Prupe.8G102300_v2.0.a1

deSI-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
OG0002011
Physical Location & Seq
Forward (+)
13376294 .. 13380317
4024 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G102300.2

Sequence Viewer

Length: 744 bp
ATGAAATCGGGACCAAAGGATGGCTGGCACTCTATTATGCCTCTTTGTTTGAGAGGCAAAGCAGCCTCACGTTTTTGCTTGTTTCCAAAGGTGAAGACAGCAGGCTACATTCCAGGGAGCGCACCTGTCTATCTGAATGTCTATGACTTGACACCAGCAAATGGCTATGTCTATTGGGCAGGCCTTGGTATCTTTCACTCCGGGGTAGAAGTTCATGGTGTAGAATATGCCTTTGGAGCGCATGAGTACTCATCAAGTGGTGTCTTTGAGGTTGAACCTCGACAATGCCCTGGCTTCAAGTTTAGAAGGTCAATTTTCATTGGCATGACATGCTTGGATCCATTCCAGGTTAGAGAGTTCATGGAGCGTCAATCTGCAATTTACAATGGTGACTCGTATCACTTGATTGTAAGGAACTGCAACCATTTCTGTGAGGATATATGTTATAAGCTCACCGGAAAACCAATACCAAAATGGGTCAACCGACTTGCAAGAATAGGTTCACTGTGCAACTGTATACTCCCGGACACCCTTAAGACGACCACTGTTCCACATGACCCCAATTTCCAAAGATGCGAAAGTGAAAGAAAGAGACTAAGAAGTGCTTTCACTTGCTTGTCATCAATGTCAATGCCTCAGAGGGAAGTATCAATGTCGTCGTTGTTTCTACATTCTCACTATAAAGGCTGCTTACCACCATGGGAGTTTAAAAGGTCTAGAAATGACTCATTGAAGGAAGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_C97

Protein Analysis

248

Amino Acids

28.08

Weight (kDa)

9.06

Isoelectric Point (pI)

