RchiOBHm_Chr6g0300641

deSI-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0002011
Physical Location & Seq
Reverse (-)
61427407 .. 61431147
3741 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ27000

Sequence Viewer

Length: 825 bp
ATGCTGCTGGGTTGCTGGGCTCCAATGGCTTCTACTGACTGGAGGCAAGCATTGACTGTTTTCTGGTCACACTATCAACAAAACATGAAATTTGAATTAAAGAAAAGATGGAAATCAATTGTCCCACTTCAGTTGAAACACAAATCAGCCACCCGTTTTTCTTTATTTCCCAAATCGAAGTCAGATTTTGGTCCGGGCAAAGCACCTGTATATCTCAATGTATATGACTTGACACCCATGAATGGCTATGTCTATTGGGCAGGCTTTGGAATTTTTCACTCTGGTGTTGAAGTTCATGGCGTTGAGTATGCATTTGGAGCACATGACTACCCTACCAGTGGTGTTTTTGAGGTTGAACCTCGGCAATGCCCAGGATTCAAGTTCAGGAAATCTATATTTATTGGGACCACAAGCTTAGACCCTATTCAGGTTAGAGAGTTCATGGAGCGCCAGTCATTGAGGTACAATGGTGATACATATCACCTGATTGTCAAGAATTGCAACCATTTCTGCAGAGATATCTGCTACAAGCTAACTGGGAAATCAATTCCAAAGTGGGTAAATCGACTGGCAAGAATAGGTTCAATATGCAACTGCATACTTCCTGAAGCGCTAAAGATTTCTGCTGTACAACATGACCCTAACAACCAACCATATGATAGTGAGAAGAGGAGTTTGAGAAGTGCCTTCAGTTGCCTGTCTTCTATCTCAATGCGGCAGAAGCAATTGTCATCATCTTCATTGTTTCTACAGTCACCCTTGAAAGGCTGCTTGCCACCATGGGAATTAAGAAGGTCAAACAATGGTTCCTTGAAGGAAAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_C97

Protein Analysis

274

Amino Acids

31.46

Weight (kDa)

9.6

Isoelectric Point (pI)

