Rw6G035930

deSI-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0002011
Physical Location & Seq
Reverse (-)
60521319 .. 60524780
3462 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G035930.1

Sequence Viewer

Length: 768 bp
ATGAAATTTGAATTAAAGAAAAGATGGAAATCAATTGTCCCACTTCAGTTGAAACACAAATCAGCCACCCGTTTTTCTTTATTTCCCAAATCGAAGTCAGATTTTGGTCCGGGCAAAGCACCTGTATATCTCAATGTATATGACTTGACACCCATGAATGGCTATGTCTATTGGGCAGGCTTTGGAATTTTTCACTCTGGTGTTGAAGTTCATGGCGTTGAGTATGCATTTGGAGCACATGACTACCCTACCAGTGGTGTTTTTGAGGTTGAACCTCGGCAATGCCCAGGATTCAAGTTCAGGAAATCTATATTTATTGGGACCACAAGCTTAGACCCTATTCAGGTTAGAGAGTTCATGGAGCGCCAGTCATTGAGGTACAATGGTGATACATATCACCTGATTGTCAAGAATTGCAACCATTTCTGCAGAGATATCTGCTACAAGCTAACTGGGAAATCAATTCCAAAGTGGGTAAATCGACTGGCAAGAATAGGTTCAATATGCAACTGCATACTTCCTGAAGCGCTAAAGATTTCTGCTGTACAACATGACCCTAACAACCAACCATATGATAGTGAGAAGAGGAGTTTGAGAAGTGCCTTCAGTTGCCTGTCTTCTATCTGCAAGCAGGCAGAAGCAATTGTCATCATCTTCATTGTTTCTACAGTCACCCTTGAAAGGCTGCTTGCCACCATGGGAATTAAGAAGGTCAAACAATGGTTCCTTGAAGGAAAGGTGAGTGTTTGCAGGATTGCTGTTGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_C97

Protein Analysis

255

Amino Acids

28.97

Weight (kDa)

9.52

Isoelectric Point (pI)