47.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 447
AccB7I CCANNNNNTGG 2 cut(s) 20, 161
AccI GTMKAC 1 cut(s) 517
AclWI GGATC 2 cut(s) 332, 345
AfaI GTAC 1 cut(s) 248
AfiI CCNNNNNNNGG 2 cut(s) 20, 161
AflII CTTAAG 1 cut(s) 533
AgsI TTSAA 3 cut(s) 275, 298, 733
AjnI CCWGG 3 cut(s) 112, 289, 345
AjuI GAANNNNNNNTTGG 2 cut(s) 216, 248
AluBI AGCT 1 cut(s) 451
AluI AGCT 1 cut(s) 451
Alw26I GTCTC 1 cut(s) 586
AlwI GGATC 2 cut(s) 332, 345
AoxI GGCC 1 cut(s) 181
ApeKI GCWGC 2 cut(s) 62, 687
Asp700I GAANNNNTTC 1 cut(s) 499
AspLEI GCGC 2 cut(s) 122, 241
AspS9I GGNCC 1 cut(s) 11
AsuC2I CCSGG 2 cut(s) 202, 524
AsuHPI GGTGA 3 cut(s) 103, 401, 445
AvaII GGWCC 1 cut(s) 11
BamHI GGATCC 1 cut(s) 337
BbsI GAAGAC 1 cut(s) 101
BbvI GCAGC 2 cut(s) 74, 674
BccI CCATC 1 cut(s) 14
BciT130I CCWGG 3 cut(s) 114, 291, 347
BcnI CCSGG 2 cut(s) 202, 524
BcoDI GTCTC 1 cut(s) 586
BfaI CTAG 1 cut(s) 717
BfrI CTTAAG 1 cut(s) 533
BisI GCNGC 2 cut(s) 63, 688
BlsI GCNGC 2 cut(s) 64, 689
BmcAI AGTACT 1 cut(s) 248
Bme1390I CCNGG 5 cut(s) 114, 202, 291, 347, 524
Bme18I GGWCC 1 cut(s) 11
BmgT120I GGNCC 1 cut(s) 11
BmiI GGNNCC 2 cut(s) 12, 339
BmrFI CCNGG 5 cut(s) 114, 202, 291, 347, 524
BmsI GCATC 1 cut(s) 563
BpiI GAAGAC 1 cut(s) 101
BpuMI CCSGG 2 cut(s) 202, 524
BsaJI CCNNGG 5 cut(s) 113, 184, 201, 289, 698
BsaWI WCCGGW 1 cut(s) 455
Bsc4I CCNNNNNNNGG 2 cut(s) 20, 161
BseBI CCWGG 3 cut(s) 114, 291, 347
BseDI CCNNGG 5 cut(s) 113, 184, 201, 289, 698
BseGI GGATG 1 cut(s) 25
BseLI CCNNNNNNNGG 2 cut(s) 20, 161
BseMII CTCAG 1 cut(s) 650
BseXI GCAGC 2 cut(s) 74, 674
BshFI GGCC 1 cut(s) 183
BsiSI CCGG 3 cut(s) 201, 456, 524
BslFI GGGAC 1 cut(s) 24
BslI CCNNNNNNNGG 2 cut(s) 20, 161
BsmAI GTCTC 1 cut(s) 586
BsmFI GGGAC 1 cut(s) 24
BsnI GGCC 1 cut(s) 183
Bsp143I GATC 1 cut(s) 337
Bsp19I CCATGG 1 cut(s) 698
BspANI GGCC 1 cut(s) 183
BspCNI CTCAG 1 cut(s) 649
BspLI GGNNCC 2 cut(s) 12, 339
BspPI GGATC 2 cut(s) 332, 345
BspTI CTTAAG 1 cut(s) 533
BssECI CCNNGG 5 cut(s) 113, 184, 201, 289, 698
BssMI GATC 1 cut(s) 337
BssNAI GTATAC 1 cut(s) 518
BssT1I CCWWGG 2 cut(s) 184, 698
Bst1107I GTATAC 1 cut(s) 518
Bst2UI CCWGG 3 cut(s) 114, 291, 347
Bst4CI ACNGT 3 cut(s) 507, 515, 547
BstAFI CTTAAG 1 cut(s) 533
BstAPI GCANNNNNTGC 1 cut(s) 330
BstC8I GCNNGC 3 cut(s) 26, 103, 181
BstDEI CTNAG 2 cut(s) 596, 636
BstDSI CCRYGG 1 cut(s) 698
BstF5I GGATG 1 cut(s) 25
BstHHI GCGC 2 cut(s) 122, 241
BstKTI GATC 1 cut(s) 340
BstMAI GTCTC 1 cut(s) 586
