Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0028840.1

Orthogroup ID

OG0002011

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 5196

Gene Structure 5196 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0028840.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 990 bp

ataaactacaacagaaaggagctacttcacaacagaaatacattgcagaaaaagtctttgatatcttgcaggaggcatggaatcacttcaactcgcttggtccactatgacaatttgatgttgaatttcaatgacagagacagagagctagctgctgctgctgggttgctgggctccaatggcttctgtattctcttaatctactggaggcaagcattgactgttttctggtcacactatcaacaaaacatgaaatttgaattaaagaaaagatggaaatcaattgtcccacttcagttgaaacacaaatcagccacccgtttttctttatttcccaaatcgaagtcagattttggtccgggcaaagcacctgtatatctcaatgtatatgacttgacacccatgaatggctatgtctattgggcaggctttggaatttttcactctggtgttgaagttcatggcgttgagtatgcatttggagcacatgactaccctaccagtggtgtttttgaggttgaacctcggcaatgcccaggattcaagttcaggaaatctatatttattgggaccacaagcttagaccctattcaggttagagagttcatggagcgccagtcattgaggtacaatggtgatacatatcacctgattgtcaagaattgcaaccatttctgcagagatatctgctacaagctaactgggaaatcaattccaaagtgggtaaatcgactggcaagaataggttcaatatgcaactgcatacttcctgaagcgctaaagatttctgctgtacaacatgaccctaacaaccaaccatatgatagtgagaagaggagtttgagaagtgccttcagttgcctgtcttctatctcaatgcggcagaagcaattgtcatcgtcttcattgtttctacagtcacccttgaaaggctgcttgccaccatgggaattaagaaggtcaaacaatggttccttgaaggaaaggtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_C97

Protein Analysis

329

Amino Acids

37.93

Weight (kDa)

9.75

Isoelectric Point (pI)

