Rh6DG410800

deSI-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0002011
Physical Location & Seq
Reverse (-)
59687956 .. 59691434
3479 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG410800.1

Sequence Viewer

Length: 963 bp
ATGGAACATGCATTCCCATCCTCATTTTGCTTCTTCAGTATTTTGTGGCCACCAGTTGGAAGTTGGAGGAATACAAAGAGCTCTCTCTCTCATAGCAGTTGTTGGTTACTGAAGCAGAGAGCTAGCTGCTGCTGGGTTTTGCTGGGCTCCAATGGCTTCTGTCTTCTCTTAATCTACTGGAGGCAAGCATTGACTGTTTTCTGGTCACACTATCAACAAAACATGAAATTTGAATTAAAGAAAAGATGGAAATCAATTGTCCCACTTCAGTTGAAACACAAATCAGCCACCCGTTTTTCTTTATTTCCCAAATCGAAGTCAGATTTTGGTCCGGGCAAAGCACCTGTATATCTCAATGTATATGACTTGACACCCATGAATGGCTATGTCTATTGGGCAGGCTTTGGAATTTTTCACTCTGGTGTTGAAGTTCATGGTGTTGAATATGCATTTGGAGCACATGACTACCCTACCAGTGGTGTTTTTGAGGTTGAACCTCGGCAATGCCCAGGATTCAAGTTCAGGAAATCTATATTTATTGGGACAACAAGCTTAGACCCTATTCAGGTTAGAGAGTTCATGGAGCGCCAGTCATTGAGGTACAATGGTGATACATATCACCTGATTGTCAAGAATTGCAACCATTTCTGCAGAGATATCTGTTACAAGCTAACTGGGAAATCAATTCCAAAGTGGGTAAATCGACTGGCAAGAATAGGTTCAATATGCAACTGCATACTTCCTGAAGCGCTAAAGATTTCTGCTGTACAACATGACCCTAACAACCAACCATATGATAGTGAGAAGAGGAGTTTGAGAAGTGCCTTCAGTTGCCTGTCTTCTATCTCAATGCGGCAGAAGCAATTGTCATCATCTTCATTGTTTCTACAGTCACCCTTGAAAGGCTGCTTGCCACCATGGGAATTAAGAAGGTCAAACAATGGTTCCTTGAAGGAAAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_C97

Protein Analysis

320

Amino Acids

36.81

Weight (kDa)

9.59

Isoelectric Point (pI)