BstMBI GATC 1 cut(s) 337
BstMWI GCNNNNNNNGC 2 cut(s) 236, 330
BstNI CCWGG 3 cut(s) 114, 291, 347
BstNSI RCATGY 1 cut(s) 333
BstSCI CCNGG 5 cut(s) 112, 200, 289, 345, 522
BstV1I GCAGC 2 cut(s) 74, 674
BstV2I GAAGAC 1 cut(s) 101
BstX2I RGATCY 1 cut(s) 337
BstYI RGATCY 1 cut(s) 337
BstZ17I GTATAC 1 cut(s) 518
BsuRI GGCC 1 cut(s) 183
BtgI CCRYGG 1 cut(s) 698
BtsCI GGATG 1 cut(s) 25
BtsIMutI CAGTG 2 cut(s) 503, 543
Cac8I GCNNGC 3 cut(s) 26, 103, 181
CfoI GCGC 2 cut(s) 122, 241
Cfr13I GGNCC 1 cut(s) 11
CseI GACGC 1 cut(s) 356
Csp6I GTAC 1 cut(s) 247
CviAII CATG 7 cut(s) 215, 242, 325, 330, 361, 554, 699
CviJI RGCY 8 cut(s) 24, 65, 105, 165, 183, 294, 451, 687
CviKI_1 RGCY 8 cut(s) 24, 65, 105, 165, 183, 294, 451, 687
CviQI GTAC 1 cut(s) 247
DdeI CTNAG 2 cut(s) 596, 636
DpnI GATC 1 cut(s) 339
DpnII GATC 1 cut(s) 337
DraI TTTAAA 1 cut(s) 709
Eco130I CCWWGG 2 cut(s) 184, 698
Eco147I AGGCCT 1 cut(s) 183
Eco47I GGWCC 1 cut(s) 11
EcoRII CCWGG 3 cut(s) 112, 289, 345
EcoT14I CCWWGG 2 cut(s) 184, 698
ErhI CCWWGG 2 cut(s) 184, 698
FaeI CATG 7 cut(s) 218, 245, 328, 333, 364, 557, 702
FalI AAGNNNNNCTT 2 cut(s) 589, 621
FaqI GGGAC 1 cut(s) 24
FatI CATG 7 cut(s) 214, 241, 324, 329, 360, 553, 698
FblI GTMKAC 1 cut(s) 517
Fnu4HI GCNGC 2 cut(s) 63, 688
FokI GGATG 1 cut(s) 32
Fsp4HI GCNGC 2 cut(s) 63, 688
FspBI CTAG 1 cut(s) 717
GlaI GCGC 2 cut(s) 121, 240
GluI GCNGC 2 cut(s) 63, 688
HaeIII GGCC 1 cut(s) 183
HapII CCGG 3 cut(s) 201, 456, 524
HgaI GACGC 1 cut(s) 356
HhaI GCGC 2 cut(s) 122, 241
Hin1II CATG 7 cut(s) 218, 245, 328, 333, 364, 557, 702
Hin6I GCGC 2 cut(s) 120, 239
HinP1I GCGC 2 cut(s) 120, 239
HincII GTYRAC 1 cut(s) 481
HindII GTYRAC 1 cut(s) 481
HinfI GANTC 2 cut(s) 392, 725
HpaII CCGG 3 cut(s) 201, 456, 524
HphI GGTGA 3 cut(s) 103, 401, 445
Hpy166II GTNNAC 3 cut(s) 481, 503, 518
Hpy188I TCNGA 2 cut(s) 135, 639
Hpy188III TCNNGA 2 cut(s) 9, 717
Hpy8I GTNNAC 3 cut(s) 481, 503, 518
Hpy99I CGWCG 1 cut(s) 661
HpyAV CCTTC 3 cut(s) 300, 727, 731
HpyCH4III ACNGT 3 cut(s) 507, 515, 547
HpyCH4IV ACGT 1 cut(s) 70
HpyCH4V TGCA 4 cut(s) 377, 420, 491, 510
HpyF10VI GCNNNNNNNGC 2 cut(s) 236, 330
HpyF3I CTNAG 2 cut(s) 596, 636
HpySE526I ACGT 1 cut(s) 70
Hsp92II CATG 7 cut(s) 218, 245, 328, 333, 364, 557, 702
HspAI GCGC 2 cut(s) 120, 239
Kzo9I GATC 1 cut(s) 337
LmnI GCTCC 3 cut(s) 117, 236, 364
Lsp1109I GCAGC 2 cut(s) 74, 674
LweI GCATC 1 cut(s) 563
MaeI CTAG 1 cut(s) 717
MaeII ACGT 1 cut(s) 70
