Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0014374.1

Orthogroup ID

OG0010483

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 1863

Gene Structure 1862 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0014374.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1529 bp

atggagaggttttcacaaagagagagcattcttttaggctacagtcctcaaaattccttcatcaactctggttcttcgccccgcagtccccacaagaactcagatgttgatttccatgatgtgtttggtggcccgccgaggcgatcatcgattcaagatatgaggtacagcttcaacgatgttacagttaccagtgcacccaaaggggatgatgatgaggaaggttggtctgagaagccggtgtttgggggagagtcccacaatagaaggcggactcacagtgatgacttcttcgatgacatatttaaagccagcaattcagtgagttctagtccgaggaggcttcaacgggacccttattcttcttctccaggttctcgggttctaagtccggcacggcccctgccgcctaaaccggaatcttctctgggttcctcactgccaccacaattcagcctgcctgccaaattgaccaaaggggtggactctcctccaacaatttgtgccattactcgcacgacttctctttctagattttcaagccaagcatttcaaagttctgaaaacttgaaaagtgacattcggtcatcacttcgcatgagccatttttcccaggacttttctgttaccggtgaagggtcctcaaacttggccaagactgacaaagatgatacaggaggcaatttggaacaggattctaagagttcccaaagtccaactagtagcagtctgtttcagtttcatttctcaatatacaagtgggctagcaagccaatggtgatgccttttaggggaagaagtggttcaagagtgcaagcgactaaaaatgaggagcaatcaaggacttgtgaatatgctggtaacaagagtattggaaggatatcacctatatccactctaccttgtactgattttacctccaatgatcacccgctgacagattctacgtcgtccaagttggaaagcaacaaacaagaaaatgatttgcttcttgatgaaagcattaccaacaaagtagaagaacagccaaatcgattcattgaagagacaattcttcctgtatatgaatcttcagaaactttccgcagcctttgtagtagtgttgaagatgaagctggtgccactgtttcatgccaatggccgaaaaaagataccgattcatgccattggccgaaaaaatacaccgattcatgccagacttgtgaagatatagagcctcgtcctttgcttcaaacagcttgtgaagatccacaagaaaaagttcatgtgcttatggaacaactgcacaagcctgagataaaacctactcattctctgttttttgataatgatcttggagaaggaactaaggagataactaaattggctggtaaaaaggaaagcctggtcgaagccaccaaaaaatcatctgtagatgttgattctagtagaaatgtgaaaaatcagaacggaaaaagaagttccctgactaatgttcaagttgataaagctggtgtccaaggttcacttcggaacttgggagaccatct

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006897 GO:0006898 GO:0006996 GO:0007010 GO:0007015 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009637 GO:0009657 GO:0009658 GO:0009902 GO:0009903 GO:0009904 GO:0009987 GO:0016043 GO:0016192 GO:0019750 GO:0030029 GO:0030036 GO:0031982 GO:0043226 GO:0043227 GO:0044424 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0051644 GO:0051649 GO:0051656 GO:0051667 GO:0051716 GO:0071214 GO:0071478 GO:0071482 GO:0071483 GO:0071840 GO:0097435 GO:0098657 GO:0104004

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

510

Amino Acids

56.53

Weight (kDa)

5.91

Isoelectric Point (pI)

