Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0002011

Physical Location & Seq

Genomic Coordinates Forward (+)

34392194 .. 34396534

Gene Structure 4341 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G382300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 744 bp

ATGAAATTTGAATTGAAGAAAAGATGGAGAGCCATTGCCCCACATCAATTGAAAAACAAATCAGCTGGCCGTTTTTGTTTATTTCCCAAATCAAAGTCAGATCGCTCTGATCCGAGACAAGCACCAGTTTATCTCAATGTATATGATTTAACACCCATGAATGGCTACGTCTATTGGGCAGGCCTTGGAATTTTTCACTCTGGTGTTGAAGTTCATGGTGTAGAATATGCATTTGGAGCACACGACTACCCTACCAGTGGTGTTTTTGAGGTTGAACCTCGCCAATGCCCAGGATTCAAGTTCAGGAAGTCTATATTTATTGGGACCACATCCTTGGACCCTACTCAGGTTAGGGAGTTTATGGAGCGCCAGTCTTTGAGCTACAATGGTGATACATATCACCTGATTGTCAAGAACTGCAACCATTTCTGCAGGGATATCTGTCACAAGTTAACCGGAAAATCGATTCCCAAATGGGTAAATCGACTGGCAAAAATAGGTTCAATATGCAACTGCGTACTTCCTGAAGCCCTAAAGATTTCTTCTGTGCAACACGACCCGAACTGCCAGCCATACGACAGCGAGAAGAGGAGTTTGAGAAGTACGTTCAGTTGCCTGTCTTCTATTTCAATGCGGCAGAAGCAATTGTCATCATCATCGTTATTTCTACAGTCACCCCTAAAAGGCTGCTTACCGCCATGGGAATTGAGAAGGTCGAACAATGGTTCCTTGAAGGAAAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_C97

Protein Analysis

248

Amino Acids

28.2

Weight (kDa)

9.54

Isoelectric Point (pI)

