AT1G47740

deSI-like protein At4g17486

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0002011
Physical Location & Seq
Forward (+)
17566511 .. 17569297
2787 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G47740.1

Sequence Viewer

Length: 840 bp
ATGTTGAACGGAAAAGAAGAGCCTAAGCAGAAGAAAGGTTGGTCAGAGTCGCTGCTAGAATTTCGGTCAGGGTTTGGGGAAAAGATGAAAGTTGTGTCGAAGAAACGTTGGAAATCTCTTGGTCCTCTTCATCTGAAAAGCAAATCAGTTGCACGGTTTTGCTTCTTTTCGAAGTTGAAGTCAAACAACCATGGTCCAGGCCGTGCACCAGTGTATCTCAATGTTTATGACTTGACTCCTATTAACGGATATATCTATTGGGCAGGCCTTGGTATATTTCACTCTGGTGTAGAAGTTCATGGAGTAGAGTATGCTTTTGGTGCCCATGATTATGCAACGAGTGGTGTTTTTGAGGTTGAACCAAGGCAATGCCCGGGCTTCAAGTTCAAGAAATCGATATTCATTGGAACCACGAATTTAAACCCAACACAAGTGAGAGAGTTTATGGAAGACATGGCTTGCAGTTACTACGGGAATATGTATCACTTGATTGTTAAGAACTGCAACCATTTCTGCCAGGACGTTTGCTACAAGCTTACCGGGAAAAAGATCCCAAAATGGGTGAATCGGCTTGCACAAATAGGTTCTGTGTGCAGCTGCATACTTCCCGAGTCCCTCAAGATAACAGCGGTCTGCCACGATCCAGACGGGCAAATCCCGGAGGAAGAAAACGAAAAGAGAAGTCTTAGAAGCTCATTCAGCTGTTTATCATCCATCTCCATGAGACAAAAACAGCTTTCAACATCATCATTGTTCCTACAATCACCTCTCAGAGGCTGCTTACCTCCTTGGCAACTCAAACGCTCAAAATCTAACAGCAGCTCCTTGAAAGAAAGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_C97

Protein Analysis

279

Amino Acids

31.61

Weight (kDa)

9.44

Isoelectric Point (pI)

