Rh6BG417900

deSI-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0002011
Physical Location & Seq
Reverse (-)
64253794 .. 64257268
3475 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG417900.1

Sequence Viewer

Length: 978 bp
ATGGAACATGCATTCCCATCCTCATTTTGCTTCTTCAGTATTTTGTGGCCACCGGCCAGTTGGAAGTTGGAGGAATACAAAGAGCTCTCTCTCTCTCATAGCAGTTGTTGGTTACTGAAGCAGAGAGCTAGCTGCTGCTGCTGCTGCTGGGTTTTGCTGGGCTCCAATGGCTTCTGTCTTCTCTTAATCTACTGGAGGCAAGCATTGACTGTTTTCTGGTCACACTATCAACAAAACATGAAATTTGAATTAAAGAAAAGATGGAAATCAATTGTCCCACTTCAGTTGAAACACAAATCAGCCACCCGTTTTTCTTTATTTCCCAAATCGAAGTCAGATTTTGGTCCGGGCAAAGCACCTGTATATCTCAATGTATATGACTTGACACCCATGAATGGCTATGTCTATTGGGCAGGCTTTGGAATTTTTCACTCTGGTGTTGAAGTTCATGGTGTTGAATATGCATTTGGAGCACATGACTACCCTACCAGTGGTGTTTTTGAGGTTGAACCTCGGCAATGCCCAGGATTCAAGTTCAGGAAATCTATATTTATTGGGACCACAAGCTTAGACCCTATTCAGGTTAGAGAGTTCATGGAGCGCCAGTCATTGAGGTACAATGGTGATACATATCACCTGATTGTCAAGAATTGCAACCATTTCTGCAGAGATATCTGTTACAAGCTAACTGGGAAATCAATTCCAAAGTGGGTAAATCGACTGGCAAGAATAGGTTCAATATGCAACTGCATACTTCCTGAAGCGCTAAAGATTTCTGCTGTACAACATGACCCTAACAACCAACCATATGATAGTGAGAAGAGGAGTTTGAGAAGTGCCTTCAGTTGCCTGTCTTCTATCTCAATGCGGCAGAAGCAATTGTCATCATCTTCAATGTTTCTACAGTCACCCTTGAAAGGCTGCTTGCCACCATGGGAATTAAGAAGGTCAAACAATGGTTCCTTGAAGGAAAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_C97

Protein Analysis

325

Amino Acids

37.5

Weight (kDa)

9.32

Isoelectric Point (pI)