46.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002011)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G47740 AT1G47740 AT1G47740
fragaria_vesca	FvH4_2g08250 FvH4_2g08250 FvH4_2g08250 FvH4_2g08250 FvH4_2g08250 FvH4_2g40100 FvH4_2g40100 FvH4_2g40100 FvH4_2g40100
malus_domestica	MD05G1070300.v1.1 MD08G1032400.v1.1 MD10G1081000.v1.1 MD15G1029100.v1.1
prunus_persica	Prupe.1G382300_v2.0.a1 Prupe.1G382300_v2.0.a1 Prupe.8G102300_v2.0.a1 Prupe.8G102300_v2.0.a1
pyrus_communis	pycom05g06050 pycom08g02570 pycom10g06410 pycom15g02580
rosa_chinensis	RchiOBHm_Chr6g0263121 RchiOBHm_Chr6g0300641
rosa_laevigata	RLG00000014372
rosa_multiflora	Rmu_sc0002146.1_g000001 Rmu_sc0010560.1_g000008 Rmu_sc0028840.1_g000001
rosa_roxburghii	Rroxscaffold_7G00167550
rosa_rugosa	Rorug06G0003700 Rorug06G0003700 Rorug06G0298200
rosa_samantha	Rh6AG122700 Rh6AG410700 Rh6BG117700 Rh6BG417900 Rh6CG116000 Rh6CG425400 Rh6DG104500 Rh6DG410800
rosa_wichuraiana	Rw0G002210 Rw6G010540 Rw6G035930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	634, 695
AclWI	GGATC	1 cut(s)	104
AcoI	YGGCCR	1 cut(s)	67
AcsI	RAATTY	2 cut(s)	5, 189
AcuI	CTGAAG	1 cut(s)	546
AfaI	GTAC	2 cut(s)	519, 604
AfiI	CCNNNNNNNGG	4 cut(s)	161, 257, 346, 683
AgsI	TTSAA	9 cut(s)	11, 16, 52, 209, 275, 298, 504, 630, 733
AjnI	CCWGG	1 cut(s)	289
AjuI	GAANNNNNNNTTGG	2 cut(s)	216, 248
AleI	CACNNNNGTG	1 cut(s)	201
AloI	GAACNNNNNNTCC	2 cut(s)	710, 742
AluBI	AGCT	2 cut(s)	65, 381
AluI	AGCT	2 cut(s)	65, 381
Alw21I	GWGCWC	1 cut(s)	241
Alw26I	GTCTC	1 cut(s)	109
AlwI	GGATC	1 cut(s)	104
AoxI	GGCC	2 cut(s)	67, 181
ApeKI	GCWGC	1 cut(s)	687
ApoI	RAATTY	2 cut(s)	5, 189
AspLEI	GCGC	1 cut(s)	369
AspS9I	GGNCC	2 cut(s)	324, 337
AsuHPI	GGTGA	3 cut(s)	392, 401, 666
AvaII	GGWCC	2 cut(s)	324, 337
BbsI	GAAGAC	1 cut(s)	612
Bbv12I	GWGCWC	1 cut(s)	241
BbvI	GCAGC	1 cut(s)	674
BccI	CCATC	1 cut(s)	18
BceAI	ACGGC	1 cut(s)	54
BciT130I	CCWGG	1 cut(s)	291
BcoDI	GTCTC	1 cut(s)	109
BfmI	CTRYAG	2 cut(s)	430, 668
BfoI	RGCGCY	1 cut(s)	370
BisI	GCNGC	2 cut(s)	635, 688
BlsI	GCNGC	2 cut(s)	636, 689
Bme1390I	CCNGG	1 cut(s)	291
Bme18I	GGWCC	2 cut(s)	324, 337
BmgT120I	GGNCC	2 cut(s)	324, 337
BmiI	GGNNCC	3 cut(s)	325, 339, 727
BmrFI	CCNGG	1 cut(s)	291
BpiI	GAAGAC	1 cut(s)	612
Bsa29I	ATCGAT	1 cut(s)	464
BsaBI	GATNNNNATC	1 cut(s)	396
BsaJI	CCNNGG	4 cut(s)	184, 289, 333, 698
BsaWI	WCCGGW	1 cut(s)	455
BsaXI	ACNNNNNCTCC	2 cut(s)	356, 386
Bsc4I	CCNNNNNNNGG	4 cut(s)	161, 257, 346, 683
Bse1I	ACTGG	4 cut(s)	125, 255, 370, 492
Bse3DI	GCAATG	1 cut(s)	33
Bse8I	GATNNNNATC	1 cut(s)	396
BseBI	CCWGG	1 cut(s)	291
BseCI	ATCGAT	1 cut(s)	464
BseDI	CCNNGG	4 cut(s)	184, 289, 333, 698
BseGI	GGATG	1 cut(s)	329
BseJI	GATNNNNATC	1 cut(s)	396
BseLI	CCNNNNNNNGG	4 cut(s)	161, 257, 346, 683
BseMI	GCAATG	1 cut(s)	33
BseMII	CTCAG	1 cut(s)	359