68.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010483)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G75100
fragaria_vesca	FvH4_2g40090
malus_domestica	MD08G1032500.v1.1 MD15G1029200.v1.1
prunus_persica	Prupe.1G382200_v2.0.a1 Prupe.1G382200_v2.0.a1
pyrus_communis	pycom08g02580 pycom15g02590
rosa_chinensis	RchiOBHm_Chr6g0300651
rosa_laevigata	RLG00000011314
rosa_multiflora	Rmu_co8005646.1_g000001 Rmu_sc0004226.1_g000015 Rmu_sc0014374.1_g000001
rosa_roxburghii	Rroxscaffold_7G00167530
rosa_rugosa	Rorug06G0298200
rosa_samantha	Rh6AG410800 Rh6BG418000 Rh6CG425500 Rh6DG410900
rosa_wichuraiana	Rw0G002200 Rw6G035940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	1118
AciI	CCGC	6 cut(s)	82, 134, 271, 407, 932, 1084
AclWI	GGATC	1 cut(s)	1241
AcoI	YGGCCR	3 cut(s)	651, 1139, 1169
AcsI	RAATTY	1 cut(s)	52
AcuI	CTGAAG	1 cut(s)	1056
AfaI	GTAC	2 cut(s)	167, 907
AfiI	CCNNNNNNNGG	3 cut(s)	245, 636, 791
AgeI	ACCGGT	1 cut(s)	629
AhdI	GACNNNNNGTC	1 cut(s)	583
AhlI	ACTAGT	1 cut(s)	719
AjnI	CCWGG	3 cut(s)	370, 612, 1383
AjuI	GAANNNNNNNTTGG	2 cut(s)	1491, 1523
AluBI	AGCT	4 cut(s)	171, 1115, 1238, 1490
AluI	AGCT	4 cut(s)	171, 1115, 1238, 1490
Alw21I	GWGCWC	1 cut(s)	199
Alw26I	GTCTC	2 cut(s)	1040, 1515
Alw44I	GTGCAC	1 cut(s)	195
AlwI	GGATC	1 cut(s)	1241
Ama87I	CYCGRG	1 cut(s)	378
AoxI	GGCC	5 cut(s)	130, 398, 651, 1139, 1169
ApaLI	GTGCAC	1 cut(s)	195
ApeKI	GCWGC	1 cut(s)	1086
ApoI	RAATTY	1 cut(s)	52
AsiGI	ACCGGT	1 cut(s)	629
Asp700I	GAANNNNTTC	2 cut(s)	802, 1260
AspS9I	GGNCC	4 cut(s)	131, 352, 399, 639
AsuHPI	GGTGA	4 cut(s)	644, 790, 876, 920
AsuNHI	GCTAGC	1 cut(s)	764
AvaI	CYCGRG	1 cut(s)	378
AvaII	GGWCC	2 cut(s)	352, 639
BaeGI	GKGCMC	1 cut(s)	199
BalI	TGGCCA	1 cut(s)	653
BanI	GGYRCC	1 cut(s)	1118
Bbv12I	GWGCWC	1 cut(s)	199
BbvI	GCAGC	1 cut(s)	1098
BceAI	ACGGC	1 cut(s)	413
BciT130I	CCWGG	3 cut(s)	372, 614, 1385
BclI	TGATCA	1 cut(s)	925
BcoDI	GTCTC	2 cut(s)	1040, 1515
BcuI	ACTAGT	1 cut(s)	719
BfaI	CTAG	5 cut(s)	330, 531, 720, 765, 1425
BfmI	CTRYAG	2 cut(s)	40, 1410
BisI	GCNGC	2 cut(s)	407, 1087
BlsI	GCNGC	2 cut(s)	408, 1088
Bme1390I	CCNGG	3 cut(s)	372, 614, 1385