42.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002011)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G47740 AT1G47740 AT1G47740
fragaria_vesca	FvH4_2g08250 FvH4_2g08250 FvH4_2g08250 FvH4_2g08250 FvH4_2g08250 FvH4_2g40100 FvH4_2g40100 FvH4_2g40100 FvH4_2g40100
malus_domestica	MD05G1070300.v1.1 MD08G1032400.v1.1 MD10G1081000.v1.1 MD15G1029100.v1.1
prunus_persica	Prupe.1G382300_v2.0.a1 Prupe.1G382300_v2.0.a1 Prupe.8G102300_v2.0.a1 Prupe.8G102300_v2.0.a1
pyrus_communis	pycom05g06050 pycom08g02570 pycom10g06410 pycom15g02580
rosa_chinensis	RchiOBHm_Chr6g0263121 RchiOBHm_Chr6g0300641
rosa_laevigata	RLG00000014372
rosa_multiflora	Rmu_sc0002146.1_g000001 Rmu_sc0010560.1_g000008 Rmu_sc0028840.1_g000001
rosa_roxburghii	Rroxscaffold_7G00167550
rosa_rugosa	Rorug06G0003700 Rorug06G0003700 Rorug06G0298200
rosa_samantha	Rh6AG122700 Rh6AG410700 Rh6BG117700 Rh6BG417900 Rh6CG116000 Rh6CG425400 Rh6DG104500 Rh6DG410800
rosa_wichuraiana	Rw0G002210 Rw6G010540 Rw6G035930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	880
AcsI	RAATTY	3 cut(s)	124, 254, 435
AcuI	CTGAAG	3 cut(s)	278, 792, 838
AfaI	GTAC	2 cut(s)	629, 795
AfeI	AGCGCT	1 cut(s)	777
AfiI	CCNNNNNNNGG	4 cut(s)	407, 503, 592, 929
AjnI	CCWGG	1 cut(s)	535
AleI	CACNNNNGTG	1 cut(s)	447
AluBI	AGCT	5 cut(s)	22, 148, 152, 579, 697
AluI	AGCT	5 cut(s)	22, 148, 152, 579, 697
Alw21I	GWGCWC	1 cut(s)	487
Alw26I	GTCTC	1 cut(s)	132
Aor51HI	AGCGCT	1 cut(s)	777
ApeKI	GCWGC	4 cut(s)	152, 155, 158, 933
ApoI	RAATTY	3 cut(s)	124, 254, 435
Asp700I	GAANNNNTTC	2 cut(s)	85, 745
AspLEI	GCGC	2 cut(s)	615, 778
AspS9I	GGNCC	3 cut(s)	100, 356, 570
AsuC2I	CCSGG	1 cut(s)	360
AsuHPI	GGTGA	3 cut(s)	638, 647, 912
AsuNHI	GCTAGC	1 cut(s)	148
AvaII	GGWCC	3 cut(s)	100, 356, 570
BaeI	ACNNNNGTAYC	2 cut(s)	619, 652
BanII	GRGCYC	1 cut(s)	176
BbsI	GAAGAC	2 cut(s)	858, 894
Bbv12I	GWGCWC	1 cut(s)	487
BbvI	GCAGC	4 cut(s)	139, 142, 145, 920
BccI	CCATC	1 cut(s)	267
BciT130I	CCWGG	1 cut(s)	537
BcnI	CCSGG	1 cut(s)	360
BcoDI	GTCTC	1 cut(s)	132
BfaI	CTAG	1 cut(s)	149
BfmI	CTRYAG	2 cut(s)	676, 914
BfoI	RGCGCY	2 cut(s)	616, 779
BisI	GCNGC	5 cut(s)	153, 156, 159, 881, 934
BlsI	GCNGC	5 cut(s)	154, 157, 160, 882, 935
Bme1390I	CCNGG	2 cut(s)	360, 537
Bme18I	GGWCC	3 cut(s)	100, 356, 570
BmgT120I	GGNCC	3 cut(s)	100, 356, 570
BmiI	GGNNCC	3 cut(s)	175, 571, 973
BmrFI	CCNGG	2 cut(s)	360, 537
BmrI	ACTGGG	1 cut(s)	711
BmtI	GCTAGC	1 cut(s)	152
BmuI	ACTGGG	1 cut(s)	711
BpiI	GAAGAC	2 cut(s)	858, 894
BpmI	CTGGAG	1 cut(s)	226
BpuMI	CCSGG	1 cut(s)	360
BsaBI	GATNNNNATC	2 cut(s)	277, 642
BsaJI	CCNNGG	3 cut(s)	524, 535, 944
BsaXI	ACNNNNNCTCC	2 cut(s)	602, 632
Bsc4I	CCNNNNNNNGG	4 cut(s)	407, 503, 592, 929
Bse1I	ACTGG	5 cut(s)	209, 501, 616, 706, 738
Bse3DI	GCAATG	2 cut(s)	41, 536
Bse8I	GATNNNNATC	2 cut(s)	277, 642
