Rorug06G0298200

J domain-containing protein required for chloroplast accumulation response

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0002011
Physical Location & Seq
Reverse (-)
45087965 .. 45091278
3314 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0298200.1

Sequence Viewer

Length: 1050 bp
ATGGCTCCACAAAGACAATTATTCTCGTTCTGTATTTTTAGTGTCCTCTCCTTTAGTACTATAACTTCAGGCTATGGTGGTACTTTGCCAGATAACAAACCAAGCACTCAGCGCTTCGCTCCTACGTACTCATATAAATTGGGTAAATCGGTTCCCCAGGAGGCCGGTCCTGAAAGGTTCTCCCTTCAAACATTGGGTAGCACACTGCAATCAAAGCGGATGGTGACTAATCCTTTTCATCCCATTCACAATGTGAGTGGCGCACGACCATCAACTCCGGCTCCGATTAGCGTTGATAAGTTTGGAGCTAAAGGGATTGATCATACAGATGACACAGAGGCATTTCAGAAGGCGTGGCTGGAAGCTTGTTCCTCCAACGGAGCGGTGGTTCTTCTGGTGCCGCCCCACAGGAGCTATTTCGTTAAGCAATTCACATTCTCAGGCGCGCAATGCAAATCCCATATTACAATGCAGATCCAAGGAACGATAATGGCATTTGAGGATCCGAAAACCTACCATTTTCCAAATAAAAGTAAGCAGCAGTACTGGCTTACCTTTGAGAGGGTTCAGAACTTGGTGGTTGAAGGTCCTGGAACCATCAATGGCAACGGAGAAAAATGGTGGCAAAGCTCATGCAAACAAAACAATATAACTCGCACGCTGGTGCCCAATTGCAATAACGACGCACCAACTGCTGTAACCTTCAAGAAGTGCAATAACTTGACGGTGCATAATCTGAATTTTGAAAAGGCACAGCAGAAGCATGTTTCGTTTGAAAATTGCACGGATGTTAAAGCTTCCCGTCTTAGAATAAATACATCAGAGGCTAGTCCCAACACTGATGGAATTCACGTTACAGAAACCAAGAACATCGACATTTCAATGAGTCGTATAAGCACAGGTGATGATTGTATATCCATTATGGGAGGATCCCAGAATGTTTACGTCGCAAACATAGCTTGCGGACCAGGCCATGGAATCAGTTTTGTTCGCAGTTTTCCCCGAATTTCTCACCACAAAGGAAGTATCAAGGGTACTAATCCCGGTTAA

Protein Analysis

349

Amino Acids

38.38

Weight (kDa)

9.24

Isoelectric Point (pI)