26.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_C97 PF05903 41 - 176 6.7e-50 PPPDE putative peptidase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 2 cut(s) 5, 186
AcuI CTGAAG 3 cut(s) 29, 543, 589
AfaI GTAC 2 cut(s) 380, 546
AfeI AGCGCT 1 cut(s) 528
AfiI CCNNNNNNNGG 4 cut(s) 158, 254, 343, 681
AgsI TTSAA 8 cut(s) 11, 52, 206, 272, 295, 501, 680, 731
AjnI CCWGG 1 cut(s) 286
AleI CACNNNNGTG 1 cut(s) 198
AluBI AGCT 2 cut(s) 330, 448
AluI AGCT 2 cut(s) 330, 448
Alw21I GWGCWC 1 cut(s) 238
Aor51HI AGCGCT 1 cut(s) 528
ApeKI GCWGC 1 cut(s) 685
ApoI RAATTY 2 cut(s) 5, 186
Asp700I GAANNNNTTC 1 cut(s) 496
AspLEI GCGC 2 cut(s) 366, 529
AspS9I GGNCC 2 cut(s) 107, 321
AsuC2I CCSGG 1 cut(s) 111
AsuHPI GGTGA 4 cut(s) 389, 398, 664, 751
AvaII GGWCC 2 cut(s) 107, 321
BaeI ACNNNNGTAYC 2 cut(s) 370, 403
BbsI GAAGAC 1 cut(s) 609
Bbv12I GWGCWC 1 cut(s) 238
BbvI GCAGC 1 cut(s) 672
BccI CCATC 1 cut(s) 18
BciT130I CCWGG 1 cut(s) 288
BcnI CCSGG 1 cut(s) 111
BfmI CTRYAG 2 cut(s) 427, 666
BfoI RGCGCY 2 cut(s) 367, 530
BisI GCNGC 1 cut(s) 686
BlsI GCNGC 1 cut(s) 687
Bme1390I CCNGG 2 cut(s) 111, 288
Bme18I GGWCC 2 cut(s) 107, 321
BmgT120I GGNCC 2 cut(s) 107, 321
BmiI GGNNCC 2 cut(s) 322, 725
BmrFI CCNGG 2 cut(s) 111, 288
BmrI ACTGGG 1 cut(s) 462
BmuI ACTGGG 1 cut(s) 462
BpiI GAAGAC 1 cut(s) 609
BpuMI CCSGG 1 cut(s) 111
BsaBI GATNNNNATC 2 cut(s) 28, 393
BsaJI CCNNGG 3 cut(s) 275, 286, 696
BsaXI ACNNNNNCTCC 2 cut(s) 353, 383
Bsc4I CCNNNNNNNGG 4 cut(s) 158, 254, 343, 681
Bse1I ACTGG 4 cut(s) 252, 367, 457, 489
Bse3DI GCAATG 1 cut(s) 287
Bse8I GATNNNNATC 2 cut(s) 28, 393
BseBI CCWGG 1 cut(s) 288
BseDI CCNNGG 3 cut(s) 275, 286, 696
BseJI GATNNNNATC 2 cut(s) 28, 393
BseLI CCNNNNNNNGG 4 cut(s) 158, 254, 343, 681
BseMI GCAATG 1 cut(s) 287
BseNI ACTGG 4 cut(s) 252, 367, 457, 489
BseRI GAGGAG 1 cut(s) 601
BseXI GCAGC 1 cut(s) 672
BsiHKAI GWGCWC 1 cut(s) 238
BsiSI CCGG 1 cut(s) 110
BslFI GGGAC 2 cut(s) 23, 334
BslI CCNNNNNNNGG 4 cut(s) 158, 254, 343, 681
BsmFI GGGAC 2 cut(s) 23, 334
Bsp1286I GDGCHC 1 cut(s) 238
Bsp1407I TGTACA 1 cut(s) 544
Bsp19I CCATGG 1 cut(s) 696
BspLI GGNNCC 2 cut(s) 322, 725
BspMAI CTGCAG 1 cut(s) 431
BsrDI GCAATG 1 cut(s) 287
BsrGI TGTACA 1 cut(s) 544
BsrI ACTGG 4 cut(s) 252, 367, 457, 489
BssECI CCNNGG 3 cut(s) 275, 286, 696
BssT1I CCWWGG 1 cut(s) 696
Bst2UI CCWGG 1 cut(s) 288
Bst4CI ACNGT 1 cut(s) 670
Bst6I CTCTTC 1 cut(s) 578
BstAUI TGTACA 1 cut(s) 544
BstC8I GCNNGC 4 cut(s) 178, 629, 633, 690
BstDEI CTNAG 1 cut(s) 331
BstDSI CCRYGG 1 cut(s) 696
BstH2I RGCGCY 2 cut(s) 367, 530
BstHHI GCGC 2 cut(s) 366, 529
BstMWI GCNNNNNNNGC 1 cut(s) 233
BstNI CCWGG 1 cut(s) 288
BstSCI CCNGG 2 cut(s) 109, 286
BstSFI CTRYAG 2 cut(s) 427, 666
BstV1I GCAGC 1 cut(s) 672
BstV2I GAAGAC 1 cut(s) 609
BtgI CCRYGG 1 cut(s) 696
BtsIMutI CAGTG 1 cut(s) 259
Cac8I GCNNGC 4 cut(s) 178, 629, 633, 690
CfoI GCGC 2 cut(s) 366, 529
Cfr13I GGNCC 2 cut(s) 107, 321
Csp6I GTAC 2 cut(s) 379, 545
CspCI CAANNNNNGTGG 2 cut(s) 30, 65
CviAII CATG 6 cut(s) 154, 212, 239, 358, 551, 697
CviJI RGCY 6 cut(s) 65, 162, 180, 330, 448, 685
CviKI_1 RGCY 6 cut(s) 65, 162, 180, 330, 448, 685
CviQI GTAC 2 cut(s) 379, 545
DdeI CTNAG 1 cut(s) 331
Eam1104I CTCTTC 1 cut(s) 578