46.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_C97 PF05903 115 - 250 1.2e-49 PPPDE putative peptidase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 56
AciI CCGC 1 cut(s) 853
AcoI YGGCCR 1 cut(s) 47
AcsI RAATTY 2 cut(s) 227, 408
AcuI CTGAAG 5 cut(s) 19, 131, 251, 765, 811
AfaI GTAC 2 cut(s) 602, 768
AfeI AGCGCT 1 cut(s) 750
AfiI CCNNNNNNNGG 5 cut(s) 56, 380, 476, 565, 902
AgsI TTSAA 9 cut(s) 233, 274, 428, 443, 494, 517, 723, 901, 952
AjnI CCWGG 1 cut(s) 508
AjuI GAANNNNNNNTTGG 2 cut(s) 435, 467
AleI CACNNNNGTG 1 cut(s) 420
AloI GAACNNNNNNTCC 1 cut(s) 29
AluBI AGCT 5 cut(s) 81, 122, 126, 552, 670
AluI AGCT 5 cut(s) 81, 122, 126, 552, 670
Alw21I GWGCWC 2 cut(s) 83, 460
Aor51HI AGCGCT 1 cut(s) 750
AoxI GGCC 1 cut(s) 47
ApeKI GCWGC 3 cut(s) 126, 129, 906
ApoI RAATTY 2 cut(s) 227, 408
Asp700I GAANNNNTTC 1 cut(s) 718
AspLEI GCGC 2 cut(s) 588, 751
AspS9I GGNCC 1 cut(s) 329
AsuC2I CCSGG 1 cut(s) 333
AsuHPI GGTGA 3 cut(s) 611, 620, 885
AsuNHI GCTAGC 1 cut(s) 122
AvaII GGWCC 1 cut(s) 329
BaeI ACNNNNGTAYC 2 cut(s) 592, 625
BalI TGGCCA 1 cut(s) 49
BanII GRGCYC 2 cut(s) 83, 149
BbsI GAAGAC 2 cut(s) 155, 831
Bbv12I GWGCWC 2 cut(s) 83, 460
BbvI GCAGC 3 cut(s) 113, 116, 893
BccI CCATC 2 cut(s) 25, 240
BciT130I CCWGG 1 cut(s) 510
BcnI CCSGG 1 cut(s) 333
BfaI CTAG 1 cut(s) 123
BfmI CTRYAG 2 cut(s) 649, 887
BfoI RGCGCY 2 cut(s) 589, 752
BisI GCNGC 4 cut(s) 127, 130, 854, 907
BlsI GCNGC 4 cut(s) 128, 131, 855, 908
Bme1390I CCNGG 2 cut(s) 333, 510
Bme18I GGWCC 1 cut(s) 329
BmgT120I GGNCC 1 cut(s) 329
BmiI GGNNCC 2 cut(s) 148, 946
BmrFI CCNGG 2 cut(s) 333, 510
BmrI ACTGGG 1 cut(s) 684
BmtI GCTAGC 1 cut(s) 126
BmuI ACTGGG 1 cut(s) 684
BpiI GAAGAC 2 cut(s) 155, 831
BpmI CTGGAG 1 cut(s) 199
BpuMI CCSGG 1 cut(s) 333
BsaBI GATNNNNATC 2 cut(s) 250, 615
BsaJI CCNNGG 3 cut(s) 497, 508, 917
BsaXI ACNNNNNCTCC 2 cut(s) 575, 605
Bsc4I CCNNNNNNNGG 5 cut(s) 56, 380, 476, 565, 902
Bse1I ACTGG 6 cut(s) 53, 182, 474, 589, 679, 711
Bse3DI GCAATG 1 cut(s) 509
Bse8I GATNNNNATC 2 cut(s) 250, 615
BseBI CCWGG 1 cut(s) 510
BseDI CCNNGG 3 cut(s) 497, 508, 917
BseGI GGATG 1 cut(s) 17
BseJI GATNNNNATC 2 cut(s) 250, 615
BseLI CCNNNNNNNGG 5 cut(s) 56, 380, 476, 565, 902
BseMI GCAATG 1 cut(s) 509
BseNI ACTGG 6 cut(s) 53, 182, 474, 589, 679, 711
BseRI GAGGAG 1 cut(s) 823
BseXI GCAGC 3 cut(s) 113, 116, 893
BseYI CCCAGC 2 cut(s) 132, 142
BshFI GGCC 1 cut(s) 49
BsiHKAI GWGCWC 2 cut(s) 83, 460
BsiSI CCGG 1 cut(s) 332
BslFI GGGAC 2 cut(s) 245, 556
BslI CCNNNNNNNGG 5 cut(s) 56, 380, 476, 565, 902
BsmFI GGGAC 2 cut(s) 245, 556
BsmI GAATGC 1 cut(s) 11
BsnI GGCC 1 cut(s) 49
Bsp1286I GDGCHC 3 cut(s) 83, 149, 460
Bsp1407I TGTACA 1 cut(s) 766
Bsp19I CCATGG 1 cut(s) 917
BspACI CCGC 1 cut(s) 853
BspANI GGCC 1 cut(s) 49
BspLI GGNNCC 2 cut(s) 148, 946