43.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_28 PF00295 123 - 328 7.1e-52 Glycosyl hydrolases family 28
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 397, 664
AccB7I CCANNNNNTGG 1 cut(s) 974
AccBSI CCGCTC 1 cut(s) 383
AccII CGCG 1 cut(s) 446
AciI CCGC 4 cut(s) 217, 383, 401, 963
AclWI GGATC 5 cut(s) 469, 497, 510, 924, 937
AcsI RAATTY 3 cut(s) 739, 846, 1005
AcuI CTGAAG 1 cut(s) 51
AdeI CACNNNGTG 1 cut(s) 253
AfaI GTAC 5 cut(s) 58, 82, 128, 545, 1036
AfeI AGCGCT 1 cut(s) 113
AfiI CCNNNNNNNGG 2 cut(s) 561, 974
AgsI TTSAA 6 cut(s) 188, 584, 706, 746, 776, 882
AjnI CCWGG 3 cut(s) 156, 589, 967
AleI CACNNNNGTG 1 cut(s) 662
AloI GAACNNNNNNTCC 2 cut(s) 372, 404
AluBI AGCT 6 cut(s) 308, 365, 414, 630, 797, 959
AluI AGCT 6 cut(s) 308, 365, 414, 630, 797, 959
AlwI GGATC 5 cut(s) 469, 497, 510, 924, 937
Aor51HI AGCGCT 1 cut(s) 113
AoxI GGCC 2 cut(s) 162, 970
ApeKI GCWGC 1 cut(s) 538
ApoI RAATTY 3 cut(s) 739, 846, 1005
AspLEI GCGC 4 cut(s) 114, 263, 446, 448
AspS9I GGNCC 3 cut(s) 167, 587, 965
AsuC2I CCSGG 1 cut(s) 1044
AsuHPI GGTGA 3 cut(s) 235, 914, 1004
AvaII GGWCC 3 cut(s) 167, 587, 965
BaeGI GKGCMC 1 cut(s) 669
BamHI GGATCC 2 cut(s) 502, 929
BanI GGYRCC 2 cut(s) 397, 664
BarI GAAGNNNNNNTAC 2 cut(s) 49, 81
BbvI GCAGC 1 cut(s) 550
BccI CCATC 4 cut(s) 214, 277, 605, 836
BciT130I CCWGG 3 cut(s) 158, 591, 969
BclI TGATCA 1 cut(s) 319
BcnI CCSGG 1 cut(s) 1044
BfaI CTAG 1 cut(s) 828
BfoI RGCGCY 1 cut(s) 115
BisI GCNGC 2 cut(s) 401, 539
BlsI GCNGC 2 cut(s) 402, 540
BmcAI AGTACT 2 cut(s) 58, 545
Bme1390I CCNGG 4 cut(s) 158, 591, 969, 1044
Bme18I GGWCC 3 cut(s) 167, 587, 965
BmgT120I GGNCC 3 cut(s) 167, 587, 965
BmiI GGNNCC 8 cut(s) 6, 153, 282, 399, 504, 595, 666, 931
BmrFI CCNGG 4 cut(s) 158, 591, 969, 1044
BpuMI CCSGG 1 cut(s) 1044
BsaAI YACGTR 1 cut(s) 126
BsaJI CCNNGG 3 cut(s) 156, 478, 973
BsaXI ACNNNNNCTCC 4 cut(s) 265, 295, 372, 402
Bsc4I CCNNNNNNNGG 2 cut(s) 561, 974
Bse118I RCCGGY 1 cut(s) 164
Bse1I ACTGG 1 cut(s) 551
Bse3DI GCAATG 1 cut(s) 455
BseBI CCWGG 3 cut(s) 158, 591, 969
BseDI CCNNGG 3 cut(s) 156, 478, 973
BseGI GGATG 3 cut(s) 225, 238, 793
BseLI CCNNNNNNNGG 2 cut(s) 561, 974
BseMI GCAATG 1 cut(s) 455
BseMII CTCAG 2 cut(s) 122, 453
BseNI ACTGG 1 cut(s) 551
BsePI GCGCGC 1 cut(s) 444
BseSI GKGCMC 1 cut(s) 669
BseXI GCAGC 1 cut(s) 550
Bsh1236I CGCG 1 cut(s) 446
