Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0002011

Physical Location & Seq

Genomic Coordinates Reverse (-)

1588253 .. 1589762

Gene Structure 1510 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g02580.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 741 bp

ATGAAATTTGAGTTAAAGAGATGGAGTTCCATTTCCCCGCTTCAATTGAAAACCAAATCAGCGGGACGTTTTTGTATATTTCCCAAATCAAAGTCCGATAACGCTGAATCAGGAAAAGCACCAGTTTATCTCAATGTATATGATTTGACTCCCATGAATGGCTATGTCTATTGGGCAGGCTTTGGAATTTTTCACTCTGGTGTTGAAGTTCATGGTGTAGAATATGCATTCGGAGCACATGACTACCCTACAAGTGGCGTTTTTGAGGTTGAACCTCGCCAATGCCCAGGGTTCAAGTTCAGGAAGTCTATTTTAATCGGAACAACATGCTTGGACCCTACTCAGGTTCGAGAGTTTATGGAGCGCCAGTCTTTGAGCTATAACGGTGATACATATCACCTGATTGTCAAGAACTGCAACCATTTCTGCAGGGATATTTGTCGCAAGCTCACTGGAAAATCAATTCCTAAATGGGTGAATCGACTGGCAAGAATAGGTTCAGTATGCAACTGCGTACTTCCGGAATCTCTGAAGATTTCCGCTGTACAACACGACCCAAACTGCCAACCATACGACAGCGAGAAGAGGAGCTTGAGAAGCACCTTCAGTTGCCTGTCTTCCATCTCGATGAGGCAGAAGCAATTATCATCATCTTCGTTATTTCTGCAGTCGCCCCTGAAAGGCTGCTTACCGCCATGGGAATTGCGAAGGTCGTTGAATGGTTCGTTGAAAGAAAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_C97

Protein Analysis

247

Amino Acids

27.89

Weight (kDa)

9.38

Isoelectric Point (pI)