MaeIII GTNAC 1 cut(s) 389
MalI GATC 1 cut(s) 339
MboI GATC 1 cut(s) 337
MboII GAAGA 1 cut(s) 106
MflI RGATCY 1 cut(s) 337
MluCI AATT 3 cut(s) 312, 378, 562
MlyI GAGTC 2 cut(s) 386, 719
MnlI CCTC 8 cut(s) 47, 51, 76, 262, 288, 427, 633, 645
MroXI GAANNNNTTC 1 cut(s) 499
MseI TTAA 2 cut(s) 534, 708
MslI CAYNNNNRTG 2 cut(s) 323, 429
MspCI CTTAAG 1 cut(s) 533
MspI CCGG 3 cut(s) 201, 456, 524
MspR9I CCNGG 5 cut(s) 114, 202, 291, 347, 524
MvaI CCWGG 3 cut(s) 114, 291, 347
MwoI GCNNNNNNNGC 2 cut(s) 236, 330
NciI CCSGG 2 cut(s) 202, 524
NcoI CCATGG 1 cut(s) 698
NdeII GATC 1 cut(s) 337
NlaIII CATG 7 cut(s) 218, 245, 328, 333, 364, 557, 702
NlaIV GGNNCC 2 cut(s) 12, 339
NmuCI GTSAC 1 cut(s) 389
NspI RCATGY 1 cut(s) 333
PceI AGGCCT 1 cut(s) 183
PdmI GAANNNNTTC 1 cut(s) 499
PflMI CCANNNNNTGG 2 cut(s) 20, 161
PfoI TCCNGGA 1 cut(s) 522
PkrI GCNGC 2 cut(s) 64, 689
PleI GAGTC 2 cut(s) 386, 719
PpsI GAGTC 2 cut(s) 386, 719
PsiI TTATAA 1 cut(s) 447
Psp6I CCWGG 3 cut(s) 112, 289, 345
PspGI CCWGG 3 cut(s) 112, 289, 345
PspN4I GGNNCC 2 cut(s) 12, 339
PspPI GGNCC 1 cut(s) 11
PsuI RGATCY 1 cut(s) 337
RsaI GTAC 1 cut(s) 248
RsaNI GTAC 1 cut(s) 247
RseI CAYNNNNRTG 2 cut(s) 323, 429
SaqAI TTAA 2 cut(s) 534, 708
SatI GCNGC 2 cut(s) 63, 688
Sau3AI GATC 1 cut(s) 337
Sau96I GGNCC 1 cut(s) 11
ScaI AGTACT 1 cut(s) 248
SchI GAGTC 2 cut(s) 386, 719
ScrFI CCNGG 5 cut(s) 114, 202, 291, 347, 524
SfaNI GCATC 1 cut(s) 563
SinI GGWCC 1 cut(s) 11
SmiMI CAYNNNNRTG 2 cut(s) 323, 429
SmlI CTYRAG 1 cut(s) 533
SmoI CTYRAG 1 cut(s) 533
Sse9I AATT 3 cut(s) 312, 378, 562
SseBI AGGCCT 1 cut(s) 183
SspMI CTAG 1 cut(s) 717
StuI AGGCCT 1 cut(s) 183
StyD4I CCNGG 5 cut(s) 112, 200, 289, 345, 522
StyI CCWWGG 2 cut(s) 184, 698
TaaI ACNGT 3 cut(s) 507, 515, 547
TaiI ACGT 1 cut(s) 73
TaqI TCGA 1 cut(s) 280
TasI AATT 3 cut(s) 312, 378, 562
TatI WGTACW 1 cut(s) 246
Tru1I TTAA 2 cut(s) 534, 708
Tru9I TTAA 2 cut(s) 534, 708
TscAI CASTG 2 cut(s) 510, 550
TseFI GTSAC 1 cut(s) 389
TseI GCWGC 2 cut(s) 62, 687
Tsp45I GTSAC 1 cut(s) 389
TspDTI ATGAA 4 cut(s) 17, 203, 307, 349
TspRI CASTG 2 cut(s) 510, 550
Van91I CCANNNNNTGG 2 cut(s) 20, 161
Vha464I CTTAAG 1 cut(s) 533
VpaK11BI GGWCC 1 cut(s) 11
XbaI TCTAGA 1 cut(s) 716
XceI RCATGY 1 cut(s) 333
XcmI CCANNNNNNNNNTGG 2 cut(s) 21, 471
XmiI GTMKAC 1 cut(s) 517
XmnI GAANNNNTTC 1 cut(s) 499
XspI CTAG 1 cut(s) 717
ZrmI AGTACT 1 cut(s) 248
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.