BseNI	ACTGG	4 cut(s)	125, 255, 370, 492
BseRI	GAGGAG	1 cut(s)	604
BseXI	GCAGC	1 cut(s)	674
BshFI	GGCC	2 cut(s)	69, 183
BshVI	ATCGAT	1 cut(s)	464
BsiHKAI	GWGCWC	1 cut(s)	241
BsiSI	CCGG	1 cut(s)	456
BslFI	GGGAC	1 cut(s)	337
BslI	CCNNNNNNNGG	4 cut(s)	161, 257, 346, 683
BsmAI	GTCTC	1 cut(s)	109
BsmFI	GGGAC	1 cut(s)	337
BsnI	GGCC	2 cut(s)	69, 183
Bsp1286I	GDGCHC	1 cut(s)	241
Bsp143I	GATC	2 cut(s)	100, 109
Bsp19I	CCATGG	1 cut(s)	698
BspACI	CCGC	2 cut(s)	634, 695
BspANI	GGCC	2 cut(s)	69, 183
BspCNI	CTCAG	1 cut(s)	358
BspDI	ATCGAT	1 cut(s)	464
BspLI	GGNNCC	3 cut(s)	325, 339, 727
BspMAI	CTGCAG	1 cut(s)	434
BspPI	GGATC	1 cut(s)	104
BsrDI	GCAATG	1 cut(s)	33
BsrI	ACTGG	4 cut(s)	125, 255, 370, 492
BssECI	CCNNGG	4 cut(s)	184, 289, 333, 698
BssMI	GATC	2 cut(s)	100, 109
BssT1I	CCWWGG	3 cut(s)	184, 333, 698
Bst2UI	CCWGG	1 cut(s)	291
Bst4CI	ACNGT	1 cut(s)	672
Bst6I	CTCTTC	1 cut(s)	581
BstC8I	GCNNGC	3 cut(s)	67, 181, 569
BstDEI	CTNAG	1 cut(s)	345
BstDSI	CCRYGG	1 cut(s)	698
BstF5I	GGATG	1 cut(s)	329
BstH2I	RGCGCY	1 cut(s)	370
BstHHI	GCGC	1 cut(s)	369
BstKTI	GATC	2 cut(s)	103, 112
BstMAI	GTCTC	1 cut(s)	109
BstMBI	GATC	2 cut(s)	100, 109
BstMWI	GCNNNNNNNGC	2 cut(s)	236, 640
BstNI	CCWGG	1 cut(s)	291
BstSCI	CCNGG	1 cut(s)	289
BstSFI	CTRYAG	2 cut(s)	430, 668
BstV1I	GCAGC	1 cut(s)	674
BstV2I	GAAGAC	1 cut(s)	612
BstXI	CCANNNNNNTGG	1 cut(s)	334
Bsu15I	ATCGAT	1 cut(s)	464
BsuRI	GGCC	2 cut(s)	69, 183
BsuTUI	ATCGAT	1 cut(s)	464
BtgI	CCRYGG	1 cut(s)	698
BtsCI	GGATG	1 cut(s)	329
BtsIMutI	CAGTG	1 cut(s)	262
Cac8I	GCNNGC	3 cut(s)	67, 181, 569
CfoI	GCGC	1 cut(s)	369
Cfr13I	GGNCC	2 cut(s)	324, 337
ClaI	ATCGAT	1 cut(s)	464
Csp6I	GTAC	2 cut(s)	518, 603
CspCI	CAANNNNNGTGG	2 cut(s)	30, 65
CviAII	CATG	3 cut(s)	157, 215, 699
CviJI	RGCY	9 cut(s)	32, 65, 69, 165, 183, 381, 530, 571, 687
CviKI_1	RGCY	9 cut(s)	32, 65, 69, 165, 183, 381, 530, 571, 687
CviQI	GTAC	2 cut(s)	518, 603
DdeI	CTNAG	1 cut(s)	345
DpnI	GATC	2 cut(s)	102, 111
DpnII	GATC	2 cut(s)	100, 109
EaeI	YGGCCR	1 cut(s)	67
Eam1104I	CTCTTC	1 cut(s)	581
EarI	CTCTTC	1 cut(s)	581
Eco130I	CCWWGG	3 cut(s)	184, 333, 698
Eco147I	AGGCCT	1 cut(s)	183
Eco32I	GATATC	1 cut(s)	439
Eco47I	GGWCC	2 cut(s)	324, 337
Eco57I	CTGAAG	1 cut(s)	546
EcoRII	CCWGG	1 cut(s)	289
EcoRV	GATATC	1 cut(s)	439
EcoT14I	CCWWGG	3 cut(s)	184, 333, 698
EcoT22I	ATGCAT	1 cut(s)	232
ErhI	CCWWGG	3 cut(s)	184, 333, 698
FaeI	CATG	3 cut(s)	160, 218, 702
FaqI	GGGAC	1 cut(s)	337
FatI	CATG	3 cut(s)	156, 214, 698
Fnu4HI	GCNGC	2 cut(s)	635, 688
FokI	GGATG	1 cut(s)	316
Fsp4HI	GCNGC	2 cut(s)	635, 688
GlaI	GCGC	1 cut(s)	368
GluI	GCNGC	2 cut(s)	635, 688
HaeII	RGCGCY	1 cut(s)	370
HaeIII	GGCC	2 cut(s)	69, 183
HapII	CCGG	1 cut(s)	456
HhaI	GCGC	1 cut(s)	369
Hin1II	CATG	3 cut(s)	160, 218, 702
Hin6I	GCGC	1 cut(s)	367
HinP1I	GCGC	1 cut(s)	367
HincII	GTYRAC	1 cut(s)	453