46.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_C97 PF05903 120 - 255 1.2e-49 PPPDE putative peptidase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 868
AcoI YGGCCR 2 cut(s) 47, 54
AcsI RAATTY 2 cut(s) 242, 423
AcuI CTGAAG 5 cut(s) 19, 137, 266, 780, 826
AfaI GTAC 2 cut(s) 617, 783
AfeI AGCGCT 1 cut(s) 765
AfiI CCNNNNNNNGG 4 cut(s) 395, 491, 580, 917
AjnI CCWGG 1 cut(s) 523
AjuI GAANNNNNNNTTGG 2 cut(s) 450, 482
AleI CACNNNNGTG 1 cut(s) 435
AloI GAACNNNNNNTCC 1 cut(s) 29
AluBI AGCT 5 cut(s) 85, 128, 132, 567, 685
AluI AGCT 5 cut(s) 85, 128, 132, 567, 685
Alw21I GWGCWC 2 cut(s) 87, 475
Aor51HI AGCGCT 1 cut(s) 765
AoxI GGCC 2 cut(s) 47, 54
ApeKI GCWGC 6 cut(s) 132, 135, 138, 141, 144, 921
ApoI RAATTY 2 cut(s) 242, 423
Asp700I GAANNNNTTC 1 cut(s) 733
AspLEI GCGC 2 cut(s) 603, 766
AspS9I GGNCC 2 cut(s) 344, 558
AsuC2I CCSGG 1 cut(s) 348
AsuHPI GGTGA 3 cut(s) 626, 635, 900
AsuNHI GCTAGC 1 cut(s) 128
AvaII GGWCC 2 cut(s) 344, 558
BaeI ACNNNNGTAYC 2 cut(s) 607, 640
BalI TGGCCA 1 cut(s) 49
BanII GRGCYC 2 cut(s) 87, 164
BbsI GAAGAC 2 cut(s) 170, 846
Bbv12I GWGCWC 2 cut(s) 87, 475
BbvI GCAGC 6 cut(s) 119, 122, 125, 128, 131, 908
BccI CCATC 2 cut(s) 25, 255
BciT130I CCWGG 1 cut(s) 525
BcnI CCSGG 1 cut(s) 348
BfaI CTAG 1 cut(s) 129
BfmI CTRYAG 2 cut(s) 664, 902
BfoI RGCGCY 2 cut(s) 604, 767
BisI GCNGC 7 cut(s) 133, 136, 139, 142, 145, 869, 922
BlsI GCNGC 7 cut(s) 134, 137, 140, 143, 146, 870, 923
Bme1390I CCNGG 2 cut(s) 348, 525
Bme18I GGWCC 2 cut(s) 344, 558
BmgT120I GGNCC 2 cut(s) 344, 558
BmiI GGNNCC 3 cut(s) 163, 559, 961
BmrFI CCNGG 2 cut(s) 348, 525
BmrI ACTGGG 1 cut(s) 699
BmtI GCTAGC 1 cut(s) 132
BmuI ACTGGG 1 cut(s) 699
BpiI GAAGAC 2 cut(s) 170, 846
BpmI CTGGAG 1 cut(s) 214
BpuMI CCSGG 1 cut(s) 348
BsaBI GATNNNNATC 2 cut(s) 265, 630
BsaJI CCNNGG 3 cut(s) 512, 523, 932
BsaXI ACNNNNNCTCC 2 cut(s) 590, 620
Bsc4I CCNNNNNNNGG 4 cut(s) 395, 491, 580, 917
Bse118I RCCGGY 1 cut(s) 52
Bse1I ACTGG 6 cut(s) 57, 197, 489, 604, 694, 726
Bse3DI GCAATG 1 cut(s) 524
Bse8I GATNNNNATC 2 cut(s) 265, 630
BseBI CCWGG 1 cut(s) 525
BseDI CCNNGG 3 cut(s) 512, 523, 932
BseGI GGATG 1 cut(s) 17
BseJI GATNNNNATC 2 cut(s) 265, 630
BseLI CCNNNNNNNGG 4 cut(s) 395, 491, 580, 917
BseMI GCAATG 1 cut(s) 524
BseNI ACTGG 6 cut(s) 57, 197, 489, 604, 694, 726
BseRI GAGGAG 1 cut(s) 838
BseXI GCAGC 6 cut(s) 119, 122, 125, 128, 131, 908
BseYI CCCAGC 2 cut(s) 147, 157
BshFI GGCC 2 cut(s) 49, 56
BsiHKAI GWGCWC 2 cut(s) 87, 475
BsiSI CCGG 2 cut(s) 53, 347
BslFI GGGAC 2 cut(s) 260, 571
BslI CCNNNNNNNGG 4 cut(s) 395, 491, 580, 917
BsmFI GGGAC 2 cut(s) 260, 571
BsmI GAATGC 1 cut(s) 11
BsnI GGCC 2 cut(s) 49, 56
Bsp1286I GDGCHC 3 cut(s) 87, 164, 475
Bsp1407I TGTACA 1 cut(s) 781
Bsp19I CCATGG 1 cut(s) 932
BspACI CCGC 1 cut(s) 868
BspANI GGCC 2 cut(s) 49, 56
BspLI GGNNCC 3 cut(s) 163, 559, 961
BspMAI CTGCAG 1 cut(s) 668
BspOI GCTAGC 1 cut(s) 132