45.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_C97 PF05903 70 - 204 8.3e-50 PPPDE putative peptidase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 320
AciI CCGC 1 cut(s) 629
AclI AACGTT 1 cut(s) 106
AclWI GGATC 2 cut(s) 544, 635
AcsI RAATTY 2 cut(s) 59, 415
AfiI CCNNNNNNNGG 3 cut(s) 245, 559, 773
AgsI TTSAA 7 cut(s) 7, 178, 359, 382, 388, 741, 829
AjnI CCWGG 2 cut(s) 196, 516
AleI CACNNNNGTG 1 cut(s) 285
AluBI AGCT 6 cut(s) 535, 597, 693, 702, 736, 822
AluI AGCT 6 cut(s) 535, 597, 693, 702, 736, 822
Alw21I GWGCWC 1 cut(s) 208
Alw26I GTCTC 1 cut(s) 718
Alw44I GTGCAC 1 cut(s) 204
AlwI GGATC 2 cut(s) 544, 635
AlwNI CAGNNNCTG 1 cut(s) 777
Ama87I CYCGRG 2 cut(s) 373, 608
AoxI GGCC 2 cut(s) 199, 265
ApaLI GTGCAC 1 cut(s) 204
ApeKI GCWGC 5 cut(s) 52, 594, 597, 777, 819
ApoI RAATTY 2 cut(s) 59, 415
ArsI GACNNNNNNTTYG 2 cut(s) 164, 196
AspS9I GGNCC 2 cut(s) 122, 194
AsuC2I CCSGG 4 cut(s) 374, 375, 541, 659
AsuHPI GGTGA 2 cut(s) 574, 756
AsuII TTCGAA 1 cut(s) 170
AvaI CYCGRG 2 cut(s) 373, 608
AvaII GGWCC 2 cut(s) 122, 194
BaeGI GKGCMC 2 cut(s) 208, 325
BaeI ACNNNNGTAYC 2 cut(s) 197, 230
BanI GGYRCC 1 cut(s) 320
BbsI GAAGAC 1 cut(s) 456
Bbv12I GWGCWC 1 cut(s) 208
BbvI GCAGC 5 cut(s) 39, 584, 606, 764, 831
BccI CCATC 1 cut(s) 722
BceAI ACGGC 1 cut(s) 186
BciT130I CCWGG 2 cut(s) 198, 518
BcnI CCSGG 4 cut(s) 374, 375, 541, 659
BcoDI GTCTC 1 cut(s) 718
BfaI CTAG 1 cut(s) 56
BisI GCNGC 5 cut(s) 53, 595, 598, 778, 820
BlsI GCNGC 5 cut(s) 54, 596, 599, 779, 821
Bme1390I CCNGG 6 cut(s) 198, 374, 375, 518, 541, 659
Bme18I GGWCC 2 cut(s) 122, 194
BmeT110I CYCGRG 2 cut(s) 373, 608
BmgT120I GGNCC 2 cut(s) 122, 194
BmiI GGNNCC 2 cut(s) 322, 409
BmrFI CCNGG 6 cut(s) 198, 374, 375, 518, 541, 659
BpiI GAAGAC 1 cut(s) 456
Bpu10I CCTNAGC 1 cut(s) 24
Bpu14I TTCGAA 1 cut(s) 170
BpuEI CTTGAG 1 cut(s) 602
BpuMI CCSGG 4 cut(s) 374, 375, 541, 659
Bsa29I ATCGAT 1 cut(s) 395
BsaJI CCNNGG 5 cut(s) 190, 268, 362, 373, 788
BsaXI ACNNNNNCTCC 2 cut(s) 806, 836
Bsc4I CCNNNNNNNGG 3 cut(s) 245, 559, 773
Bse1I ACTGG 1 cut(s) 209
Bse3DI GCAATG 1 cut(s) 374
BseBI CCWGG 2 cut(s) 198, 518
BseCI ATCGAT 1 cut(s) 395
BseDI CCNNGG 5 cut(s) 190, 268, 362, 373, 788
BseGI GGATG 1 cut(s) 710
BseLI CCNNNNNNNGG 3 cut(s) 245, 559, 773
BseMI GCAATG 1 cut(s) 374
BseMII CTCAG 1 cut(s) 784
BseNI ACTGG 1 cut(s) 209
BseSI GKGCMC 2 cut(s) 208, 325
BseXI GCAGC 5 cut(s) 39, 584, 606, 764, 831
BsgI GTGCAG 1 cut(s) 613
BshFI GGCC 2 cut(s) 201, 267
BshNI GGYRCC 1 cut(s) 320
BshVI ATCGAT 1 cut(s) 395
BsiHKAI GWGCWC 1 cut(s) 208
BsiHKCI CYCGRG 2 cut(s) 373, 608
BsiSI CCGG 3 cut(s) 374, 540, 659
BslFI GGGAC 1 cut(s) 598
BslI CCNNNNNNNGG 3 cut(s) 245, 559, 773
BsmAI GTCTC 1 cut(s) 718
BsmFI GGGAC 1 cut(s) 598
BsnI GGCC 2 cut(s) 201, 267
BsoBI CYCGRG 2 cut(s) 373, 608
Bsp119I TTCGAA 1 cut(s) 170
Bsp1286I GDGCHC 2 cut(s) 208, 325