EarI CTCTTC 1 cut(s) 578
Eco130I CCWWGG 1 cut(s) 696
Eco32I GATATC 1 cut(s) 436
Eco47I GGWCC 2 cut(s) 107, 321
Eco47III AGCGCT 1 cut(s) 528
Eco57I CTGAAG 3 cut(s) 29, 543, 589
EcoRII CCWGG 1 cut(s) 286
EcoRV GATATC 1 cut(s) 436
EcoT14I CCWWGG 1 cut(s) 696
EcoT22I ATGCAT 1 cut(s) 229
ErhI CCWWGG 1 cut(s) 696
FaeI CATG 6 cut(s) 157, 215, 242, 361, 554, 700
FaqI GGGAC 2 cut(s) 23, 334
FatI CATG 6 cut(s) 153, 211, 238, 357, 550, 696
FauNDI CATATG 1 cut(s) 571
Fnu4HI GCNGC 1 cut(s) 686
Fsp4HI GCNGC 1 cut(s) 686
GlaI GCGC 2 cut(s) 365, 528
GluI GCNGC 1 cut(s) 686
HaeII RGCGCY 2 cut(s) 367, 530
HapII CCGG 1 cut(s) 110
HhaI GCGC 2 cut(s) 366, 529
Hin1II CATG 6 cut(s) 157, 215, 242, 361, 554, 700
Hin6I GCGC 2 cut(s) 364, 527
HinP1I GCGC 2 cut(s) 364, 527
HindIII AAGCTT 1 cut(s) 328
HinfI GANTC 1 cut(s) 291
HpaII CCGG 1 cut(s) 110
HphI GGTGA 4 cut(s) 389, 398, 664, 751
Hpy188I TCNGA 1 cut(s) 100
Hpy188III TCNNGA 3 cut(s) 301, 409, 521
HpyAV CCTTC 3 cut(s) 613, 703, 725
HpyCH4III ACNGT 1 cut(s) 670
HpyCH4V TGCA 7 cut(s) 227, 417, 429, 507, 513, 627, 750
HpyF10VI GCNNNNNNNGC 1 cut(s) 233
HpyF3I CTNAG 1 cut(s) 331
Hsp92II CATG 6 cut(s) 157, 215, 242, 361, 554, 700
HspAI GCGC 2 cut(s) 364, 527
LmnI GCTCC 2 cut(s) 233, 361
Lsp1109I GCAGC 1 cut(s) 672
MaeIII GTNAC 1 cut(s) 670
MboII GAAGA 3 cut(s) 595, 609, 646
MfeI CAATTG 2 cut(s) 33, 642
MhlI GDGCHC 1 cut(s) 238
MluCI AATT 8 cut(s) 5, 11, 33, 186, 412, 462, 642, 702
MmeI TCCRAC 1 cut(s) 742
MnlI CCTC 4 cut(s) 259, 285, 369, 579
Mph1103I ATGCAT 1 cut(s) 229
MroXI GAANNNNTTC 1 cut(s) 496
MseI TTAA 2 cut(s) 14, 705
MslI CAYNNNNRTG 1 cut(s) 198
MspI CCGG 1 cut(s) 110
MspR9I CCNGG 2 cut(s) 111, 288
MunI CAATTG 2 cut(s) 33, 642
MvaI CCWGG 1 cut(s) 288
MwoI GCNNNNNNNGC 1 cut(s) 233
NciI CCSGG 1 cut(s) 111
NcoI CCATGG 1 cut(s) 696
NdeI CATATG 1 cut(s) 571
NlaIII CATG 6 cut(s) 157, 215, 242, 361, 554, 700
NlaIV GGNNCC 2 cut(s) 322, 725
NmeAIII GCCGAG 1 cut(s) 256
NmuCI GTSAC 1 cut(s) 670
NsiI ATGCAT 1 cut(s) 229
OliI CACNNNNGTG 1 cut(s) 198
PdmI GAANNNNTTC 1 cut(s) 496
PfeI GAWTC 1 cut(s) 291
PkrI GCNGC 1 cut(s) 687
Psp6I CCWGG 1 cut(s) 286
PspGI CCWGG 1 cut(s) 286
PspN4I GGNNCC 2 cut(s) 322, 725
PspPI GGNCC 2 cut(s) 107, 321
PstI CTGCAG 1 cut(s) 431
RsaI GTAC 2 cut(s) 380, 546
RsaNI GTAC 2 cut(s) 379, 545
RseI CAYNNNNRTG 1 cut(s) 198
SaqAI TTAA 2 cut(s) 14, 705
SatI GCNGC 1 cut(s) 686
Sau96I GGNCC 2 cut(s) 107, 321
ScrFI CCNGG 2 cut(s) 111, 288
SduI GDGCHC 1 cut(s) 238
SfcI CTRYAG 2 cut(s) 427, 666
SinI GGWCC 2 cut(s) 107, 321
SmiMI CAYNNNNRTG 1 cut(s) 198
Sse9I AATT 8 cut(s) 5, 11, 33, 186, 412, 462, 642, 702
StyD4I CCNGG 2 cut(s) 109, 286
StyI CCWWGG 1 cut(s) 696
TaaI ACNGT 1 cut(s) 670
TaqI TCGA 2 cut(s) 92, 481
TasI AATT 8 cut(s) 5, 11, 33, 186, 412, 462, 642, 702
TatI WGTACW 1 cut(s) 544
TfiI GAWTC 1 cut(s) 291
Tru1I TTAA 2 cut(s) 14, 705
Tru9I TTAA 2 cut(s) 14, 705
TscAI CASTG 1 cut(s) 259
TseFI GTSAC 1 cut(s) 670
TseI GCWGC 1 cut(s) 685
Tsp45I GTSAC 1 cut(s) 670
TspDTI ATGAA 5 cut(s) 17, 170, 200, 346, 646
TspRI CASTG 1 cut(s) 259
VpaK11BI GGWCC 2 cut(s) 107, 321
XapI RAATTY 2 cut(s) 5, 186
XmnI GAANNNNTTC 1 cut(s) 496
Zsp2I ATGCAT 1 cut(s) 229
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.