Bme18I	GGWCC	2 cut(s)	352, 639
BmeRI	GACNNNNNGTC	1 cut(s)	583
BmeT110I	CYCGRG	1 cut(s)	378
BmgT120I	GGNCC	4 cut(s)	131, 352, 399, 639
BmiI	GGNNCC	6 cut(s)	353, 354, 401, 433, 640, 1120
BmrFI	CCNGG	3 cut(s)	372, 614, 1385
BmsI	GCATC	1 cut(s)	771
BmtI	GCTAGC	1 cut(s)	768
BpmI	CTGGAG	1 cut(s)	354
Bsa29I	ATCGAT	2 cut(s)	149, 1033
BsaBI	GATNNNNATC	1 cut(s)	1329
BsaI	GGTCTC	1 cut(s)	1515
BsaJI	CCNNGG	4 cut(s)	137, 335, 612, 1498
BsaWI	WCCGGW	2 cut(s)	415, 629
Bsc4I	CCNNNNNNNGG	3 cut(s)	245, 636, 791
Bse118I	RCCGGY	2 cut(s)	238, 629
Bse1I	ACTGG	1 cut(s)	192
Bse8I	GATNNNNATC	1 cut(s)	1329
BseBI	CCWGG	3 cut(s)	372, 614, 1385
BseCI	ATCGAT	2 cut(s)	149, 1033
BseDI	CCNNGG	4 cut(s)	137, 335, 612, 1498
BseGI	GGATG	1 cut(s)	214
BseJI	GATNNNNATC	1 cut(s)	1329
BseLI	CCNNNNNNNGG	3 cut(s)	245, 636, 791
BseMII	CTCAG	3 cut(s)	114, 222, 1284
BseNI	ACTGG	1 cut(s)	192
BseRI	GAGGAG	3 cut(s)	352, 480, 845
BseSI	GKGCMC	1 cut(s)	199
BseXI	GCAGC	1 cut(s)	1098
BsgI	GTGCAG	1 cut(s)	1268
BshFI	GGCC	5 cut(s)	132, 400, 653, 1141, 1171
BshNI	GGYRCC	1 cut(s)	1118
BshTI	ACCGGT	1 cut(s)	629
BshVI	ATCGAT	2 cut(s)	149, 1033
BsiHKAI	GWGCWC	1 cut(s)	199
BsiHKCI	CYCGRG	1 cut(s)	378
BsiSI	CCGG	4 cut(s)	239, 392, 416, 630
BslFI	GGGAC	3 cut(s)	72, 241, 365
BslI	CCNNNNNNNGG	3 cut(s)	245, 636, 791
BsmAI	GTCTC	2 cut(s)	1040, 1515
BsmFI	GGGAC	3 cut(s)	72, 241, 365
BsmI	GAATGC	1 cut(s)	27
BsnI	GGCC	5 cut(s)	132, 400, 653, 1141, 1171
Bso31I	GGTCTC	1 cut(s)	1515
BsoBI	CYCGRG	1 cut(s)	378
Bsp1286I	GDGCHC	1 cut(s)	199
Bsp143I	GATC	4 cut(s)	143, 925, 1246, 1330
BspACI	CCGC	6 cut(s)	82, 134, 271, 407, 932, 1084
BspANI	GGCC	5 cut(s)	132, 400, 653, 1141, 1171
BspCNI	CTCAG	3 cut(s)	113, 223, 1285
BspDI	ATCGAT	2 cut(s)	149, 1033
BspLI	GGNNCC	6 cut(s)	353, 354, 401, 433, 640, 1120
BspOI	GCTAGC	1 cut(s)	768
BspPI	GGATC	1 cut(s)	1241
BspT107I	GGYRCC	1 cut(s)	1118
BspTNI	GGTCTC	1 cut(s)	1515
BsrFI	RCCGGY	2 cut(s)	238, 629
BsrI	ACTGG	1 cut(s)	192
BssAI	RCCGGY	2 cut(s)	238, 629
BssECI	CCNNGG	4 cut(s)	137, 335, 612, 1498
BssMI	GATC	4 cut(s)	143, 925, 1246, 1330
BssT1I	CCWWGG	1 cut(s)	1498