BshFI GGCC 2 cut(s) 164, 972
BshNI GGYRCC 2 cut(s) 397, 664
BsiSI CCGG 3 cut(s) 165, 278, 1044
BslFI GGGAC 1 cut(s) 816
BslI CCNNNNNNNGG 2 cut(s) 561, 974
BsmFI GGGAC 1 cut(s) 816
BsnI GGCC 2 cut(s) 164, 972
Bsp1286I GDGCHC 1 cut(s) 669
Bsp143I GATC 4 cut(s) 319, 474, 502, 929
Bsp19I CCATGG 1 cut(s) 973
BspACI CCGC 4 cut(s) 217, 383, 401, 963
BspANI GGCC 2 cut(s) 164, 972
BspCNI CTCAG 2 cut(s) 121, 452
BspFNI CGCG 1 cut(s) 446
BspLI GGNNCC 8 cut(s) 6, 153, 282, 399, 504, 595, 666, 931
BspPI GGATC 5 cut(s) 469, 497, 510, 924, 937
BspT107I GGYRCC 2 cut(s) 397, 664
BsrBI CCGCTC 1 cut(s) 383
BsrDI GCAATG 1 cut(s) 455
BsrFI RCCGGY 1 cut(s) 164
BsrI ACTGG 1 cut(s) 551
BssAI RCCGGY 1 cut(s) 164
BssECI CCNNGG 3 cut(s) 156, 478, 973
BssHII GCGCGC 1 cut(s) 444
BssMI GATC 4 cut(s) 319, 474, 502, 929
BssT1I CCWWGG 2 cut(s) 478, 973
Bst2UI CCWGG 3 cut(s) 158, 591, 969
Bst4CI ACNGT 1 cut(s) 727
BstAPI GCANNNNNTGC 1 cut(s) 692
BstBAI YACGTR 1 cut(s) 126
BstC8I GCNNGC 3 cut(s) 446, 659, 961
BstDEI CTNAG 3 cut(s) 108, 439, 806
BstDSI CCRYGG 1 cut(s) 973
BstENI CCTNNNNNAGG 1 cut(s) 559
BstF5I GGATG 3 cut(s) 225, 238, 793
BstFNI CGCG 1 cut(s) 446
BstH2I RGCGCY 1 cut(s) 115
BstHHI GCGC 4 cut(s) 114, 263, 446, 448
BstKTI GATC 4 cut(s) 322, 477, 505, 932
BstMBI GATC 4 cut(s) 319, 474, 502, 929
BstMWI GCNNNNNNNGC 7 cut(s) 111, 214, 450, 547, 692, 956, 969
BstNI CCWGG 3 cut(s) 158, 591, 969
BstNSI RCATGY 1 cut(s) 767
BstSCI CCNGG 4 cut(s) 156, 589, 967, 1042
BstSLI GKGCMC 1 cut(s) 669
BstSNI TACGTA 1 cut(s) 126
BstUI CGCG 1 cut(s) 446
BstV1I GCAGC 1 cut(s) 550
BstX2I RGATCY 3 cut(s) 474, 502, 929
BstYI RGATCY 3 cut(s) 474, 502, 929
BsuRI GGCC 2 cut(s) 164, 972
BtgI CCRYGG 1 cut(s) 973
BtsCI GGATG 3 cut(s) 225, 238, 793
BtsI GCAGTG 1 cut(s) 203
BtsIMutI CAGTG 2 cut(s) 203, 837
Cac8I GCNNGC 3 cut(s) 446, 659, 961
CfoI GCGC 4 cut(s) 114, 263, 446, 448
Cfr10I RCCGGY 1 cut(s) 164
Cfr13I GGNCC 3 cut(s) 167, 587, 965
CseI GACGC 1 cut(s) 692
Csp6I GTAC 5 cut(s) 57, 81, 127, 544, 1035
CspCI CAANNNNNGTGG 2 cut(s) 238, 273
CviAII CATG 3 cut(s) 633, 764, 974
CviQI GTAC 5 cut(s) 57, 81, 127, 544, 1035
DdeI CTNAG 3 cut(s) 108, 439, 806
DpnI GATC 4 cut(s) 321, 476, 504, 931
DpnII GATC 4 cut(s) 319, 474, 502, 929
DraIII CACNNNGTG 1 cut(s) 253
Eco105I TACGTA 1 cut(s) 126
Eco130I CCWWGG 2 cut(s) 478, 973
Eco47I GGWCC 3 cut(s) 167, 587, 965