HindII	GTYRAC	1 cut(s)	453
HinfI	GANTC	2 cut(s)	294, 466
HpaI	GTTAAC	1 cut(s)	453
HpaII	CCGG	1 cut(s)	456
HphI	GGTGA	3 cut(s)	392, 401, 666
Hpy166II	GTNNAC	1 cut(s)	453
Hpy188I	TCNGA	3 cut(s)	100, 109, 114
Hpy188III	TCNNGA	3 cut(s)	304, 412, 524
Hpy8I	GTNNAC	1 cut(s)	453
HpyAV	CCTTC	2 cut(s)	705, 727
HpyCH4III	ACNGT	1 cut(s)	672
HpyCH4IV	ACGT	2 cut(s)	168, 605
HpyCH4V	TGCA	5 cut(s)	230, 420, 432, 510, 550
HpyF10VI	GCNNNNNNNGC	2 cut(s)	236, 640
HpyF3I	CTNAG	1 cut(s)	345
HpySE526I	ACGT	2 cut(s)	168, 605
Hsp92II	CATG	3 cut(s)	160, 218, 702
HspAI	GCGC	1 cut(s)	367
KspAI	GTTAAC	1 cut(s)	453
Kzo9I	GATC	2 cut(s)	100, 109
LmnI	GCTCC	2 cut(s)	236, 364
Lsp1109I	GCAGC	1 cut(s)	674
MaeII	ACGT	2 cut(s)	168, 605
MaeIII	GTNAC	2 cut(s)	443, 672
MalI	GATC	2 cut(s)	102, 111
MboI	GATC	2 cut(s)	100, 109
MboII	GAAGA	4 cut(s)	28, 534, 598, 612
MfeI	CAATTG	2 cut(s)	47, 644
MhlI	GDGCHC	1 cut(s)	241
MluCI	AATT	6 cut(s)	5, 11, 47, 189, 644, 704
MnlI	CCTC	3 cut(s)	262, 288, 582
Mph1103I	ATGCAT	1 cut(s)	232
MseI	TTAA	2 cut(s)	149, 452
MslI	CAYNNNNRTG	1 cut(s)	201
MspA1I	CMGCKG	1 cut(s)	65
MspI	CCGG	1 cut(s)	456
MspR9I	CCNGG	1 cut(s)	291
MunI	CAATTG	2 cut(s)	47, 644
MvaI	CCWGG	1 cut(s)	291
MwoI	GCNNNNNNNGC	2 cut(s)	236, 640
NcoI	CCATGG	1 cut(s)	698
NdeII	GATC	2 cut(s)	100, 109
NlaIII	CATG	3 cut(s)	160, 218, 702
NlaIV	GGNNCC	3 cut(s)	325, 339, 727
NmuCI	GTSAC	2 cut(s)	443, 672
NsiI	ATGCAT	1 cut(s)	232
OliI	CACNNNNGTG	1 cut(s)	201
PceI	AGGCCT	1 cut(s)	183
PfeI	GAWTC	2 cut(s)	294, 466
PkrI	GCNGC	2 cut(s)	636, 689
Psp6I	CCWGG	1 cut(s)	289
PspGI	CCWGG	1 cut(s)	289
PspN4I	GGNNCC	3 cut(s)	325, 339, 727
PspPI	GGNCC	2 cut(s)	324, 337
PstI	CTGCAG	1 cut(s)	434
PvuII	CAGCTG	1 cut(s)	65
RsaI	GTAC	2 cut(s)	519, 604
RsaNI	GTAC	2 cut(s)	518, 603
RseI	CAYNNNNRTG	1 cut(s)	201
SaqAI	TTAA	2 cut(s)	149, 452
SatI	GCNGC	2 cut(s)	635, 688
Sau3AI	GATC	2 cut(s)	100, 109
Sau96I	GGNCC	2 cut(s)	324, 337
ScrFI	CCNGG	1 cut(s)	291
SduI	GDGCHC	1 cut(s)	241
SfcI	CTRYAG	2 cut(s)	430, 668
SinI	GGWCC	2 cut(s)	324, 337
SmiMI	CAYNNNNRTG	1 cut(s)	201
Sse9I	AATT	6 cut(s)	5, 11, 47, 189, 644, 704
SseBI	AGGCCT	1 cut(s)	183
SsiI	CCGC	2 cut(s)	634, 695
StuI	AGGCCT	1 cut(s)	183
StyD4I	CCNGG	1 cut(s)	289
StyI	CCWWGG	3 cut(s)	184, 333, 698
TaaI	ACNGT	1 cut(s)	672
TaiI	ACGT	2 cut(s)	171, 608
TaqI	TCGA	3 cut(s)	464, 484, 716
TasI	AATT	6 cut(s)	5, 11, 47, 189, 644, 704
TauI	GCSGC	1 cut(s)	637
TfiI	GAWTC	2 cut(s)	294, 466
Tru1I	TTAA	2 cut(s)	149, 452
Tru9I	TTAA	2 cut(s)	149, 452
TscAI	CASTG	1 cut(s)	262
TseFI	GTSAC	2 cut(s)	443, 672
TseI	GCWGC	1 cut(s)	687
Tsp45I	GTSAC	2 cut(s)	443, 672
TspDTI	ATGAA	3 cut(s)	17, 173, 203
TspRI	CASTG	1 cut(s)	262
VpaK11BI	GGWCC	2 cut(s)	324, 337
XapI	RAATTY	2 cut(s)	5, 189
Zsp2I	ATGCAT	1 cut(s)	232

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.