43.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_C97 PF05903 69 - 204 8e-50 PPPDE putative peptidase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 715
AcsI RAATTY 2 cut(s) 89, 270
AcuI CTGAAG 3 cut(s) 113, 627, 673
AfaI GTAC 2 cut(s) 464, 630
AfeI AGCGCT 1 cut(s) 612
AfiI CCNNNNNNNGG 4 cut(s) 242, 338, 427, 764
AgsI TTSAA 8 cut(s) 95, 136, 290, 356, 379, 585, 763, 814
AjnI CCWGG 1 cut(s) 370
AleI CACNNNNGTG 1 cut(s) 282
AluBI AGCT 2 cut(s) 414, 532
AluI AGCT 2 cut(s) 414, 532
Alw21I GWGCWC 1 cut(s) 322
Aor51HI AGCGCT 1 cut(s) 612
ApeKI GCWGC 2 cut(s) 4, 768
ApoI RAATTY 2 cut(s) 89, 270
Asp700I GAANNNNTTC 1 cut(s) 580
AspLEI GCGC 2 cut(s) 450, 613
AspS9I GGNCC 2 cut(s) 191, 405
AsuC2I CCSGG 1 cut(s) 195
AsuHPI GGTGA 3 cut(s) 473, 482, 747
AvaII GGWCC 2 cut(s) 191, 405
BaeI ACNNNNGTAYC 2 cut(s) 454, 487
BanII GRGCYC 1 cut(s) 22
BbsI GAAGAC 1 cut(s) 693
Bbv12I GWGCWC 1 cut(s) 322
BbvI GCAGC 1 cut(s) 755
BccI CCATC 1 cut(s) 102
BciT130I CCWGG 1 cut(s) 372
BcnI CCSGG 1 cut(s) 195
BfmI CTRYAG 2 cut(s) 511, 749
BfoI RGCGCY 2 cut(s) 451, 614
BisI GCNGC 3 cut(s) 5, 716, 769
BlsI GCNGC 3 cut(s) 6, 717, 770
Bme1390I CCNGG 2 cut(s) 195, 372
Bme18I GGWCC 2 cut(s) 191, 405
BmgT120I GGNCC 2 cut(s) 191, 405
BmiI GGNNCC 3 cut(s) 21, 406, 808
BmrFI CCNGG 2 cut(s) 195, 372
BmrI ACTGGG 1 cut(s) 546
BmuI ACTGGG 1 cut(s) 546
BpiI GAAGAC 1 cut(s) 693
BpmI CTGGAG 1 cut(s) 61
BpuMI CCSGG 1 cut(s) 195
BsaBI GATNNNNATC 2 cut(s) 112, 477
BsaJI CCNNGG 3 cut(s) 359, 370, 779
BsaXI ACNNNNNCTCC 2 cut(s) 437, 467
Bsc4I CCNNNNNNNGG 4 cut(s) 242, 338, 427, 764
Bse1I ACTGG 5 cut(s) 44, 336, 451, 541, 573
Bse3DI GCAATG 1 cut(s) 371
Bse8I GATNNNNATC 2 cut(s) 112, 477
BseBI CCWGG 1 cut(s) 372
BseDI CCNNGG 3 cut(s) 359, 370, 779
BseJI GATNNNNATC 2 cut(s) 112, 477
BseLI CCNNNNNNNGG 4 cut(s) 242, 338, 427, 764
BseMI GCAATG 1 cut(s) 371
BseNI ACTGG 5 cut(s) 44, 336, 451, 541, 573
BseRI GAGGAG 1 cut(s) 685
BseXI GCAGC 1 cut(s) 755
BseYI CCCAGC 2 cut(s) 7, 15
BsiHKAI GWGCWC 1 cut(s) 322
BsiSI CCGG 1 cut(s) 194
BslFI GGGAC 2 cut(s) 107, 418
BslI CCNNNNNNNGG 4 cut(s) 242, 338, 427, 764
BsmFI GGGAC 2 cut(s) 107, 418
Bsp1286I GDGCHC 2 cut(s) 22, 322
Bsp1407I TGTACA 1 cut(s) 628
Bsp19I CCATGG 1 cut(s) 779
BspACI CCGC 1 cut(s) 715
BspLI GGNNCC 3 cut(s) 21, 406, 808
BspMAI CTGCAG 1 cut(s) 515
BsrDI GCAATG 1 cut(s) 371
BsrGI TGTACA 1 cut(s) 628
BsrI ACTGG 5 cut(s) 44, 336, 451, 541, 573
BssECI CCNNGG 3 cut(s) 359, 370, 779
BssT1I CCWWGG 1 cut(s) 779
Bst2UI CCWGG 1 cut(s) 372
Bst4CI ACNGT 2 cut(s) 58, 753
Bst6I CTCTTC 1 cut(s) 662
BstAUI TGTACA 1 cut(s) 628
BstC8I GCNNGC 3 cut(s) 48, 262, 773
BstDEI CTNAG 1 cut(s) 415
BstDSI CCRYGG 1 cut(s) 779
BstH2I RGCGCY 2 cut(s) 451, 614
BstHHI GCGC 2 cut(s) 450, 613
BstMWI GCNNNNNNNGC 3 cut(s) 26, 317, 721
BstNI CCWGG 1 cut(s) 372
BstSCI CCNGG 2 cut(s) 193, 370
BstSFI CTRYAG 2 cut(s) 511, 749
BstV1I GCAGC 1 cut(s) 755
BstV2I GAAGAC 1 cut(s) 693
BtgI CCRYGG 1 cut(s) 779
BtsIMutI CAGTG 1 cut(s) 343
Cac8I GCNNGC 3 cut(s) 48, 262, 773
CfoI GCGC 2 cut(s) 450, 613
Cfr13I GGNCC 2 cut(s) 191, 405
Csp6I GTAC 2 cut(s) 463, 629
CspCI CAANNNNNGTGG 2 cut(s) 114, 149
CviAII CATG 7 cut(s) 85, 238, 296, 323, 442, 635, 780
CviJI RGCY 8 cut(s) 20, 29, 149, 246, 264, 414, 532, 768
CviKI_1 RGCY 8 cut(s) 20, 29, 149, 246, 264, 414, 532, 768
CviQI GTAC 2 cut(s) 463, 629
DdeI CTNAG 1 cut(s) 415
Eam1104I CTCTTC 1 cut(s) 662
EarI CTCTTC 1 cut(s) 662
Eco130I CCWWGG 1 cut(s) 779
Eco24I GRGCYC 1 cut(s) 22