45.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002011)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G47740 AT1G47740 AT1G47740
fragaria_vesca	FvH4_2g08250 FvH4_2g08250 FvH4_2g08250 FvH4_2g08250 FvH4_2g08250 FvH4_2g40100 FvH4_2g40100 FvH4_2g40100 FvH4_2g40100
malus_domestica	MD05G1070300.v1.1 MD08G1032400.v1.1 MD10G1081000.v1.1 MD15G1029100.v1.1
prunus_persica	Prupe.1G382300_v2.0.a1 Prupe.1G382300_v2.0.a1 Prupe.8G102300_v2.0.a1 Prupe.8G102300_v2.0.a1
pyrus_communis	pycom05g06050 pycom08g02570 pycom10g06410 pycom15g02580
rosa_chinensis	RchiOBHm_Chr6g0263121 RchiOBHm_Chr6g0300641
rosa_laevigata	RLG00000014372
rosa_multiflora	Rmu_sc0002146.1_g000001 Rmu_sc0010560.1_g000008 Rmu_sc0028840.1_g000001
rosa_roxburghii	Rroxscaffold_7G00167550
rosa_rugosa	Rorug06G0003700 Rorug06G0003700 Rorug06G0298200
rosa_samantha	Rh6AG122700 Rh6AG410700 Rh6BG117700 Rh6BG417900 Rh6CG116000 Rh6CG425400 Rh6DG104500 Rh6DG410800
rosa_wichuraiana	Rw0G002210 Rw6G010540 Rw6G035930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	520
AciI	CCGC	4 cut(s)	38, 62, 540, 692
AcsI	RAATTY	2 cut(s)	5, 186
AcuI	CTGAAG	2 cut(s)	551, 589
AfaI	GTAC	2 cut(s)	516, 546
AfiI	CCNNNNNNNGG	4 cut(s)	158, 254, 343, 680
AgsI	TTSAA	7 cut(s)	44, 49, 206, 272, 295, 718, 730
AjnI	CCWGG	1 cut(s)	286
AleI	CACNNNNGTG	1 cut(s)	198
AluBI	AGCT	3 cut(s)	378, 448, 591
AluI	AGCT	3 cut(s)	378, 448, 591
Alw21I	GWGCWC	1 cut(s)	238
Aor13HI	TCCGGA	1 cut(s)	520
ApeKI	GCWGC	1 cut(s)	684
ApoI	RAATTY	2 cut(s)	5, 186
Asp700I	GAANNNNTTC	1 cut(s)	496
AspLEI	GCGC	1 cut(s)	366
AspS9I	GGNCC	1 cut(s)	334
AsuHPI	GGTGA	3 cut(s)	389, 398, 487
AvaII	GGWCC	1 cut(s)	334
BbsI	GAAGAC	1 cut(s)	609
Bbv12I	GWGCWC	1 cut(s)	238
BbvI	GCAGC	1 cut(s)	671
BccI	CCATC	2 cut(s)	15, 629
BciT130I	CCWGG	1 cut(s)	288
BfmI	CTRYAG	2 cut(s)	427, 665
BfoI	RGCGCY	1 cut(s)	367
BisI	GCNGC	1 cut(s)	685
BlsI	GCNGC	1 cut(s)	686
Bme1390I	CCNGG	1 cut(s)	288
Bme18I	GGWCC	1 cut(s)	334
BmgT120I	GGNCC	1 cut(s)	334
BmiI	GGNNCC	1 cut(s)	336
BmrFI	CCNGG	1 cut(s)	288
BpiI	GAAGAC	1 cut(s)	609
BpuEI	CTTGAG	1 cut(s)	613
BsaBI	GATNNNNATC	1 cut(s)	393
BsaJI	CCNNGG	3 cut(s)	286, 287, 695
BsaWI	WCCGGW	1 cut(s)	520
BsaXI	ACNNNNNCTCC	2 cut(s)	353, 383
Bsc4I	CCNNNNNNNGG	4 cut(s)	158, 254, 343, 680
Bse1I	ACTGG	4 cut(s)	122, 367, 457, 489
Bse8I	GATNNNNATC	1 cut(s)	393
BseAI	TCCGGA	1 cut(s)	520
BseBI	CCWGG	1 cut(s)	288
BseDI	CCNNGG	3 cut(s)	286, 287, 695
BseJI	GATNNNNATC	1 cut(s)	393
BseLI	CCNNNNNNNGG	4 cut(s)	158, 254, 343, 680