Bsp143I GATC 2 cut(s) 549, 640
Bsp19I CCATGG 1 cut(s) 190
BspACI CCGC 1 cut(s) 629
BspANI GGCC 2 cut(s) 201, 267
BspCNI CTCAG 1 cut(s) 783
BspDI ATCGAT 1 cut(s) 395
BspLI GGNNCC 2 cut(s) 322, 409
BspPI GGATC 2 cut(s) 544, 635
BspQI GCTCTTC 1 cut(s) 12
BspT104I TTCGAA 1 cut(s) 170
BspT107I GGYRCC 1 cut(s) 320
BsrDI GCAATG 1 cut(s) 374
BsrI ACTGG 1 cut(s) 209
BssECI CCNNGG 5 cut(s) 190, 268, 362, 373, 788
BssMI GATC 2 cut(s) 549, 640
BssT1I CCWWGG 4 cut(s) 190, 268, 362, 788
Bst2UI CCWGG 2 cut(s) 198, 518
Bst4CI ACNGT 1 cut(s) 156
Bst6I CTCTTC 2 cut(s) 12, 132
BstBI TTCGAA 1 cut(s) 170
BstC8I GCNNGC 3 cut(s) 265, 460, 573
BstDEI CTNAG 3 cut(s) 24, 686, 770
BstDSI CCRYGG 1 cut(s) 190
BstENI CCTNNNNNAGG 1 cut(s) 771
BstF5I GGATG 1 cut(s) 710
BstKTI GATC 2 cut(s) 552, 643
BstMAI GTCTC 1 cut(s) 718
BstMBI GATC 2 cut(s) 549, 640
BstMWI GCNNNNNNNGC 2 cut(s) 320, 699
BstNI CCWGG 2 cut(s) 198, 518
BstSCI CCNGG 6 cut(s) 196, 372, 373, 516, 539, 657
BstSLI GKGCMC 2 cut(s) 208, 325
BstV1I GCAGC 5 cut(s) 39, 584, 606, 764, 831
BstV2I GAAGAC 1 cut(s) 456
BstX2I RGATCY 1 cut(s) 549
BstYI RGATCY 1 cut(s) 549
Bsu15I ATCGAT 1 cut(s) 395
BsuRI GGCC 2 cut(s) 201, 267
BsuTUI ATCGAT 1 cut(s) 395
BtgI CCRYGG 1 cut(s) 190
BtsCI GGATG 1 cut(s) 710
BtsIMutI CAGTG 1 cut(s) 216
Cac8I GCNNGC 3 cut(s) 265, 460, 573
CaiI CAGNNNCTG 1 cut(s) 777
Cfr13I GGNCC 2 cut(s) 122, 194
Cfr9I CCCGGG 1 cut(s) 373
ClaI ATCGAT 1 cut(s) 395
CviAII CATG 5 cut(s) 191, 299, 326, 454, 721
DdeI CTNAG 3 cut(s) 24, 686, 770
DpnI GATC 2 cut(s) 551, 642
DpnII GATC 2 cut(s) 549, 640
DraI TTTAAA 1 cut(s) 420
Eam1104I CTCTTC 2 cut(s) 12, 132
EarI CTCTTC 2 cut(s) 12, 132
Eco130I CCWWGG 4 cut(s) 190, 268, 362, 788
Eco147I AGGCCT 1 cut(s) 267
Eco47I GGWCC 2 cut(s) 122, 194
Eco88I CYCGRG 2 cut(s) 373, 608
EcoNI CCTNNNNNAGG 1 cut(s) 771
EcoRII CCWGG 2 cut(s) 196, 516
EcoT14I CCWWGG 4 cut(s) 190, 268, 362, 788
ErhI CCWWGG 4 cut(s) 190, 268, 362, 788
FaeI CATG 5 cut(s) 194, 302, 329, 457, 724
FaqI GGGAC 1 cut(s) 598
FatI CATG 5 cut(s) 190, 298, 325, 453, 720
Fnu4HI GCNGC 5 cut(s) 53, 595, 598, 778, 820
FokI GGATG 1 cut(s) 697
Fsp4HI GCNGC 5 cut(s) 53, 595, 598, 778, 820
FspBI CTAG 1 cut(s) 56
GluI GCNGC 5 cut(s) 53, 595, 598, 778, 820
HaeIII GGCC 2 cut(s) 201, 267
HapII CCGG 3 cut(s) 374, 540, 659
Hin1II CATG 5 cut(s) 194, 302, 329, 457, 724
HindIII AAGCTT 1 cut(s) 533
HinfI GANTC 4 cut(s) 47, 235, 565, 611
HpaII CCGG 3 cut(s) 374, 540, 659
HphI GGTGA 2 cut(s) 574, 756
Hpy166II GTNNAC 1 cut(s) 206
Hpy188I TCNGA 3 cut(s) 46, 135, 773
Hpy188III TCNNGA 4 cut(s) 388, 608, 619, 644
Hpy8I GTNNAC 1 cut(s) 206
HpyCH4III ACNGT 1 cut(s) 156
HpyCH4IV ACGT 2 cut(s) 106, 522
HpyCH4V TGCA 8 cut(s) 152, 206, 335, 462, 504, 575, 594, 600
HpyF10VI GCNNNNNNNGC 2 cut(s) 320, 699
HpyF3I CTNAG 3 cut(s) 24, 686, 770
HpySE526I ACGT 2 cut(s) 106, 522