BseBI	CCWGG	1 cut(s)	537
BseDI	CCNNGG	3 cut(s)	524, 535, 944
BseJI	GATNNNNATC	2 cut(s)	277, 642
BseLI	CCNNNNNNNGG	4 cut(s)	407, 503, 592, 929
BseMI	GCAATG	2 cut(s)	41, 536
BseNI	ACTGG	5 cut(s)	209, 501, 616, 706, 738
BseRI	GAGGAG	1 cut(s)	850
BseXI	GCAGC	4 cut(s)	139, 142, 145, 920
BseYI	CCCAGC	2 cut(s)	161, 169
BsiHKAI	GWGCWC	1 cut(s)	487
BsiSI	CCGG	1 cut(s)	359
BslFI	GGGAC	2 cut(s)	272, 583
BslI	CCNNNNNNNGG	4 cut(s)	407, 503, 592, 929
BsmAI	GTCTC	1 cut(s)	132
BsmFI	GGGAC	2 cut(s)	272, 583
Bsp1286I	GDGCHC	2 cut(s)	176, 487
Bsp1407I	TGTACA	1 cut(s)	793
Bsp19I	CCATGG	1 cut(s)	944
BspACI	CCGC	1 cut(s)	880
BspLI	GGNNCC	3 cut(s)	175, 571, 973
BspMAI	CTGCAG	1 cut(s)	680
BspOI	GCTAGC	1 cut(s)	152
BsrDI	GCAATG	2 cut(s)	41, 536
BsrGI	TGTACA	1 cut(s)	793
BsrI	ACTGG	5 cut(s)	209, 501, 616, 706, 738
BssECI	CCNNGG	3 cut(s)	524, 535, 944
BssT1I	CCWWGG	1 cut(s)	944
Bst2UI	CCWGG	1 cut(s)	537
Bst4CI	ACNGT	2 cut(s)	223, 918
Bst6I	CTCTTC	1 cut(s)	827
BstAUI	TGTACA	1 cut(s)	793
BstC8I	GCNNGC	4 cut(s)	150, 213, 427, 938
BstDEI	CTNAG	1 cut(s)	580
BstDSI	CCRYGG	1 cut(s)	944
BstH2I	RGCGCY	2 cut(s)	616, 779
BstHHI	GCGC	2 cut(s)	615, 778
BstMAI	GTCTC	1 cut(s)	132
BstMWI	GCNNNNNNNGC	4 cut(s)	158, 180, 482, 886
BstNI	CCWGG	1 cut(s)	537
BstSCI	CCNGG	2 cut(s)	358, 535
BstSFI	CTRYAG	2 cut(s)	676, 914
BstV1I	GCAGC	4 cut(s)	139, 142, 145, 920
BstV2I	GAAGAC	2 cut(s)	858, 894
BtgI	CCRYGG	1 cut(s)	944
BtsIMutI	CAGTG	1 cut(s)	508
Cac8I	GCNNGC	4 cut(s)	150, 213, 427, 938
CfoI	GCGC	2 cut(s)	615, 778
Cfr13I	GGNCC	3 cut(s)	100, 356, 570
Csp6I	GTAC	2 cut(s)	628, 794
CspCI	CAANNNNNGTGG	2 cut(s)	279, 314
CviAII	CATG	8 cut(s)	77, 250, 403, 461, 488, 607, 800, 945
CviQI	GTAC	2 cut(s)	628, 794
DdeI	CTNAG	1 cut(s)	580
Eam1104I	CTCTTC	1 cut(s)	827
EarI	CTCTTC	1 cut(s)	827
Eco130I	CCWWGG	1 cut(s)	944
Eco24I	GRGCYC	1 cut(s)	176
Eco32I	GATATC	2 cut(s)	63, 685
Eco47I	GGWCC	3 cut(s)	100, 356, 570
Eco47III	AGCGCT	1 cut(s)	777
Eco57I	CTGAAG	3 cut(s)	278, 792, 838
EcoRII	CCWGG	1 cut(s)	535
EcoRV	GATATC	2 cut(s)	63, 685
EcoT14I	CCWWGG	1 cut(s)	944
EcoT22I	ATGCAT	1 cut(s)	478
EcoT38I	GRGCYC	1 cut(s)	176
ErhI	CCWWGG	1 cut(s)	944
FaeI	CATG	8 cut(s)	80, 253, 406, 464, 491, 610, 803, 948
FaqI	GGGAC	2 cut(s)	272, 583
FatI	CATG	8 cut(s)	76, 249, 402, 460, 487, 606, 799, 944
FauNDI	CATATG	1 cut(s)	820
Fnu4HI	GCNGC	5 cut(s)	153, 156, 159, 881, 934
FriOI	GRGCYC	1 cut(s)	176
Fsp4HI	GCNGC	5 cut(s)	153, 156, 159, 881, 934
FspBI	CTAG	1 cut(s)	149
GlaI	GCGC	2 cut(s)	614, 777
GluI	GCNGC	5 cut(s)	153, 156, 159, 881, 934
GsaI	CCCAGC	2 cut(s)	165, 173
GsuI	CTGGAG	1 cut(s)	226
HaeII	RGCGCY	2 cut(s)	616, 779
HapII	CCGG	1 cut(s)	359
HhaI	GCGC	2 cut(s)	615, 778
Hin1II	CATG	8 cut(s)	80, 253, 406, 464, 491, 610, 803, 948
Hin6I	GCGC	2 cut(s)	613, 776
HinP1I	GCGC	2 cut(s)	613, 776