Eco47III AGCGCT 1 cut(s) 113
Eco57I CTGAAG 1 cut(s) 51
EcoNI CCTNNNNNAGG 1 cut(s) 559
EcoO109I RGGNCCY 1 cut(s) 587
EcoRI GAATTC 1 cut(s) 846
EcoRII CCWGG 3 cut(s) 156, 589, 967
EcoT14I CCWWGG 2 cut(s) 478, 973
ErhI CCWWGG 2 cut(s) 478, 973
FaeI CATG 3 cut(s) 636, 767, 977
FaqI GGGAC 1 cut(s) 816
FatI CATG 3 cut(s) 632, 763, 973
FbaI TGATCA 1 cut(s) 319
Fnu4HI GCNGC 2 cut(s) 401, 539
FokI GGATG 3 cut(s) 225, 232, 800
Fsp4HI GCNGC 2 cut(s) 401, 539
FspBI CTAG 1 cut(s) 828
GlaI GCGC 4 cut(s) 113, 262, 445, 447
GluI GCNGC 2 cut(s) 401, 539
HaeII RGCGCY 1 cut(s) 115
HaeIII GGCC 2 cut(s) 164, 972
HapII CCGG 3 cut(s) 165, 278, 1044
HgaI GACGC 1 cut(s) 692
HhaI GCGC 4 cut(s) 114, 263, 446, 448
Hin1II CATG 3 cut(s) 636, 767, 977
Hin6I GCGC 4 cut(s) 112, 261, 444, 446
HinP1I GCGC 4 cut(s) 112, 261, 444, 446
HindIII AAGCTT 2 cut(s) 363, 795
HinfI GANTC 2 cut(s) 886, 978
HpaII CCGG 3 cut(s) 165, 278, 1044
HphI GGTGA 3 cut(s) 235, 914, 1004
Hpy166II GTNNAC 1 cut(s) 943
Hpy188I TCNGA 6 cut(s) 285, 348, 507, 570, 738, 823
Hpy188III TCNNGA 2 cut(s) 170, 706
Hpy8I GTNNAC 1 cut(s) 943
Hpy99I CGWCG 2 cut(s) 686, 950
HpyAV CCTTC 4 cut(s) 194, 343, 578, 712
HpyCH4III ACNGT 1 cut(s) 727
HpyCH4IV ACGT 3 cut(s) 125, 852, 945
HpyCH4V TGCA 8 cut(s) 208, 453, 472, 636, 675, 714, 730, 783
HpyF10VI GCNNNNNNNGC 7 cut(s) 111, 214, 450, 547, 692, 956, 969
HpyF3I CTNAG 3 cut(s) 108, 439, 806
HpySE526I ACGT 3 cut(s) 125, 852, 945
Hsp92II CATG 3 cut(s) 636, 767, 977
HspAI GCGC 4 cut(s) 112, 261, 444, 446
Ksp22I TGATCA 1 cut(s) 319
Kzo9I GATC 4 cut(s) 319, 474, 502, 929
LmnI GCTCC 6 cut(s) 10, 124, 286, 305, 380, 411
Lsp1109I GCAGC 1 cut(s) 550
MaeI CTAG 1 cut(s) 828
MaeII ACGT 3 cut(s) 125, 852, 945
MaeIII GTNAC 3 cut(s) 223, 697, 853
MalI GATC 4 cut(s) 321, 476, 504, 931
MbiI CCGCTC 1 cut(s) 383
MboI GATC 4 cut(s) 319, 474, 502, 929
MboII GAAGA 1 cut(s) 383
MfeI CAATTG 1 cut(s) 670
MflI RGATCY 3 cut(s) 474, 502, 929
MhlI GDGCHC 1 cut(s) 669
MluCI AATT 8 cut(s) 17, 137, 428, 670, 739, 778, 846, 1005
MlyI GAGTC 1 cut(s) 895
MmeI TCCRAC 1 cut(s) 399
MnlI CCTC 8 cut(s) 56, 154, 331, 382, 493, 555, 817, 920
MseI TTAA 3 cut(s) 423, 792, 1048
MslI CAYNNNNRTG 3 cut(s) 327, 662, 881
MspI CCGG 3 cut(s) 165, 278, 1044
MspR9I CCNGG 4 cut(s) 158, 591, 969, 1044
MunI CAATTG 1 cut(s) 670
MvaI CCWGG 3 cut(s) 158, 591, 969