Eco32I GATATC 1 cut(s) 520
Eco47I GGWCC 2 cut(s) 191, 405
Eco47III AGCGCT 1 cut(s) 612
Eco57I CTGAAG 3 cut(s) 113, 627, 673
EcoRII CCWGG 1 cut(s) 370
EcoRV GATATC 1 cut(s) 520
EcoT14I CCWWGG 1 cut(s) 779
EcoT22I ATGCAT 1 cut(s) 313
EcoT38I GRGCYC 1 cut(s) 22
ErhI CCWWGG 1 cut(s) 779
FaeI CATG 7 cut(s) 88, 241, 299, 326, 445, 638, 783
FaqI GGGAC 2 cut(s) 107, 418
FatI CATG 7 cut(s) 84, 237, 295, 322, 441, 634, 779
FauNDI CATATG 1 cut(s) 655
Fnu4HI GCNGC 3 cut(s) 5, 716, 769
FriOI GRGCYC 1 cut(s) 22
Fsp4HI GCNGC 3 cut(s) 5, 716, 769
GlaI GCGC 2 cut(s) 449, 612
GluI GCNGC 3 cut(s) 5, 716, 769
GsaI CCCAGC 2 cut(s) 11, 19
GsuI CTGGAG 1 cut(s) 61
HaeII RGCGCY 2 cut(s) 451, 614
HapII CCGG 1 cut(s) 194
HhaI GCGC 2 cut(s) 450, 613
Hin1II CATG 7 cut(s) 88, 241, 299, 326, 445, 638, 783
Hin6I GCGC 2 cut(s) 448, 611
HinP1I GCGC 2 cut(s) 448, 611
HindIII AAGCTT 1 cut(s) 412
HinfI GANTC 1 cut(s) 375
HpaII CCGG 1 cut(s) 194
HphI GGTGA 3 cut(s) 473, 482, 747
Hpy188I TCNGA 1 cut(s) 184
Hpy188III TCNNGA 3 cut(s) 385, 493, 605
HpyAV CCTTC 3 cut(s) 697, 786, 808
HpyCH4III ACNGT 2 cut(s) 58, 753
HpyCH4V TGCA 5 cut(s) 311, 501, 513, 591, 597
HpyF10VI GCNNNNNNNGC 3 cut(s) 26, 317, 721
HpyF3I CTNAG 1 cut(s) 415
Hsp92II CATG 7 cut(s) 88, 241, 299, 326, 445, 638, 783
HspAI GCGC 2 cut(s) 448, 611
LmnI GCTCC 3 cut(s) 25, 317, 445
Lsp1109I GCAGC 1 cut(s) 755
MaeIII GTNAC 2 cut(s) 66, 753
MboII GAAGA 3 cut(s) 679, 693, 729
MfeI CAATTG 2 cut(s) 117, 725
MhlI GDGCHC 2 cut(s) 22, 322
MluCI AATT 8 cut(s) 89, 95, 117, 270, 496, 546, 725, 785
MnlI CCTC 5 cut(s) 36, 343, 369, 453, 663
Mph1103I ATGCAT 1 cut(s) 313
MroXI GAANNNNTTC 1 cut(s) 580
MseI TTAA 2 cut(s) 98, 788
MslI CAYNNNNRTG 1 cut(s) 282
MspI CCGG 1 cut(s) 194
MspR9I CCNGG 2 cut(s) 195, 372
MunI CAATTG 2 cut(s) 117, 725
MvaI CCWGG 1 cut(s) 372
MwoI GCNNNNNNNGC 3 cut(s) 26, 317, 721
NciI CCSGG 1 cut(s) 195
NcoI CCATGG 1 cut(s) 779
NdeI CATATG 1 cut(s) 655
NlaIII CATG 7 cut(s) 88, 241, 299, 326, 445, 638, 783
NlaIV GGNNCC 3 cut(s) 21, 406, 808
NmeAIII GCCGAG 1 cut(s) 340
NmuCI GTSAC 2 cut(s) 66, 753
NsiI ATGCAT 1 cut(s) 313
OliI CACNNNNGTG 1 cut(s) 282
PdmI GAANNNNTTC 1 cut(s) 580
PfeI GAWTC 1 cut(s) 375
PkrI GCNGC 3 cut(s) 6, 717, 770
Psp6I CCWGG 1 cut(s) 370
PspFI CCCAGC 2 cut(s) 7, 15
PspGI CCWGG 1 cut(s) 370
PspN4I GGNNCC 3 cut(s) 21, 406, 808
PspPI GGNCC 2 cut(s) 191, 405
PstI CTGCAG 1 cut(s) 515
RsaI GTAC 2 cut(s) 464, 630
RsaNI GTAC 2 cut(s) 463, 629
RseI CAYNNNNRTG 1 cut(s) 282
SaqAI TTAA 2 cut(s) 98, 788
SatI GCNGC 3 cut(s) 5, 716, 769
Sau96I GGNCC 2 cut(s) 191, 405
ScrFI CCNGG 2 cut(s) 195, 372
SduI GDGCHC 2 cut(s) 22, 322
SfcI CTRYAG 2 cut(s) 511, 749
SinI GGWCC 2 cut(s) 191, 405
SmiMI CAYNNNNRTG 1 cut(s) 282
Sse9I AATT 8 cut(s) 89, 95, 117, 270, 496, 546, 725, 785
SsiI CCGC 1 cut(s) 715
StyD4I CCNGG 2 cut(s) 193, 370
StyI CCWWGG 1 cut(s) 779
TaaI ACNGT 2 cut(s) 58, 753
TaqI TCGA 2 cut(s) 176, 565
TasI AATT 8 cut(s) 89, 95, 117, 270, 496, 546, 725, 785
TatI WGTACW 1 cut(s) 628
TauI GCSGC 1 cut(s) 718
TfiI GAWTC 1 cut(s) 375
Tru1I TTAA 2 cut(s) 98, 788
Tru9I TTAA 2 cut(s) 98, 788
TscAI CASTG 1 cut(s) 343
TseFI GTSAC 2 cut(s) 66, 753
TseI GCWGC 2 cut(s) 4, 768
Tsp45I GTSAC 2 cut(s) 66, 753
TspDTI ATGAA 5 cut(s) 101, 254, 284, 430, 729
TspRI CASTG 1 cut(s) 343
VpaK11BI GGWCC 2 cut(s) 191, 405
XapI RAATTY 2 cut(s) 89, 270
XmnI GAANNNNTTC 1 cut(s) 580
Zsp2I ATGCAT 1 cut(s) 313
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.