HindIII	AAGCTT	1 cut(s)	577
HinfI	GANTC	2 cut(s)	81, 540
HpaII	CCGG	1 cut(s)	359
HphI	GGTGA	3 cut(s)	638, 647, 912
Hpy166II	GTNNAC	1 cut(s)	103
Hpy188I	TCNGA	1 cut(s)	349
Hpy188III	TCNNGA	3 cut(s)	550, 658, 770
Hpy8I	GTNNAC	1 cut(s)	103
HpyAV	CCTTC	3 cut(s)	862, 951, 973
HpyCH4III	ACNGT	2 cut(s)	223, 918
HpyCH4V	TGCA	7 cut(s)	46, 69, 476, 666, 678, 756, 762
HpyF10VI	GCNNNNNNNGC	4 cut(s)	158, 180, 482, 886
HpyF3I	CTNAG	1 cut(s)	580
Hsp92II	CATG	8 cut(s)	80, 253, 406, 464, 491, 610, 803, 948
HspAI	GCGC	2 cut(s)	613, 776
LmnI	GCTCC	4 cut(s)	19, 179, 482, 610
Lsp1109I	GCAGC	4 cut(s)	139, 142, 145, 920
MaeI	CTAG	1 cut(s)	149
MaeIII	GTNAC	2 cut(s)	231, 918
MboII	GAAGA	3 cut(s)	844, 858, 894
MfeI	CAATTG	2 cut(s)	282, 890
MhlI	GDGCHC	2 cut(s)	176, 487
MnlI	CCTC	6 cut(s)	66, 201, 508, 534, 618, 828
Mph1103I	ATGCAT	1 cut(s)	478
MroXI	GAANNNNTTC	2 cut(s)	85, 745
MseI	TTAA	3 cut(s)	197, 263, 953
MslI	CAYNNNNRTG	1 cut(s)	447
MspI	CCGG	1 cut(s)	359
MspR9I	CCNGG	2 cut(s)	360, 537
MunI	CAATTG	2 cut(s)	282, 890
MvaI	CCWGG	1 cut(s)	537
MwoI	GCNNNNNNNGC	4 cut(s)	158, 180, 482, 886
NciI	CCSGG	1 cut(s)	360
NcoI	CCATGG	1 cut(s)	944
NdeI	CATATG	1 cut(s)	820
NheI	GCTAGC	1 cut(s)	148
NlaIII	CATG	8 cut(s)	80, 253, 406, 464, 491, 610, 803, 948
NlaIV	GGNNCC	3 cut(s)	175, 571, 973
NmeAIII	GCCGAG	1 cut(s)	505
NmuCI	GTSAC	2 cut(s)	231, 918
NsiI	ATGCAT	1 cut(s)	478
OliI	CACNNNNGTG	1 cut(s)	447
PdmI	GAANNNNTTC	2 cut(s)	85, 745
PfeI	GAWTC	2 cut(s)	81, 540
PkrI	GCNGC	5 cut(s)	154, 157, 160, 882, 935
Psp6I	CCWGG	1 cut(s)	535
PspFI	CCCAGC	2 cut(s)	161, 169
PspGI	CCWGG	1 cut(s)	535
PspN4I	GGNNCC	3 cut(s)	175, 571, 973
PspPI	GGNCC	3 cut(s)	100, 356, 570
PstI	CTGCAG	1 cut(s)	680
RsaI	GTAC	2 cut(s)	629, 795
RsaNI	GTAC	2 cut(s)	628, 794
RseI	CAYNNNNRTG	1 cut(s)	447
SaqAI	TTAA	3 cut(s)	197, 263, 953
SatI	GCNGC	5 cut(s)	153, 156, 159, 881, 934
Sau96I	GGNCC	3 cut(s)	100, 356, 570
ScrFI	CCNGG	2 cut(s)	360, 537
SduI	GDGCHC	2 cut(s)	176, 487
SfcI	CTRYAG	2 cut(s)	676, 914
SinI	GGWCC	3 cut(s)	100, 356, 570
SmiMI	CAYNNNNRTG	1 cut(s)	447
SsiI	CCGC	1 cut(s)	880
SspMI	CTAG	1 cut(s)	149
StyD4I	CCNGG	2 cut(s)	358, 535
StyI	CCWWGG	1 cut(s)	944
TaaI	ACNGT	2 cut(s)	223, 918
TaqI	TCGA	2 cut(s)	341, 730
TatI	WGTACW	1 cut(s)	793
TauI	GCSGC	1 cut(s)	883
TfiI	GAWTC	2 cut(s)	81, 540
Tru1I	TTAA	3 cut(s)	197, 263, 953
Tru9I	TTAA	3 cut(s)	197, 263, 953
TscAI	CASTG	1 cut(s)	508
TseFI	GTSAC	2 cut(s)	231, 918
TseI	GCWGC	4 cut(s)	152, 155, 158, 933
Tsp45I	GTSAC	2 cut(s)	231, 918
TspDTI	ATGAA	5 cut(s)	266, 419, 449, 595, 894
TspRI	CASTG	1 cut(s)	508
VpaK11BI	GGWCC	3 cut(s)	100, 356, 570
XapI	RAATTY	3 cut(s)	124, 254, 435
XmnI	GAANNNNTTC	2 cut(s)	85, 745
XspI	CTAG	1 cut(s)	149
Zsp2I	ATGCAT	1 cut(s)	478

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.