BspMAI CTGCAG 1 cut(s) 653
BspOI GCTAGC 1 cut(s) 126
BsrDI GCAATG 1 cut(s) 509
BsrGI TGTACA 1 cut(s) 766
BsrI ACTGG 6 cut(s) 53, 182, 474, 589, 679, 711
BssECI CCNNGG 3 cut(s) 497, 508, 917
BssT1I CCWWGG 1 cut(s) 917
Bst2UI CCWGG 1 cut(s) 510
Bst4CI ACNGT 2 cut(s) 196, 891
Bst6I CTCTTC 1 cut(s) 800
BstAUI TGTACA 1 cut(s) 766
BstC8I GCNNGC 4 cut(s) 124, 186, 400, 911
BstDEI CTNAG 1 cut(s) 553
BstDSI CCRYGG 1 cut(s) 917
BstF5I GGATG 1 cut(s) 17
BstH2I RGCGCY 2 cut(s) 589, 752
BstHHI GCGC 2 cut(s) 588, 751
BstMWI GCNNNNNNNGC 3 cut(s) 153, 455, 859
BstNI CCWGG 1 cut(s) 510
BstNSI RCATGY 1 cut(s) 11
BstSCI CCNGG 2 cut(s) 331, 508
BstSFI CTRYAG 2 cut(s) 649, 887
BstV1I GCAGC 3 cut(s) 113, 116, 893
BstV2I GAAGAC 2 cut(s) 155, 831
BsuRI GGCC 1 cut(s) 49
BtgI CCRYGG 1 cut(s) 917
BtsCI GGATG 1 cut(s) 17
BtsIMutI CAGTG 1 cut(s) 481
Cac8I GCNNGC 4 cut(s) 124, 186, 400, 911
CfoI GCGC 2 cut(s) 588, 751
Cfr13I GGNCC 1 cut(s) 329
Csp6I GTAC 2 cut(s) 601, 767
CspCI CAANNNNNGTGG 2 cut(s) 252, 287
CviAII CATG 8 cut(s) 8, 223, 376, 434, 461, 580, 773, 918
CviQI GTAC 2 cut(s) 601, 767
DdeI CTNAG 1 cut(s) 553
EaeI YGGCCR 1 cut(s) 47
Eam1104I CTCTTC 1 cut(s) 800
EarI CTCTTC 1 cut(s) 800
Ecl136II GAGCTC 1 cut(s) 81
Eco130I CCWWGG 1 cut(s) 917
Eco24I GRGCYC 2 cut(s) 83, 149
Eco32I GATATC 1 cut(s) 658
Eco47I GGWCC 1 cut(s) 329
Eco47III AGCGCT 1 cut(s) 750
Eco53kI GAGCTC 1 cut(s) 81
Eco57I CTGAAG 5 cut(s) 19, 131, 251, 765, 811
EcoICRI GAGCTC 1 cut(s) 81
EcoRII CCWGG 1 cut(s) 508
EcoRV GATATC 1 cut(s) 658
EcoT14I CCWWGG 1 cut(s) 917
EcoT22I ATGCAT 2 cut(s) 13, 451
EcoT38I GRGCYC 2 cut(s) 83, 149
ErhI CCWWGG 1 cut(s) 917
FaeI CATG 8 cut(s) 11, 226, 379, 437, 464, 583, 776, 921
FaqI GGGAC 2 cut(s) 245, 556
FatI CATG 8 cut(s) 7, 222, 375, 433, 460, 579, 772, 917
FauNDI CATATG 1 cut(s) 793
Fnu4HI GCNGC 4 cut(s) 127, 130, 854, 907
FokI GGATG 1 cut(s) 4
FriOI GRGCYC 2 cut(s) 83, 149
Fsp4HI GCNGC 4 cut(s) 127, 130, 854, 907
FspBI CTAG 1 cut(s) 123
GlaI GCGC 2 cut(s) 587, 750
GluI GCNGC 4 cut(s) 127, 130, 854, 907
GsaI CCCAGC 2 cut(s) 136, 146
GsuI CTGGAG 1 cut(s) 199
HaeII RGCGCY 2 cut(s) 589, 752
HaeIII GGCC 1 cut(s) 49
HapII CCGG 1 cut(s) 332
HhaI GCGC 2 cut(s) 588, 751
Hin1II CATG 8 cut(s) 11, 226, 379, 437, 464, 583, 776, 921
Hin6I GCGC 2 cut(s) 586, 749
HinP1I GCGC 2 cut(s) 586, 749
HindIII AAGCTT 1 cut(s) 550
HinfI GANTC 1 cut(s) 513
HpaII CCGG 1 cut(s) 332
HphI GGTGA 3 cut(s) 611, 620, 885
Hpy188I TCNGA 1 cut(s) 322
Hpy188III TCNNGA 3 cut(s) 523, 631, 743
HpyAV CCTTC 3 cut(s) 835, 924, 946
HpyCH4III ACNGT 2 cut(s) 196, 891
HpyCH4V TGCA 6 cut(s) 11, 449, 639, 651, 729, 735
HpyF10VI GCNNNNNNNGC 3 cut(s) 153, 455, 859
HpyF3I CTNAG 1 cut(s) 553
Hsp92II CATG 8 cut(s) 11, 226, 379, 437, 464, 583, 776, 921
HspAI GCGC 2 cut(s) 586, 749