Bst2UI	CCWGG	3 cut(s)	372, 614, 1385
Bst4CI	ACNGT	4 cut(s)	44, 187, 281, 1126
Bst6I	CTCTTC	1 cut(s)	1038
BstC8I	GCNNGC	7 cut(s)	134, 313, 458, 462, 766, 770, 816
BstDEI	CTNAG	6 cut(s)	100, 231, 386, 699, 1293, 1347
BstF5I	GGATG	1 cut(s)	214
BstKTI	GATC	4 cut(s)	146, 928, 1249, 1333
BstMAI	GTCTC	2 cut(s)	1040, 1515
BstMBI	GATC	4 cut(s)	143, 925, 1246, 1330
BstMWI	GCNNNNNNNGC	1 cut(s)	406
BstNI	CCWGG	3 cut(s)	372, 614, 1385
BstSCI	CCNGG	3 cut(s)	370, 612, 1383
BstSFI	CTRYAG	2 cut(s)	40, 1410
BstSLI	GKGCMC	1 cut(s)	199
BstV1I	GCAGC	1 cut(s)	1098
BstX2I	RGATCY	1 cut(s)	1246
BstXI	CCANNNNNNTGG	1 cut(s)	481
BstYI	RGATCY	1 cut(s)	1246
Bsu15I	ATCGAT	2 cut(s)	149, 1033
BsuRI	GGCC	5 cut(s)	132, 400, 653, 1141, 1171
BsuTUI	ATCGAT	2 cut(s)	149, 1033
BtsCI	GGATG	1 cut(s)	214
BtsI	GCAGTG	1 cut(s)	437
BtsIMutI	CAGTG	5 cut(s)	199, 286, 327, 437, 1122
Cac8I	GCNNGC	7 cut(s)	134, 313, 458, 462, 766, 770, 816
Cfr10I	RCCGGY	2 cut(s)	238, 629
Cfr13I	GGNCC	4 cut(s)	131, 352, 399, 639
ClaI	ATCGAT	2 cut(s)	149, 1033
Csp6I	GTAC	2 cut(s)	166, 906
CspAI	ACCGGT	1 cut(s)	629
CviAII	CATG	6 cut(s)	116, 598, 1131, 1161, 1191, 1265
CviQI	GTAC	2 cut(s)	166, 906
DdeI	CTNAG	6 cut(s)	100, 231, 386, 699, 1293, 1347
DpnI	GATC	4 cut(s)	145, 927, 1248, 1332
DpnII	GATC	4 cut(s)	143, 925, 1246, 1330
DraI	TTTAAA	1 cut(s)	307
DriI	GACNNNNNGTC	1 cut(s)	583
EaeI	YGGCCR	3 cut(s)	651, 1139, 1169
Eam1104I	CTCTTC	1 cut(s)	1038
Eam1105I	GACNNNNNGTC	1 cut(s)	583
EarI	CTCTTC	1 cut(s)	1038
EciI	GGCGGA	1 cut(s)	286
Eco130I	CCWWGG	1 cut(s)	1498
Eco31I	GGTCTC	1 cut(s)	1515
Eco32I	GATATC	1 cut(s)	882
Eco47I	GGWCC	2 cut(s)	352, 639
Eco57I	CTGAAG	1 cut(s)	1056
Eco88I	CYCGRG	1 cut(s)	378
EcoO109I	RGGNCCY	2 cut(s)	352, 639
EcoRII	CCWGG	3 cut(s)	370, 612, 1383
EcoRV	GATATC	1 cut(s)	882
EcoT14I	CCWWGG	1 cut(s)	1498
ErhI	CCWWGG	1 cut(s)	1498
FaeI	CATG	6 cut(s)	119, 601, 1134, 1164, 1194, 1268
FalI	AAGNNNNNCTT	2 cut(s)	1491, 1523
FaqI	GGGAC	3 cut(s)	72, 241, 365
FatI	CATG	6 cut(s)	115, 597, 1130, 1160, 1190, 1264
FauI	CCCGC	3 cut(s)	89, 141, 939
FbaI	TGATCA	1 cut(s)	925
Fnu4HI	GCNGC	2 cut(s)	407, 1087