BseMII	CTCAG	1 cut(s)	356
BseNI	ACTGG	4 cut(s)	122, 367, 457, 489
BseRI	GAGGAG	1 cut(s)	601
BseXI	GCAGC	1 cut(s)	671
BsiHKAI	GWGCWC	1 cut(s)	238
BsiSI	CCGG	1 cut(s)	521
BslFI	GGGAC	1 cut(s)	78
BslI	CCNNNNNNNGG	4 cut(s)	158, 254, 343, 680
BsmFI	GGGAC	1 cut(s)	78
BsmI	GAATGC	1 cut(s)	227
Bsp1286I	GDGCHC	1 cut(s)	238
Bsp13I	TCCGGA	1 cut(s)	520
Bsp1407I	TGTACA	1 cut(s)	544
Bsp19I	CCATGG	1 cut(s)	695
BspACI	CCGC	4 cut(s)	38, 62, 540, 692
BspCNI	CTCAG	1 cut(s)	355
BspEI	TCCGGA	1 cut(s)	520
BspLI	GGNNCC	1 cut(s)	336
BspMAI	CTGCAG	2 cut(s)	431, 669
BsrGI	TGTACA	1 cut(s)	544
BsrI	ACTGG	4 cut(s)	122, 367, 457, 489
BssECI	CCNNGG	3 cut(s)	286, 287, 695
BssT1I	CCWWGG	1 cut(s)	695
Bst2UI	CCWGG	1 cut(s)	288
Bst4CI	ACNGT	1 cut(s)	386
Bst6I	CTCTTC	1 cut(s)	578
BstAUI	TGTACA	1 cut(s)	544
BstC8I	GCNNGC	2 cut(s)	178, 446
BstDEI	CTNAG	1 cut(s)	342
BstDSI	CCRYGG	1 cut(s)	695
BstH2I	RGCGCY	1 cut(s)	367
BstHHI	GCGC	1 cut(s)	366
BstMWI	GCNNNNNNNGC	2 cut(s)	233, 597
BstNI	CCWGG	1 cut(s)	288
BstNSI	RCATGY	1 cut(s)	330
BstSCI	CCNGG	1 cut(s)	286
BstSFI	CTRYAG	2 cut(s)	427, 665
BstV1I	GCAGC	1 cut(s)	671
BstV2I	GAAGAC	1 cut(s)	609
BtgI	CCRYGG	1 cut(s)	695
BtsIMutI	CAGTG	1 cut(s)	450
Cac8I	GCNNGC	2 cut(s)	178, 446
CfoI	GCGC	1 cut(s)	366
Cfr13I	GGNCC	1 cut(s)	334
Csp6I	GTAC	2 cut(s)	515, 545
CviAII	CATG	5 cut(s)	154, 212, 239, 327, 696
CviJI	RGCY	6 cut(s)	162, 180, 378, 448, 591, 684
CviKI_1	RGCY	6 cut(s)	162, 180, 378, 448, 591, 684
CviQI	GTAC	2 cut(s)	515, 545
DdeI	CTNAG	1 cut(s)	342
Eam1104I	CTCTTC	1 cut(s)	578
EarI	CTCTTC	1 cut(s)	578
Eco130I	CCWWGG	1 cut(s)	695
Eco47I	GGWCC	1 cut(s)	334
Eco57I	CTGAAG	2 cut(s)	551, 589
EcoRII	CCWGG	1 cut(s)	286
EcoT14I	CCWWGG	1 cut(s)	695
EcoT22I	ATGCAT	1 cut(s)	229
ErhI	CCWWGG	1 cut(s)	695
FaeI	CATG	5 cut(s)	157, 215, 242, 330, 699
FalI	AAGNNNNNCTT	2 cut(s)	575, 607
FaqI	GGGAC	1 cut(s)	78
FatI	CATG	5 cut(s)	153, 211, 238, 326, 695
FauI	CCCGC	2 cut(s)	45, 55
Fnu4HI	GCNGC	1 cut(s)	685
Fsp4HI	GCNGC	1 cut(s)	685
GlaI	GCGC	1 cut(s)	365
GluI	GCNGC	1 cut(s)	685
HaeII	RGCGCY	1 cut(s)	367
HapII	CCGG	1 cut(s)	521
HhaI	GCGC	1 cut(s)	366
Hin1II	CATG	5 cut(s)	157, 215, 242, 330, 699
Hin6I	GCGC	1 cut(s)	364
HinP1I	GCGC	1 cut(s)	364
HinfI	GANTC	4 cut(s)	107, 148, 478, 524
HpaII	CCGG	1 cut(s)	521
HphI	GGTGA	3 cut(s)	389, 398, 487
Hpy188I	TCNGA	4 cut(s)	97, 233, 320, 531
Hpy188III	TCNNGA	6 cut(s)	111, 301, 350, 409, 521, 625
HpyAV	CCTTC	2 cut(s)	613, 702
HpyCH4III	ACNGT	1 cut(s)	386