LmnI GCTCC 3 cut(s) 152, 455, 583
Lsp1109I GCAGC 3 cut(s) 113, 116, 893
MaeI CTAG 1 cut(s) 123
MaeIII GTNAC 4 cut(s) 105, 204, 662, 891
MboII GAAGA 5 cut(s) 25, 155, 817, 831, 867
MfeI CAATTG 2 cut(s) 255, 863
MhlI GDGCHC 3 cut(s) 83, 149, 460
MlsI TGGCCA 1 cut(s) 49
MluCI AATT 8 cut(s) 227, 233, 255, 408, 634, 684, 863, 923
MluNI TGGCCA 1 cut(s) 49
MmeI TCCRAC 2 cut(s) 37, 44
MnlI CCTC 7 cut(s) 31, 60, 174, 481, 507, 591, 801
Mox20I TGGCCA 1 cut(s) 49
Mph1103I ATGCAT 2 cut(s) 13, 451
MroXI GAANNNNTTC 1 cut(s) 718
MscI TGGCCA 1 cut(s) 49
MseI TTAA 3 cut(s) 170, 236, 926
MslI CAYNNNNRTG 1 cut(s) 420
Msp20I TGGCCA 1 cut(s) 49
MspI CCGG 1 cut(s) 332
MspR9I CCNGG 2 cut(s) 333, 510
MunI CAATTG 2 cut(s) 255, 863
Mva1269I GAATGC 1 cut(s) 11
MvaI CCWGG 1 cut(s) 510
MwoI GCNNNNNNNGC 3 cut(s) 153, 455, 859
NciI CCSGG 1 cut(s) 333
NcoI CCATGG 1 cut(s) 917
NdeI CATATG 1 cut(s) 793
NheI GCTAGC 1 cut(s) 122
NlaIII CATG 8 cut(s) 11, 226, 379, 437, 464, 583, 776, 921
NlaIV GGNNCC 2 cut(s) 148, 946
NmeAIII GCCGAG 1 cut(s) 478
NmuCI GTSAC 2 cut(s) 204, 891
NsiI ATGCAT 2 cut(s) 13, 451
NspI RCATGY 1 cut(s) 11
OliI CACNNNNGTG 1 cut(s) 420
PctI GAATGC 1 cut(s) 11
PdmI GAANNNNTTC 1 cut(s) 718
PfeI GAWTC 1 cut(s) 513
PflMI CCANNNNNTGG 1 cut(s) 56
PkrI GCNGC 4 cut(s) 128, 131, 855, 908
Psp124BI GAGCTC 1 cut(s) 83
Psp6I CCWGG 1 cut(s) 508
PspFI CCCAGC 2 cut(s) 132, 142
PspGI CCWGG 1 cut(s) 508
PspN4I GGNNCC 2 cut(s) 148, 946
PspPI GGNCC 1 cut(s) 329
PstI CTGCAG 1 cut(s) 653
RsaI GTAC 2 cut(s) 602, 768
RsaNI GTAC 2 cut(s) 601, 767
RseI CAYNNNNRTG 1 cut(s) 420
SacI GAGCTC 1 cut(s) 83
SaqAI TTAA 3 cut(s) 170, 236, 926
SatI GCNGC 4 cut(s) 127, 130, 854, 907
Sau96I GGNCC 1 cut(s) 329
ScrFI CCNGG 2 cut(s) 333, 510
SduI GDGCHC 3 cut(s) 83, 149, 460
SfcI CTRYAG 2 cut(s) 649, 887
SinI GGWCC 1 cut(s) 329
SmiMI CAYNNNNRTG 1 cut(s) 420
Sse9I AATT 8 cut(s) 227, 233, 255, 408, 634, 684, 863, 923
SsiI CCGC 1 cut(s) 853
SspMI CTAG 1 cut(s) 123
SstI GAGCTC 1 cut(s) 83
StyD4I CCNGG 2 cut(s) 331, 508
StyI CCWWGG 1 cut(s) 917
TaaI ACNGT 2 cut(s) 196, 891
TaqI TCGA 2 cut(s) 314, 703
TasI AATT 8 cut(s) 227, 233, 255, 408, 634, 684, 863, 923
TatI WGTACW 1 cut(s) 766
TauI GCSGC 1 cut(s) 856
TfiI GAWTC 1 cut(s) 513
Tru1I TTAA 3 cut(s) 170, 236, 926
Tru9I TTAA 3 cut(s) 170, 236, 926
TscAI CASTG 1 cut(s) 481
TseFI GTSAC 2 cut(s) 204, 891
TseI GCWGC 3 cut(s) 126, 129, 906
Tsp45I GTSAC 2 cut(s) 204, 891
TspDTI ATGAA 5 cut(s) 239, 392, 422, 568, 867
TspRI CASTG 1 cut(s) 481
Van91I CCANNNNNTGG 1 cut(s) 56
VpaK11BI GGWCC 1 cut(s) 329
XapI RAATTY 2 cut(s) 227, 408
XceI RCATGY 1 cut(s) 11
XcmI CCANNNNNNNNNTGG 1 cut(s) 60
XmnI GAANNNNTTC 1 cut(s) 718
XspI CTAG 1 cut(s) 123
Zsp2I ATGCAT 2 cut(s) 13, 451
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.