FokI	GGATG	1 cut(s)	221
Fsp4HI	GCNGC	2 cut(s)	407, 1087
FspBI	CTAG	5 cut(s)	330, 531, 720, 765, 1425
GluI	GCNGC	2 cut(s)	407, 1087
GsuI	CTGGAG	1 cut(s)	354
HaeIII	GGCC	5 cut(s)	132, 400, 653, 1141, 1171
HapII	CCGG	4 cut(s)	239, 392, 416, 630
Hin1II	CATG	6 cut(s)	119, 601, 1134, 1164, 1194, 1268
HpaII	CCGG	4 cut(s)	239, 392, 416, 630
HphI	GGTGA	4 cut(s)	644, 790, 876, 920
Hpy166II	GTNNAC	3 cut(s)	197, 484, 1505
Hpy188I	TCNGA	7 cut(s)	103, 232, 336, 562, 1075, 1446, 1512
Hpy188III	TCNNGA	4 cut(s)	155, 531, 807, 992
Hpy8I	GTNNAC	3 cut(s)	197, 484, 1505
Hpy99I	CGWCG	1 cut(s)	952
HpyAV	CCTTC	6 cut(s)	67, 215, 261, 629, 870, 1334
HpyCH4III	ACNGT	4 cut(s)	44, 187, 281, 1126
HpyCH4IV	ACGT	1 cut(s)	947
HpyCH4V	TGCA	3 cut(s)	197, 814, 1285
HpyF10VI	GCNNNNNNNGC	1 cut(s)	406
HpyF3I	CTNAG	6 cut(s)	100, 231, 386, 699, 1293, 1347
HpySE526I	ACGT	1 cut(s)	947
Hsp92II	CATG	6 cut(s)	119, 601, 1134, 1164, 1194, 1268
KflI	GGGWCCC	1 cut(s)	352
Ksp22I	TGATCA	1 cut(s)	925
Kzo9I	GATC	4 cut(s)	143, 925, 1246, 1330
LmnI	GCTCC	1 cut(s)	832
Lsp1109I	GCAGC	1 cut(s)	1098
LweI	GCATC	1 cut(s)	771
MaeI	CTAG	5 cut(s)	330, 531, 720, 765, 1425
MaeII	ACGT	1 cut(s)	947
MaeIII	GTNAC	5 cut(s)	181, 187, 575, 625, 860
MalI	GATC	4 cut(s)	145, 927, 1248, 1332
MboI	GATC	4 cut(s)	143, 925, 1246, 1330
MflI	RGATCY	1 cut(s)	1246
MhlI	GDGCHC	1 cut(s)	199
MlsI	TGGCCA	1 cut(s)	653
MluCI	AATT	8 cut(s)	52, 316, 449, 467, 498, 682, 1050, 1361
MluNI	TGGCCA	1 cut(s)	653
MlyI	GAGTC	3 cut(s)	263, 268, 479
MmeI	TCCRAC	3 cut(s)	518, 740, 939
Mox20I	TGGCCA	1 cut(s)	653
MroXI	GAANNNNTTC	2 cut(s)	802, 1260
MscI	TGGCCA	1 cut(s)	653
MseI	TTAA	1 cut(s)	306
MslI	CAYNNNNRTG	2 cut(s)	282, 1135
Msp20I	TGGCCA	1 cut(s)	653
MspA1I	CMGCKG	1 cut(s)	934
MspI	CCGG	4 cut(s)	239, 392, 416, 630
MspR9I	CCNGG	3 cut(s)	372, 614, 1385
Mva1269I	GAATGC	1 cut(s)	27
MvaI	CCWGG	3 cut(s)	372, 614, 1385
MwoI	GCNNNNNNNGC	1 cut(s)	406
NdeII	GATC	4 cut(s)	143, 925, 1246, 1330
NheI	GCTAGC	1 cut(s)	764
NlaIII	CATG	6 cut(s)	119, 601, 1134, 1164, 1194, 1268
NlaIV	GGNNCC	6 cut(s)	353, 354, 401, 433, 640, 1120
NmeAIII	GCCGAG	1 cut(s)	162