BsrDI GCAATG 1 cut(s) 524
BsrFI RCCGGY 1 cut(s) 52
BsrGI TGTACA 1 cut(s) 781
BsrI ACTGG 6 cut(s) 57, 197, 489, 604, 694, 726
BssAI RCCGGY 1 cut(s) 52
BssECI CCNNGG 3 cut(s) 512, 523, 932
BssT1I CCWWGG 1 cut(s) 932
Bst2UI CCWGG 1 cut(s) 525
Bst4CI ACNGT 2 cut(s) 211, 906
Bst6I CTCTTC 1 cut(s) 815
BstAUI TGTACA 1 cut(s) 781
BstC8I GCNNGC 4 cut(s) 130, 201, 415, 926
BstDEI CTNAG 1 cut(s) 568
BstDSI CCRYGG 1 cut(s) 932
BstF5I GGATG 1 cut(s) 17
BstH2I RGCGCY 2 cut(s) 604, 767
BstHHI GCGC 2 cut(s) 603, 766
BstMWI GCNNNNNNNGC 6 cut(s) 138, 141, 144, 168, 470, 874
BstNI CCWGG 1 cut(s) 525
BstNSI RCATGY 1 cut(s) 11
BstSCI CCNGG 2 cut(s) 346, 523
BstSFI CTRYAG 2 cut(s) 664, 902
BstV1I GCAGC 6 cut(s) 119, 122, 125, 128, 131, 908
BstV2I GAAGAC 2 cut(s) 170, 846
BsuRI GGCC 2 cut(s) 49, 56
BtgI CCRYGG 1 cut(s) 932
BtsCI GGATG 1 cut(s) 17
BtsIMutI CAGTG 1 cut(s) 496
Cac8I GCNNGC 4 cut(s) 130, 201, 415, 926
CfoI GCGC 2 cut(s) 603, 766
Cfr10I RCCGGY 1 cut(s) 52
Cfr13I GGNCC 2 cut(s) 344, 558
Csp6I GTAC 2 cut(s) 616, 782
CspCI CAANNNNNGTGG 2 cut(s) 267, 302
CviAII CATG 8 cut(s) 8, 238, 391, 449, 476, 595, 788, 933
CviQI GTAC 2 cut(s) 616, 782
DdeI CTNAG 1 cut(s) 568
EaeI YGGCCR 2 cut(s) 47, 54
Eam1104I CTCTTC 1 cut(s) 815
EarI CTCTTC 1 cut(s) 815
Ecl136II GAGCTC 1 cut(s) 85
Eco130I CCWWGG 1 cut(s) 932
Eco24I GRGCYC 2 cut(s) 87, 164
Eco32I GATATC 1 cut(s) 673
Eco47I GGWCC 2 cut(s) 344, 558
Eco47III AGCGCT 1 cut(s) 765
Eco53kI GAGCTC 1 cut(s) 85
Eco57I CTGAAG 5 cut(s) 19, 137, 266, 780, 826
EcoICRI GAGCTC 1 cut(s) 85
EcoRII CCWGG 1 cut(s) 523
EcoRV GATATC 1 cut(s) 673
EcoT14I CCWWGG 1 cut(s) 932
EcoT22I ATGCAT 2 cut(s) 13, 466
EcoT38I GRGCYC 2 cut(s) 87, 164
ErhI CCWWGG 1 cut(s) 932
FaeI CATG 8 cut(s) 11, 241, 394, 452, 479, 598, 791, 936
FaqI GGGAC 2 cut(s) 260, 571
FatI CATG 8 cut(s) 7, 237, 390, 448, 475, 594, 787, 932
FauNDI CATATG 1 cut(s) 808
Fnu4HI GCNGC 7 cut(s) 133, 136, 139, 142, 145, 869, 922
FokI GGATG 1 cut(s) 4
FriOI GRGCYC 2 cut(s) 87, 164
Fsp4HI GCNGC 7 cut(s) 133, 136, 139, 142, 145, 869, 922
FspBI CTAG 1 cut(s) 129
GlaI GCGC 2 cut(s) 602, 765
GluI GCNGC 7 cut(s) 133, 136, 139, 142, 145, 869, 922
GsaI CCCAGC 2 cut(s) 151, 161
GsuI CTGGAG 1 cut(s) 214
HaeII RGCGCY 2 cut(s) 604, 767
HaeIII GGCC 2 cut(s) 49, 56
HapII CCGG 2 cut(s) 53, 347
HhaI GCGC 2 cut(s) 603, 766
Hin1II CATG 8 cut(s) 11, 241, 394, 452, 479, 598, 791, 936
Hin6I GCGC 2 cut(s) 601, 764
HinP1I GCGC 2 cut(s) 601, 764
HindIII AAGCTT 1 cut(s) 565
HinfI GANTC 1 cut(s) 528
HpaII CCGG 2 cut(s) 53, 347
HphI GGTGA 3 cut(s) 626, 635, 900
Hpy188I TCNGA 1 cut(s) 337
Hpy188III TCNNGA 3 cut(s) 538, 646, 758
HpyAV CCTTC 3 cut(s) 850, 939, 961
HpyCH4III ACNGT 2 cut(s) 211, 906
HpyCH4V TGCA 6 cut(s) 11, 464, 654, 666, 744, 750
HpyF10VI GCNNNNNNNGC 6 cut(s) 138, 141, 144, 168, 470, 874
HpyF3I CTNAG 1 cut(s) 568
Hsp92II CATG 8 cut(s) 11, 241, 394, 452, 479, 598, 791, 936