Hsp92II CATG 5 cut(s) 194, 302, 329, 457, 724
Kzo9I GATC 2 cut(s) 549, 640
LguI GCTCTTC 1 cut(s) 12
LmnI GCTCC 1 cut(s) 827
Lsp1109I GCAGC 5 cut(s) 39, 584, 606, 764, 831
MaeI CTAG 1 cut(s) 56
MaeII ACGT 2 cut(s) 106, 522
MaeIII GTNAC 1 cut(s) 464
MalI GATC 2 cut(s) 551, 642
MboI GATC 2 cut(s) 549, 640
MboII GAAGA 6 cut(s) 29, 43, 112, 119, 461, 677
MflI RGATCY 1 cut(s) 549
MhlI GDGCHC 2 cut(s) 208, 325
MluCI AATT 2 cut(s) 59, 415
MlyI GAGTC 3 cut(s) 56, 229, 620
MmeI TCCRAC 1 cut(s) 89
MnlI CCTC 7 cut(s) 135, 346, 626, 655, 767, 777, 795
MseI TTAA 3 cut(s) 243, 419, 495
MslI CAYNNNNRTG 3 cut(s) 285, 330, 719
MspA1I CMGCKG 3 cut(s) 597, 629, 702
MspI CCGG 3 cut(s) 374, 540, 659
MspR9I CCNGG 6 cut(s) 198, 374, 375, 518, 541, 659
MvaI CCWGG 2 cut(s) 198, 518
MwoI GCNNNNNNNGC 2 cut(s) 320, 699
NciI CCSGG 4 cut(s) 374, 375, 541, 659
NcoI CCATGG 1 cut(s) 190
NdeII GATC 2 cut(s) 549, 640
NlaIII CATG 5 cut(s) 194, 302, 329, 457, 724
NlaIV GGNNCC 2 cut(s) 322, 409
NspV TTCGAA 1 cut(s) 170
OliI CACNNNNGTG 1 cut(s) 285
PceI AGGCCT 1 cut(s) 267
PciSI GCTCTTC 1 cut(s) 12
PfeI GAWTC 1 cut(s) 565
PfoI TCCNGGA 1 cut(s) 657
PkrI GCNGC 5 cut(s) 54, 596, 599, 779, 821
PleI GAGTC 3 cut(s) 55, 229, 619
PpsI GAGTC 3 cut(s) 55, 229, 619
Psp1406I AACGTT 1 cut(s) 106
Psp6I CCWGG 2 cut(s) 196, 516
PspGI CCWGG 2 cut(s) 196, 516
PspN4I GGNNCC 2 cut(s) 322, 409
PspPI GGNCC 2 cut(s) 122, 194
PstNI CAGNNNCTG 1 cut(s) 777
PsuI RGATCY 1 cut(s) 549
PvuII CAGCTG 2 cut(s) 597, 702
RseI CAYNNNNRTG 3 cut(s) 285, 330, 719
SapI GCTCTTC 1 cut(s) 12
SaqAI TTAA 3 cut(s) 243, 419, 495
SatI GCNGC 5 cut(s) 53, 595, 598, 778, 820
Sau3AI GATC 2 cut(s) 549, 640
Sau96I GGNCC 2 cut(s) 122, 194
SchI GAGTC 3 cut(s) 56, 229, 620
ScrFI CCNGG 6 cut(s) 198, 374, 375, 518, 541, 659
SduI GDGCHC 2 cut(s) 208, 325
SfuI TTCGAA 1 cut(s) 170
SinI GGWCC 2 cut(s) 122, 194
SmaI CCCGGG 1 cut(s) 375
SmiMI CAYNNNNRTG 3 cut(s) 285, 330, 719
SmlI CTYRAG 1 cut(s) 617
SmoI CTYRAG 1 cut(s) 617
SrfI GCCCGGGC 1 cut(s) 375
Sse9I AATT 2 cut(s) 59, 415
SseBI AGGCCT 1 cut(s) 267
SsiI CCGC 1 cut(s) 629
SspMI CTAG 1 cut(s) 56
StuI AGGCCT 1 cut(s) 267
StyD4I CCNGG 6 cut(s) 196, 372, 373, 516, 539, 657
StyI CCWWGG 4 cut(s) 190, 268, 362, 788
TaaI ACNGT 1 cut(s) 156
TaiI ACGT 2 cut(s) 109, 525
TaqI TCGA 3 cut(s) 98, 170, 395
TaqII GACCGA 1 cut(s) 54
TasI AATT 2 cut(s) 59, 415
TfiI GAWTC 1 cut(s) 565
Tru1I TTAA 3 cut(s) 243, 419, 495
Tru9I TTAA 3 cut(s) 243, 419, 495
TscAI CASTG 1 cut(s) 216
TseI GCWGC 5 cut(s) 52, 594, 597, 777, 819
TspDTI ATGAA 4 cut(s) 101, 119, 287, 391
TspGWI ACGGA 2 cut(s) 24, 261
TspMI CCCGGG 1 cut(s) 373
TspRI CASTG 1 cut(s) 216
VneI GTGCAC 1 cut(s) 204
VpaK11BI GGWCC 2 cut(s) 122, 194
XagI CCTNNNNNAGG 1 cut(s) 771
XapI RAATTY 2 cut(s) 59, 415
XmaI CCCGGG 1 cut(s) 373
XspI CTAG 1 cut(s) 56
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.