NmuCI	GTSAC	1 cut(s)	575
PctI	GAATGC	1 cut(s)	27
PdmI	GAANNNNTTC	2 cut(s)	802, 1260
PfeI	GAWTC	9 cut(s)	151, 419, 695, 941, 1035, 1067, 1157, 1187, 1421
PinAI	ACCGGT	1 cut(s)	629
PkrI	GCNGC	2 cut(s)	408, 1088
PleI	GAGTC	3 cut(s)	262, 268, 479
PpsI	GAGTC	3 cut(s)	262, 268, 479
PpuMI	RGGWCCY	2 cut(s)	352, 639
Psp5II	RGGWCCY	2 cut(s)	352, 639
Psp6I	CCWGG	3 cut(s)	370, 612, 1383
PspGI	CCWGG	3 cut(s)	370, 612, 1383
PspN4I	GGNNCC	6 cut(s)	353, 354, 401, 433, 640, 1120
PspPI	GGNCC	4 cut(s)	131, 352, 399, 639
PspPPI	RGGWCCY	2 cut(s)	352, 639
PsuI	RGATCY	1 cut(s)	1246
RsaI	GTAC	2 cut(s)	167, 907
RsaNI	GTAC	2 cut(s)	166, 906
RseI	CAYNNNNRTG	2 cut(s)	282, 1135
SaqAI	TTAA	1 cut(s)	306
SatI	GCNGC	2 cut(s)	407, 1087
Sau3AI	GATC	4 cut(s)	143, 925, 1246, 1330
Sau96I	GGNCC	4 cut(s)	131, 352, 399, 639
SchI	GAGTC	3 cut(s)	263, 268, 479
ScrFI	CCNGG	3 cut(s)	372, 614, 1385
SduI	GDGCHC	1 cut(s)	199
SfaNI	GCATC	1 cut(s)	771
SfcI	CTRYAG	2 cut(s)	40, 1410
SinI	GGWCC	2 cut(s)	352, 639
SmiMI	CAYNNNNRTG	2 cut(s)	282, 1135
SpeI	ACTAGT	1 cut(s)	719
Sse9I	AATT	8 cut(s)	52, 316, 449, 467, 498, 682, 1050, 1361
SsiI	CCGC	6 cut(s)	82, 134, 271, 407, 932, 1084
SspMI	CTAG	5 cut(s)	330, 531, 720, 765, 1425
StyD4I	CCNGG	3 cut(s)	370, 612, 1383
StyI	CCWWGG	1 cut(s)	1498
TaaI	ACNGT	4 cut(s)	44, 187, 281, 1126
TaiI	ACGT	1 cut(s)	950
TaqI	TCGA	4 cut(s)	149, 294, 1033, 1389
TaqII	GACCGA	1 cut(s)	573
TasI	AATT	8 cut(s)	52, 316, 449, 467, 498, 682, 1050, 1361
TatI	WGTACW	1 cut(s)	905
TauI	GCSGC	1 cut(s)	409
TfiI	GAWTC	9 cut(s)	151, 419, 695, 941, 1035, 1067, 1157, 1187, 1421
Tru1I	TTAA	1 cut(s)	306
Tru9I	TTAA	1 cut(s)	306
TscAI	CASTG	5 cut(s)	199, 286, 327, 444, 1129
TseFI	GTSAC	1 cut(s)	575
TseI	GCWGC	1 cut(s)	1086
Tsp45I	GTSAC	1 cut(s)	575
TspGWI	ACGGA	1 cut(s)	1464
TspRI	CASTG	5 cut(s)	199, 286, 327, 444, 1129
VneI	GTGCAC	1 cut(s)	195
VpaK11BI	GGWCC	2 cut(s)	352, 639
XapI	RAATTY	1 cut(s)	52
XbaI	TCTAGA	1 cut(s)	530
XcmI	CCANNNNNNNNNTGG	1 cut(s)	122
XmnI	GAANNNNTTC	2 cut(s)	802, 1260
XspI	CTAG	5 cut(s)	330, 531, 720, 765, 1425

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.