HspAI GCGC 2 cut(s) 601, 764
LmnI GCTCC 3 cut(s) 167, 470, 598
Lsp1109I GCAGC 6 cut(s) 119, 122, 125, 128, 131, 908
MaeI CTAG 1 cut(s) 129
MaeIII GTNAC 4 cut(s) 111, 219, 677, 906
MboII GAAGA 5 cut(s) 25, 170, 832, 846, 882
MfeI CAATTG 2 cut(s) 270, 878
MhlI GDGCHC 3 cut(s) 87, 164, 475
MlsI TGGCCA 1 cut(s) 49
MluCI AATT 8 cut(s) 242, 248, 270, 423, 649, 699, 878, 938
MluNI TGGCCA 1 cut(s) 49
MmeI TCCRAC 2 cut(s) 41, 48
MnlI CCTC 7 cut(s) 31, 64, 189, 496, 522, 606, 816
Mox20I TGGCCA 1 cut(s) 49
Mph1103I ATGCAT 2 cut(s) 13, 466
MroXI GAANNNNTTC 1 cut(s) 733
MscI TGGCCA 1 cut(s) 49
MseI TTAA 3 cut(s) 185, 251, 941
MslI CAYNNNNRTG 1 cut(s) 435
Msp20I TGGCCA 1 cut(s) 49
MspI CCGG 2 cut(s) 53, 347
MspR9I CCNGG 2 cut(s) 348, 525
MunI CAATTG 2 cut(s) 270, 878
Mva1269I GAATGC 1 cut(s) 11
MvaI CCWGG 1 cut(s) 525
MwoI GCNNNNNNNGC 6 cut(s) 138, 141, 144, 168, 470, 874
NciI CCSGG 1 cut(s) 348
NcoI CCATGG 1 cut(s) 932
NdeI CATATG 1 cut(s) 808
NheI GCTAGC 1 cut(s) 128
NlaIII CATG 8 cut(s) 11, 241, 394, 452, 479, 598, 791, 936
NlaIV GGNNCC 3 cut(s) 163, 559, 961
NmeAIII GCCGAG 1 cut(s) 493
NmuCI GTSAC 2 cut(s) 219, 906
NsiI ATGCAT 2 cut(s) 13, 466
NspI RCATGY 1 cut(s) 11
OliI CACNNNNGTG 1 cut(s) 435
PctI GAATGC 1 cut(s) 11
PdmI GAANNNNTTC 1 cut(s) 733
PfeI GAWTC 1 cut(s) 528
PkrI GCNGC 7 cut(s) 134, 137, 140, 143, 146, 870, 923
Psp124BI GAGCTC 1 cut(s) 87
Psp6I CCWGG 1 cut(s) 523
PspFI CCCAGC 2 cut(s) 147, 157
PspGI CCWGG 1 cut(s) 523
PspN4I GGNNCC 3 cut(s) 163, 559, 961
PspPI GGNCC 2 cut(s) 344, 558
PstI CTGCAG 1 cut(s) 668
RsaI GTAC 2 cut(s) 617, 783
RsaNI GTAC 2 cut(s) 616, 782
RseI CAYNNNNRTG 1 cut(s) 435
SacI GAGCTC 1 cut(s) 87
SaqAI TTAA 3 cut(s) 185, 251, 941
SatI GCNGC 7 cut(s) 133, 136, 139, 142, 145, 869, 922
Sau96I GGNCC 2 cut(s) 344, 558
ScrFI CCNGG 2 cut(s) 348, 525
SduI GDGCHC 3 cut(s) 87, 164, 475
SfcI CTRYAG 2 cut(s) 664, 902
SinI GGWCC 2 cut(s) 344, 558
SmiMI CAYNNNNRTG 1 cut(s) 435
Sse9I AATT 8 cut(s) 242, 248, 270, 423, 649, 699, 878, 938
SsiI CCGC 1 cut(s) 868
SspMI CTAG 1 cut(s) 129
SstI GAGCTC 1 cut(s) 87
StyD4I CCNGG 2 cut(s) 346, 523
StyI CCWWGG 1 cut(s) 932
TaaI ACNGT 2 cut(s) 211, 906
TaqI TCGA 2 cut(s) 329, 718
TasI AATT 8 cut(s) 242, 248, 270, 423, 649, 699, 878, 938
TatI WGTACW 1 cut(s) 781
TauI GCSGC 1 cut(s) 871
TfiI GAWTC 1 cut(s) 528
Tru1I TTAA 3 cut(s) 185, 251, 941
Tru9I TTAA 3 cut(s) 185, 251, 941
TscAI CASTG 1 cut(s) 496
TseFI GTSAC 2 cut(s) 219, 906
TseI GCWGC 6 cut(s) 132, 135, 138, 141, 144, 921
Tsp45I GTSAC 2 cut(s) 219, 906
TspDTI ATGAA 4 cut(s) 254, 407, 437, 583
TspRI CASTG 1 cut(s) 496
VpaK11BI GGWCC 2 cut(s) 344, 558
XapI RAATTY 2 cut(s) 242, 423
XceI RCATGY 1 cut(s) 11
XcmI CCANNNNNNNNNTGG 2 cut(s) 57, 64
XmnI GAANNNNTTC 1 cut(s) 733
XspI CTAG 1 cut(s) 129
Zsp2I ATGCAT 2 cut(s) 13, 466
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.