWGG	3 cut(s)	376, 618, 1359
PspGI	CCWGG	3 cut(s)	376, 618, 1359
PspLI	CGTACG	1 cut(s)	2023
PspN4I	GGNNCC	6 cut(s)	359, 360, 407, 439, 511, 646
PspPI	GGNCC	5 cut(s)	131, 358, 405, 645, 2258
PspPPI	RGGWCCY	2 cut(s)	358, 645
PsuI	RGATCY	1 cut(s)	1222
RsaI	GTAC	6 cut(s)	167, 913, 1105, 1837, 2025, 2085
RsaNI	GTAC	6 cut(s)	166, 912, 1104, 1836, 2024, 2084
RseI	CAYNNNNRTG	3 cut(s)	288, 1141, 2042
SaqAI	TTAA	6 cut(s)	312, 1533, 1545, 1611, 1800, 1919
SatI	GCNGC	2 cut(s)	413, 1093
Sau3AI	GATC	7 cut(s)	143, 931, 1222, 1306, 1841, 1908, 2123
Sau96I	GGNCC	5 cut(s)	131, 358, 405, 645, 2258
ScaI	AGTACT	3 cut(s)	913, 1105, 1837
SchI	GAGTC	4 cut(s)	269, 274, 485, 1895
ScrFI	CCNGG	3 cut(s)	378, 620, 1361
SduI	GDGCHC	1 cut(s)	199
SfaNI	GCATC	3 cut(s)	777, 1708, 1972
SfcI	CTRYAG	3 cut(s)	40, 1065, 1386
SinI	GGWCC	3 cut(s)	358, 645, 2258
SmiMI	CAYNNNNRTG	3 cut(s)	288, 1141, 2042
SmlI	CTYRAG	1 cut(s)	1923
SmoI	CTYRAG	1 cut(s)	1923
SpeI	ACTAGT	1 cut(s)	725
SsiI	CCGC	7 cut(s)	82, 277, 413, 938, 1090, 1940, 2070
SspMI	CTAG	8 cut(s)	336, 537, 726, 771, 909, 1401, 1788, 2090
StyD4I	CCNGG	3 cut(s)	376, 618, 1359
StyI	CCWWGG	1 cut(s)	1474
TaaI	ACNGT	7 cut(s)	44, 187, 287, 1108, 1132, 1531, 2083
TaiI	ACGT	3 cut(s)	956, 1756, 2025
TaqI	TCGA	3 cut(s)	149, 1039, 1365
TaqII	GACCGA	1 cut(s)	579
TatI	WGTACW	3 cut(s)	911, 1103, 1835
TauI	GCSGC	1 cut(s)	415
TfiI	GAWTC	9 cut(s)	151, 425, 701, 947, 1041, 1073, 1163, 1637, 2239
Tru1I	TTAA	6 cut(s)	312, 1533, 1545, 1611, 1800, 1919
Tru9I	TTAA	6 cut(s)	312, 1533, 1545, 1611, 1800, 1919
TscAI	CASTG	8 cut(s)	192, 199, 292, 333, 450, 1135, 2003, 2037
TseFI	GTSAC	2 cut(s)	187, 581
TseI	GCWGC	1 cut(s)	1092
Tsp45I	GTSAC	2 cut(s)	187, 581
TspDTI	ATGAA	9 cut(s)	737, 1017, 1033, 1125, 1131, 1155, 1229, 1662, 1911
TspGWI	ACGGA	1 cut(s)	1630
TspRI	CASTG	8 cut(s)	192, 199, 292, 333, 450, 1135, 2003, 2037
Van91I	CCANNNNNTGG	2 cut(s)	506, 1949
VneI	GTGCAC	1 cut(s)	195
VpaK11BI	GGWCC	3 cut(s)	358, 645, 2258
XapI	RAATTY	2 cut(s)	52, 1690
XbaI	TCTAGA	1 cut(s)	536
XcmI	CCANNNNNNNNNTGG	1 cut(s)	122
XmnI	GAANNNNTTC	2 cut(s)	1236, 2243
XspI	CTAG	8 cut(s)	336, 537, 726, 771, 909, 1401, 1788, 2090
ZrmI	AGTACT	3 cut(s)	913, 1105, 1837
Zsp2I	ATGCAT	1 cut(s)	1677

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.