MvnI CGCG 1 cut(s) 446
MwoI GCNNNNNNNGC 7 cut(s) 111, 214, 450, 547, 692, 956, 969
NciI CCSGG 1 cut(s) 1044
NcoI CCATGG 1 cut(s) 973
NdeII GATC 4 cut(s) 319, 474, 502, 929
NlaIII CATG 3 cut(s) 636, 767, 977
NlaIV GGNNCC 8 cut(s) 6, 153, 282, 399, 504, 595, 666, 931
NmuCI GTSAC 1 cut(s) 223
NspI RCATGY 1 cut(s) 767
OliI CACNNNNGTG 1 cut(s) 662
PauI GCGCGC 1 cut(s) 444
PfeI GAWTC 1 cut(s) 978
PflMI CCANNNNNTGG 1 cut(s) 974
PfoI TCCNGGA 1 cut(s) 589
PkrI GCNGC 2 cut(s) 402, 540
PleI GAGTC 1 cut(s) 894
PpsI GAGTC 1 cut(s) 894
Ppu21I YACGTR 1 cut(s) 126
PpuMI RGGWCCY 1 cut(s) 587
Psp5II RGGWCCY 1 cut(s) 587
Psp6I CCWGG 3 cut(s) 156, 589, 967
PspGI CCWGG 3 cut(s) 156, 589, 967
PspN4I GGNNCC 8 cut(s) 6, 153, 282, 399, 504, 595, 666, 931
PspPI GGNCC 3 cut(s) 167, 587, 965
PspPPI RGGWCCY 1 cut(s) 587
PsuI RGATCY 3 cut(s) 474, 502, 929
PteI GCGCGC 1 cut(s) 444
RsaI GTAC 5 cut(s) 58, 82, 128, 545, 1036
RsaNI GTAC 5 cut(s) 57, 81, 127, 544, 1035
RseI CAYNNNNRTG 3 cut(s) 327, 662, 881
SaqAI TTAA 3 cut(s) 423, 792, 1048
SatI GCNGC 2 cut(s) 401, 539
Sau3AI GATC 4 cut(s) 319, 474, 502, 929
Sau96I GGNCC 3 cut(s) 167, 587, 965
ScaI AGTACT 2 cut(s) 58, 545
SchI GAGTC 1 cut(s) 895
ScrFI CCNGG 4 cut(s) 158, 591, 969, 1044
SduI GDGCHC 1 cut(s) 669
SinI GGWCC 3 cut(s) 167, 587, 965
SmiMI CAYNNNNRTG 3 cut(s) 327, 662, 881
SnaBI TACGTA 1 cut(s) 126
Sse9I AATT 8 cut(s) 17, 137, 428, 670, 739, 778, 846, 1005
SsiI CCGC 4 cut(s) 217, 383, 401, 963
SspMI CTAG 1 cut(s) 828
StyD4I CCNGG 4 cut(s) 156, 589, 967, 1042
StyI CCWWGG 2 cut(s) 478, 973
TaaI ACNGT 1 cut(s) 727
TaiI ACGT 3 cut(s) 128, 855, 948
TaqI TCGA 1 cut(s) 873
TasI AATT 8 cut(s) 17, 137, 428, 670, 739, 778, 846, 1005
TatI WGTACW 2 cut(s) 56, 543
TauI GCSGC 1 cut(s) 403
TfiI GAWTC 1 cut(s) 978
Tru1I TTAA 3 cut(s) 423, 792, 1048
Tru9I TTAA 3 cut(s) 423, 792, 1048
TscAI CASTG 2 cut(s) 210, 844
TseFI GTSAC 1 cut(s) 223
TseI GCWGC 1 cut(s) 538
Tsp45I GTSAC 1 cut(s) 223
TspDTI ATGAA 1 cut(s) 227
TspGWI ACGGA 3 cut(s) 393, 624, 800
TspRI CASTG 2 cut(s) 210, 844
Van91I CCANNNNNTGG 1 cut(s) 974
VpaK11BI GGWCC 3 cut(s) 167, 587, 965
XagI CCTNNNNNAGG 1 cut(s) 559
XapI RAATTY 3 cut(s) 739, 846, 1005
XceI RCATGY 1 cut(s) 767
XcmI CCANNNNNNNNNTGG 1 cut(s) 382
XspI CTAG 1 cut(s) 828
ZrmI AGTACT 2 cut(s) 58, 545
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.