HpyCH4IV	ACGT	1 cut(s)	67
HpyCH4V	TGCA	5 cut(s)	227, 417, 429, 507, 667
HpyF10VI	GCNNNNNNNGC	2 cut(s)	233, 597
HpyF3I	CTNAG	1 cut(s)	342
HpySE526I	ACGT	1 cut(s)	67
Hsp92II	CATG	5 cut(s)	157, 215, 242, 330, 699
HspAI	GCGC	1 cut(s)	364
Kpn2I	TCCGGA	1 cut(s)	520
LmnI	GCTCC	3 cut(s)	233, 361, 588
Lsp1109I	GCAGC	1 cut(s)	671
MaeII	ACGT	1 cut(s)	67
MboII	GAAGA	4 cut(s)	544, 595, 609, 645
MfeI	CAATTG	1 cut(s)	44
MhlI	GDGCHC	1 cut(s)	238
MluCI	AATT	6 cut(s)	5, 44, 186, 462, 641, 701
MlyI	GAGTC	1 cut(s)	142
MnlI	CCTC	4 cut(s)	259, 285, 579, 624
Mph1103I	ATGCAT	1 cut(s)	229
MroI	TCCGGA	1 cut(s)	520
MroXI	GAANNNNTTC	1 cut(s)	496
MseI	TTAA	2 cut(s)	14, 314
MslI	CAYNNNNRTG	2 cut(s)	198, 626
MspA1I	CMGCKG	2 cut(s)	62, 542
MspI	CCGG	1 cut(s)	521
MspR9I	CCNGG	1 cut(s)	288
MunI	CAATTG	1 cut(s)	44
Mva1269I	GAATGC	1 cut(s)	227
MvaI	CCWGG	1 cut(s)	288
MwoI	GCNNNNNNNGC	2 cut(s)	233, 597
NcoI	CCATGG	1 cut(s)	695
NlaIII	CATG	5 cut(s)	157, 215, 242, 330, 699
NlaIV	GGNNCC	1 cut(s)	336
NsiI	ATGCAT	1 cut(s)	229
NspI	RCATGY	1 cut(s)	330
OliI	CACNNNNGTG	1 cut(s)	198
PasI	CCCWGGG	1 cut(s)	287
PctI	GAATGC	1 cut(s)	227
PdmI	GAANNNNTTC	1 cut(s)	496
PfeI	GAWTC	3 cut(s)	107, 478, 524
PkrI	GCNGC	1 cut(s)	686
PleI	GAGTC	1 cut(s)	142
PpsI	GAGTC	1 cut(s)	142
Psp6I	CCWGG	1 cut(s)	286
PspGI	CCWGG	1 cut(s)	286
PspN4I	GGNNCC	1 cut(s)	336
PspPI	GGNCC	1 cut(s)	334
PstI	CTGCAG	2 cut(s)	431, 669
RsaI	GTAC	2 cut(s)	516, 546
RsaNI	GTAC	2 cut(s)	515, 545
RseI	CAYNNNNRTG	2 cut(s)	198, 626
SaqAI	TTAA	2 cut(s)	14, 314
SatI	GCNGC	1 cut(s)	685
Sau96I	GGNCC	1 cut(s)	334
SchI	GAGTC	1 cut(s)	142
ScrFI	CCNGG	1 cut(s)	288
SduI	GDGCHC	1 cut(s)	238
SfcI	CTRYAG	2 cut(s)	427, 665
SinI	GGWCC	1 cut(s)	334
SmiMI	CAYNNNNRTG	2 cut(s)	198, 626
SmlI	CTYRAG	1 cut(s)	592
SmoI	CTYRAG	1 cut(s)	592
Sse9I	AATT	6 cut(s)	5, 44, 186, 462, 641, 701
SsiI	CCGC	4 cut(s)	38, 62, 540, 692
StyD4I	CCNGG	1 cut(s)	286
StyI	CCWWGG	1 cut(s)	695
TaaI	ACNGT	1 cut(s)	386
TaiI	ACGT	1 cut(s)	70
TaqI	TCGA	3 cut(s)	349, 481, 626
TasI	AATT	6 cut(s)	5, 44, 186, 462, 641, 701
TatI	WGTACW	1 cut(s)	544
TfiI	GAWTC	3 cut(s)	107, 478, 524
Tru1I	TTAA	2 cut(s)	14, 314
Tru9I	TTAA	2 cut(s)	14, 314
TscAI	CASTG	1 cut(s)	457
TseI	GCWGC	1 cut(s)	684
TspDTI	ATGAA	3 cut(s)	17, 170, 200
TspRI	CASTG	1 cut(s)	457
VpaK11BI	GGWCC	1 cut(s)	334
XapI	RAATTY	2 cut(s)	5, 186
XceI	RCATGY	1 cut(s)	330
XmnI	GAANNNNTTC	1 cut(s)	496
Zsp2I	ATGCAT	1 cut(s)	229

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.